TCONS_00028144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028144
Unique NameTCONS_00028144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length444

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028144 ID=TCONS_00028144|Name=TCONS_00028144|organism=Clytia hemisphaerica|type=transcript|length=444bp
TTTCACAGTCAGAAAATTTTATTGTCTAATGGGAAATATTGCTGTCTGTT
CCATTACTGATTACCATTCGCAAAGCCAACTCTTGTATGGAAGGGAGAAG
TTAAGAATTGTTTGATCCTTTTAGCATAAATGCTGGCTGATGGGTTTATC
ATGACAAAGGTTATCGCATTGACCGATCCGAAGATTGTTGGGAGCAGACC
AATCACATTTTGGAGTATCAAATGCTGATTCTCGGTCAACTGGGTTCGAT
TAAGGACTATTTGATAAATAACAGACAATCCGAATACAATGATGAAGAGA
TAGAGATAAACCAAGGTCACCTTTAAAGCTGCCTTGGTAGCATCCGATAA
ACTTTGGTTCATGCGTCGGTAATATCTTAACTTAGCGATGGAAAGGATGT
AGAAAACGATGACCAGAATGGTTACAATGACGTTTGCCGGCGTG
Run BLAST on NCBI

protein sequence of TCONS_00028144-protein

>TCONS_00028144-protein ID=TCONS_00028144-protein|Name=TCONS_00028144-protein|organism=Clytia hemisphaerica|type=polypeptide|length=129bp
TPANVIVTILVIVFYILSIAKLRYYRRMNQSLSDATKAALKVTLVYLYLF
IIVFGLSVIYQIVLNRTQLTENQHLILQNVIGLLPTIFGSVNAITFVMIN
PSASIYAKRIKQFLTSPFHTRVGFANGNQ
Run BLAST on NCBI

transcript from alignment at sc0000665:37423..37866

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028144 ID=TCONS_00028144|Name=TCONS_00028144|organism=Clytia hemisphaerica|type=transcript|length=444bp|location=Sequence derived from alignment at sc0000665:37423..37866 (Clytia hemisphaerica)
CACGCCGGCAAACGTCATTGTAACCATTCTGGTCATCGTTTTCTACATCC
TTTCCATCGCTAAGTTAAGATATTACCGACGCATGAACCAAAGTTTATCG
GATGCTACCAAGGCAGCTTTAAAGGTGACCTTGGTTTATCTCTATCTCTT
CATCATTGTATTCGGATTGTCTGTTATTTATCAAATAGTCCTTAATCGAA
CCCAGTTGACCGAGAATCAGCATTTGATACTCCAAAATGTGATTGGTCTG
CTCCCAACAATCTTCGGATCGGTCAATGCGATAACCTTTGTCATGATAAA
CCCATCAGCCAGCATTTATGCTAAAAGGATCAAACAATTCTTAACTTCTC
CCTTCCATACAAGAGTTGGCTTTGCGAATGGTAATCAGTAATGGAACAGA
CAGCAATATTTCCCATTAGACAATAAAATTTTCTGACTGTGAAA

Coding sequence (CDS) from alignment at sc0000665:37423..37866

>TCONS_00028144 ID=TCONS_00028144|Name=TCONS_00028144|organism=Clytia hemisphaerica|type=CDS|length=390bp|location=Sequence derived from alignment at sc0000665:37423..37866 (Clytia hemisphaerica)
ACGCCGGCAAACGTCATTGTAACCATTCTGGTCATCGTTTTCTACATCCT
TTCCATCGCTAAGTTAAGATATTACCGACGCATGAACCAAAGTTTATCGG
ATGCTACCAAGGCAGCTTTAAAGGTGACCTTGGTTTATCTCTATCTCTTC
ATCATTGTATTCGGATTGTCTGTTATTTATCAAATAGTCCTTAATCGAAC
CCAGTTGACCGAGAATCAGCATTTGATACTCCAAAATGTGATTGGTCTGC
TCCCAACAATCTTCGGATCGGTCAATGCGATAACCTTTGTCATGATAAAC
CCATCAGCCAGCATTTATGCTAAAAGGATCAAACAATTCTTAACTTCTCC
CTTCCATACAAGAGTTGGCTTTGCGAATGGTAATCAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015926XLOC_015926Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028144-proteinTCONS_00028144-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028144-exon-sc0000665-1491911889:37423..37866TCONS_00028144-exon-sc0000665-1491911889:37423..37866Clytia hemisphaericaexon
TCONS_00028144-exon-sc0000665-1510915933:37423..37866TCONS_00028144-exon-sc0000665-1510915933:37423..37866Clytia hemisphaericaexon
TCONS_00028144-exon-sc0000665-1575043694:37423..37866TCONS_00028144-exon-sc0000665-1575043694:37423..37866Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000665supercontigsc0000665:37423..37866 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.147219	0.170935	0	0	0.16088	0.388189	0.726836	0.381656	0.315162	1.26809	1.13502	0.100405	0	0	0	0	0	0	0	0.145966	0	0.0978565	0.210902	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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