TCONS_00028152 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028152
Unique NameTCONS_00028152
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length853

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028152 ID=TCONS_00028152|Name=TCONS_00028152|organism=Clytia hemisphaerica|type=transcript|length=853bp
aatgaataatgtaggaaaatttgaaaaatatttcatattgATTGAAGAAT
TAATGAACGGCGATATCTTATAGATCATTGGAGAAGGGACTTATTAAATT
GGTCATAGCCCGATGGTTTGACATTCGTTAACAGGCATTATACACGCTTA
TACTCAGAAAAAAGTTGGACGCCCATTCATATCAGAGCAAACTGAAAACT
ATCTCGCAAGCTTGGTCCAAGAGTTAGCAAGATTGTGCGTGCATTTGGAG
TCGCGAGACAGGGGTTAGGCGGGTGAAATGCTACAAATGCCATTTCTCTC
TCACAGCCCCTGTCTCATAGACAGATTTCGGTGAGGTCATTGTCGATTGT
TGCACAGCTTATTTTTGTACTCTGGAATgtaacaatgaaatgaaaaacgg
GTGTCTCAtatcccagccggcacacaacgtcaaaacaacgtccatgtgac
attcataacgtccaattaacgttatttgaacgttaaaacaacgttgtgtg
ccagctgggatttaTTGATCATTACTATAAAGAAATTTAGATCGCGGAAG
AGTAGACCGTCTGACTAACGGGTCAGACGTTTTGTTCGGCGCCACATTCG
GAAAGGCGACAAGCTGAAGACCGCTAGGGCGTCCGTGACACGTGAACAAA
TTTTGAGATATTGCAGGAACATGGCAGAAGGCTTGGAAGGTAAGACAATT
ATGCAGTACCTATCCCGGCTAACCACAAATTCTTTTATCGCAGTTTCCTT
ACCTGGTACTCTAAGCACTACtgaatagcggtgtaaatgcaatGTGAGCA
TTAGGTCTAGCTTTTCTTGAATACTTAAAATGATGTAGCGCGTTAATTTT
TGA
Run BLAST on NCBI

transcript from alignment at sc0000665:176219..177071

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028152 ID=TCONS_00028152|Name=TCONS_00028152|organism=Clytia hemisphaerica|type=transcript|length=853bp|location=Sequence derived from alignment at sc0000665:176219..177071 (Clytia hemisphaerica)
TCAAAAATTAACGCGCTACATCATTTTAAGTATTCAAGAAAAGCTAGACC
TAATGCTCACattgcatttacaccgctattcaGTAGTGCTTAGAGTACCA
GGTAAGGAAACTGCGATAAAAGAATTTGTGGTTAGCCGGGATAGGTACTG
CATAATTGTCTTACCTTCCAAGCCTTCTGCCATGTTCCTGCAATATCTCA
AAATTTGTTCACGTGTCACGGACGCCCTAGCGGTCTTCAGCTTGTCGCCT
TTCCGAATGTGGCGCCGAACAAAACGTCTGACCCGTTAGTCAGACGGTCT
ACTCTTCCGCGATCTAAATTTCTTTATAGTAATGATCAAtaaatcccagc
tggcacacaacgttgttttaacgttcaaataacgttaattggacgttatg
aatgtcacatggacgttgttttgacgttgtgtgccggctgggataTGAGA
CACccgtttttcatttcattgttacATTCCAGAGTACAAAAATAAGCTGT
GCAACAATCGACAATGACCTCACCGAAATCTGTCTATGAGACAGGGGCTG
TGAGAGAGAAATGGCATTTGTAGCATTTCACCCGCCTAACCCCTGTCTCG
CGACTCCAAATGCACGCACAATCTTGCTAACTCTTGGACCAAGCTTGCGA
GATAGTTTTCAGTTTGCTCTGATATGAATGGGCGTCCAACTTTTTTCTGA
GTATAAGCGTGTATAATGCCTGTTAACGAATGTCAAACCATCGGGCTATG
ACCAATTTAATAAGTCCCTTCTCCAATGATCTATAAGATATCGCCGTTCA
TTAATTCTTCAATcaatatgaaatatttttcaaattttcctacattattc
att
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015934XLOC_015934Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028152-exon-sc0000665-1491911889:176219..177071TCONS_00028152-exon-sc0000665-1491911889:176219..177071Clytia hemisphaericaexon
TCONS_00028152-exon-sc0000665-1510915933:176219..177071TCONS_00028152-exon-sc0000665-1510915933:176219..177071Clytia hemisphaericaexon
TCONS_00028152-exon-sc0000665-1575043694:176219..177071TCONS_00028152-exon-sc0000665-1575043694:176219..177071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000665supercontigsc0000665:176219..177071 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0749927	0.456482	0.100182	0.382792	0.0756496	0.0625006	0.583025	0.621819	0.343955	0.371045	0.534962	0.296947	0.502776	0.52521	0.454055	0.546499	0.710003	0.359823	0.267652	0.33449	0.801233	0.331933	0.462546	0.243232	1.32778	1.31455	0.173833	0.193108	0.26695	0.290075
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028152 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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