TCONS_00028148 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028148
Unique NameTCONS_00028148
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length725

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028148 ID=TCONS_00028148|Name=TCONS_00028148|organism=Clytia hemisphaerica|type=transcript|length=725bp
CATGGTTATTGTTAATATCCTCTAAAGTAATATACTTGTAttgttaaaat
aattttacatgTTCAAATTCATCAAATGAAAATATGTGTACAATTACGTA
GGACTTGAGAATAATTAAATAGTACTGTGACGAAGCATGTAGCGTAAAAC
CCCCAGTGGCTGTTTATTCTGGAGGAAACATTATCTCCGACCAAGGCATC
CGTCACGCCGACCTTCGGAGGTTAAAGGTCCTCCCACGTTAAAACGTacg
taaaaaatcaaaacattttataagTTTGGTTTCTGGTATAAAGTTCTTTT
ATCGCTTCCAATGTCCACGTTAGTGTCGAATTTTTGTAATGTAACGTATT
TTGCAACTGTGTAATTCGAATGTATGTCTCAATGATAGTTGTGTCCCGGT
ATCGCTCCAGTAGAACATCTTGATCGTTGGGTCATGGTTGCCCAACATTG
ATAAACGGGTTTTCTAGGTTCGGACGCGtgtaagaaaaagaaatagcATT
GACGTTATAACAGTAAACTTAATTGTGAAACTTAACTTAGTTCAAGGCGT
ATGCAAGAGCGAGGATTGACAAGCTGACAAGCAGCGTTTTTCGTACGAAA
AACGCGGAGAAGCTCGATTTCCATCTTTCTTCGATCGTCGGAAATCACAC
GAATCGACTCCTGAAACCTTAAACATAAAACATTTCATCActtgttttca
aaagtttttcttttctgcATAAGTT
Run BLAST on NCBI

transcript from alignment at sc0000665:108597..109321

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028148 ID=TCONS_00028148|Name=TCONS_00028148|organism=Clytia hemisphaerica|type=transcript|length=725bp|location=Sequence derived from alignment at sc0000665:108597..109321 (Clytia hemisphaerica)
AACTTATgcagaaaagaaaaacttttgaaaacaagTGATGAAATGTTTTA
TGTTTAAGGTTTCAGGAGTCGATTCGTGTGATTTCCGACGATCGAAGAAA
GATGGAAATCGAGCTTCTCCGCGTTTTTCGTACGAAAAACGCTGCTTGTC
AGCTTGTCAATCCTCGCTCTTGCATACGCCTTGAACTAAGTTAAGTTTCA
CAATTAAGTTTACTGTTATAACGTCAATgctatttctttttcttacaCGC
GTCCGAACCTAGAAAACCCGTTTATCAATGTTGGGCAACCATGACCCAAC
GATCAAGATGTTCTACTGGAGCGATACCGGGACACAACTATCATTGAGAC
ATACATTCGAATTACACAGTTGCAAAATACGTTACATTACAAAAATTCGA
CACTAACGTGGACATTGGAAGCGATAAAAGAACTTTATACCAGAAACCAA
ActtataaaatgttttgattttttacgtACGTTTTAACGTGGGAGGACCT
TTAACCTCCGAAGGTCGGCGTGACGGATGCCTTGGTCGGAGATAATGTTT
CCTCCAGAATAAACAGCCACTGGGGGTTTTACGCTACATGCTTCGTCACA
GTACTATTTAATTATTCTCAAGTCCTACGTAATTGTACACATATTTTCAT
TTGATGAATTTGAAcatgtaaaattattttaacaaTACAAGTATATTACT
TTAGAGGATATTAACAATAACCATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015930XLOC_015930Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028148-exon-sc0000665-1491911889:108597..109321TCONS_00028148-exon-sc0000665-1491911889:108597..109321Clytia hemisphaericaexon
TCONS_00028148-exon-sc0000665-1510915933:108597..109321TCONS_00028148-exon-sc0000665-1510915933:108597..109321Clytia hemisphaericaexon
TCONS_00028148-exon-sc0000665-1575043694:108597..109321TCONS_00028148-exon-sc0000665-1575043694:108597..109321Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000665supercontigsc0000665:108597..109321 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.785885	0.968894	0.241477	0.67491	0.754352	0.425456	0.246633	0.326379	0.486313	0.504529	0.376126	0.616185	0.828698	1.48323	0.457466	0.258816	0.492174	0.207801	1.49	0.436648	0.107887	0.18732	0.188085	0	0.542109	1.06778	0.111101	0.031971	0	0.271198
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028148 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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