TCONS_00028150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028150
Unique NameTCONS_00028150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length773

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028150 ID=TCONS_00028150|Name=TCONS_00028150|organism=Clytia hemisphaerica|type=transcript|length=773bp
aatgacgtcattatgtAAGGAATtagttttattaaattttggaatttcca
attttaaatttgtatcatacaaaatcataaatctttcagaaaaattgACA
ACTTTCATTACAATCAGCTATTACATTTTATCAACCAATGAGAAAAATGT
CAATAGTTTCTGTTTTTTACTTCTCTTTAGTTCCTTCAGGGTTTGGTTCC
TTTCAACAAAACCTCCATTCTATTCTAGGGGCCACAAACCTCCATCTCCA
TTCTAACGACCATTAGTATGTTAGTAAAAATTTTACCGAATTAACTTACC
CTCACCATATTCGAAATCACAATTCAAAACTACTGTAAAAATTTCATTTT
GATATCTACCGTAGATCATGAGAAATTGCTAAAATTCTAAACTTCCGTTC
TAGGGGCTATTGAGAAAAAGTGACTAAACTTTGAGTCTATCTGAGTCAAC
AAAAAATGTGTCTGACTTAAAAATGTTTGAAAAAACTCTCTTGGGAAGGA
AAATAGAGAGGCTGAAGTTTGTTTTGGAGGAAAACTATTTTAGATTCATC
TATTTTTGAAGTTACCAGAGCGATTTCATTTTTGACCTCCGTTCTAGGGG
ACATCCACTGTAAGGTTTTATCTTCAAATTCTGTAATTGATTTTTCACTA
TGGTCAGAGCCCTTAAAAAGGATTGCCTCGCTGGCTACTTTCAATTATTG
ATAATAAATGCACAAATTCTCATTACACTTTATGCTGGGCCTTCAAGCCT
CTAGGCTACTTGTTAGTCTAAAT
Run BLAST on NCBI

transcript from alignment at sc0000665:149002..149774

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028150 ID=TCONS_00028150|Name=TCONS_00028150|organism=Clytia hemisphaerica|type=transcript|length=773bp|location=Sequence derived from alignment at sc0000665:149002..149774 (Clytia hemisphaerica)
ATTTAGACTAACAAGTAGCCTAGAGGCTTGAAGGCCCAGCATAAAGTGTA
ATGAGAATTTGTGCATTTATTATCAATAATTGAAAGTAGCCAGCGAGGCA
ATCCTTTTTAAGGGCTCTGACCATAGTGAAAAATCAATTACAGAATTTGA
AGATAAAACCTTACAGTGGATGTCCCCTAGAACGGAGGTCAAAAATGAAA
TCGCTCTGGTAACTTCAAAAATAGATGAATCTAAAATAGTTTTCCTCCAA
AACAAACTTCAGCCTCTCTATTTTCCTTCCCAAGAGAGTTTTTTCAAACA
TTTTTAAGTCAGACACATTTTTTGTTGACTCAGATAGACTCAAAGTTTAG
TCACTTTTTCTCAATAGCCCCTAGAACGGAAGTTTAGAATTTTAGCAATT
TCTCATGATCTACGGTAGATATCAAAATGAAATTTTTACAGTAGTTTTGA
ATTGTGATTTCGAATATGGTGAGGGTAAGTTAATTCGGTAAAATTTTTAC
TAACATACTAATGGTCGTTAGAATGGAGATGGAGGTTTGTGGCCCCTAGA
ATAGAATGGAGGTTTTGTTGAAAGGAACCAAACCCTGAAGGAACTAAAGA
GAAGTAAAAAACAGAAACTATTGACATTTTTCTCATTGGTTGATAAAATG
TAATAGCTGATTGTAATGAAAGTTGTcaatttttctgaaagatttatgat
tttgtatgatacaaatttaaaattggaaattccaaaatttaataaaacta
ATTCCTTacataatgacgtcatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015932XLOC_015932Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028150-exon-sc0000665-1491911889:149002..149774TCONS_00028150-exon-sc0000665-1491911889:149002..149774Clytia hemisphaericaexon
TCONS_00028150-exon-sc0000665-1510915933:149002..149774TCONS_00028150-exon-sc0000665-1510915933:149002..149774Clytia hemisphaericaexon
TCONS_00028150-exon-sc0000665-1575043694:149002..149774TCONS_00028150-exon-sc0000665-1575043694:149002..149774Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000665supercontigsc0000665:149002..149774 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.188711	0.0613411	0.142446	0.487763	0.339317	0.2011	0.970473	0.454273	0.689102	0.52527	0.70103	0.293255	0.292847	0.217232	0	0.0383318	0	0	0	0	0.060819	0	0.0721243	0.131143	1.08059	1.02468	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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