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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028168 ID=TCONS_00028168|Name=TCONS_00028168|organism=Clytia hemisphaerica|type=transcript|length=2304bp
CCAAACTATACTTTCTATCACCACAAACCTTTTTTGATGTATCAAATAAT
TTTATATATTAGCAATAAATCATAAAACCGAAAACGATAAGATTCACGGT
AGTTTTTGGTAAACGAATAAGTGGAAAATAGGTTAATCTAGCCAGTCTTG
TCATTTCAAAGATCAAGACGTGTGGTAAATAACACTCTTAAAATCTGAAT
TTTACTAATTAAGGTGTGTGATAAGGGGTGCTATCAACCACTTAAATTTC
CTTAAATCTCCTCAGAGATTTTAAGCATGTGCTATCACGACTCAAATGAT
TCAGCCTGTCTAGCCTAACTGTTGTTAGCTTTCAGGGGGTATTAAAAGCA
AATGACAATCTTACATGCACCCttataaattgtaaatttttaaattaaac
ttTTGTGAGCGTTACAAGAATAATTTGAGCAGGGGGTTTAGGGACTCAAA
ATCATTAAGTCTGAAATGACCCTAAGATCAATTGAACACctattttgatt
taaagaaaaaaactaaaatgtaaTTGAAAAAGTGATTAAAGACTAGGAAA
AAAGCCTATTAGCCTGCCATAGCCTTTAGATTTTAACtggacaaaatcaa
aaagtattaGTTTGAAGGGAAATATCTCAACaattaccaatttttttttc
agctttaATTTGATTCTTTATACTGCAATCTTTCTTGTAggtagacatga
aatttttaacACTCTTGAGCAAAAATTATTTAGGCTTGGTTTCAAGGATA
GTGATTTTACCATGCAGAAACTGTAGCTATTCAATGAAGAAAGCAAAATC
TAATCCTTACCGCAAAAAAGTGACTCAAAAGAAACCAAAGATTCACAAGG
ACCATCCAGTAATTCAATATTTGAATGAGGTGAAAATTCAGGAGGCAAAT
TTGAAAAGGCCATCCCAAAAGTCAATTTTGGGAGTTGAGACAAACAAGCT
CTTGTACTCATTAGAAACAAATAAAGCTCAAGTGTTGGGATATGATGTAA
CAGAATTTAAGACAAGAGTGCAATTGTTTCTTGATTTGAAAACAAGCTTG
TCTGATGCAATTTCATTATCTCTTGCGATTCCATCAATTTTTCATATCAA
TGATACAAACCTGAGAAGTATTGCAAGGATCTTACGGAGATATAATATAT
CTGTTGAAAAATTGGTATATAAATACCCTTACGTTTGTGCGATGAATAGA
AATCATGTCGAAGAtaatctgaaaatattaagTGAAATTTTCCCCAAAGA
TGAGCTGGATGACTTTATTTTTAATAATCCCCAAATGATTGTCTTCAAAC
TTGATCGAACTTGTGTTGAAAAGCTTACACAGCATAGTTTGGCTTCTGAC
GAAAATACTTTGAAATTAAACAATATAAAAGTGACTTTAAATTCACCAGC
TGTAAATAATGTTCAACTTGACACTTTGGTTCCGGCAGGCAAAACTTTTG
ATCAATTGATTGACGAGGAGATGATAGAATTACTGACATCTTATGATATT
GATTTACAGTATATGTATAAGCTTTGTCCAGAGTTCTTGGTCACTCCAAT
CAACACGATTGAAGAATGCTTGGAGTATATCACAGGCTCACCTTTTTATT
TCGAAGTGGATGATGTGCAGCAACTTTTGAAAACCTATCCTGATATCGTT
TTGATGTTTGATAATGAAGAAACACTCAAGATGGTGTCTTATTTGGAGAC
CGTGTTTACACAAAAAGGACATCTGTATCGAATTCTAAATGAAGATCCAG
AAATGCTGAGAGACTCAGATACGTTTTTTCGTCGaattgagattttcaaa
atatttaaatttaagAAGAGTGATATTGCATTGATTCTTGCACAGCCAGG
TGGGACAAGTTTTTTCACTGATTGTTTGGAGTTTACAGATGACGGAATCA
ATGAGAGCTTGGAGTTTTTCTTCAGCAAAACAGATATTGTTCCCTCACAA
ATTGTATTTTCAGTTCAGGCCTGCTTATCACCAAAGTTTACCAAGATTGC
AAGAGAGAGGGTTTCTTATATGAGGAAGATCCAAAAGATGCATATACTGG
CTAAGAAACGAAAGCGCAAGCGCTCACAAATTACCCTGAAAAGTGTTATT
AAATGTGAACTGGAACATTTCATTACTTCAATATGTGGGACTACTCAAAG
TGATTATGATGTGTTTTTAAAGGATTATACACAAACGAAATAacctgaaa
agttttttttctgattaataaaatttcattgaataaTTGAATCTACTGTT
AAAAAACTTATGCTAAGATTTTACTATTTCACTTTAAATCAACTGAGAAG
GATA Run BLAST on NCBI transcript from alignment at sc0000667:109758..112061+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028168 ID=TCONS_00028168|Name=TCONS_00028168|organism=Clytia hemisphaerica|type=transcript|length=2304bp|location=Sequence derived from alignment at sc0000667:109758..112061+ (Clytia hemisphaerica)
CCAAACTATACTTTCTATCACCACAAACCTTTTTTGATGTATCAAATAAT
TTTATATATTAGCAATAAATCATAAAACCGAAAACGATAAGATTCACGGT
AGTTTTTGGTAAACGAATAAGTGGAAAATAGGTTAATCTAGCCAGTCTTG
TCATTTCAAAGATCAAGACGTGTGGTAAATAACACTCTTAAAATCTGAAT
TTTACTAATTAAGGTGTGTGATAAGGGGTGCTATCAACCACTTAAATTTC
CTTAAATCTCCTCAGAGATTTTAAGCATGTGCTATCACGACTCAAATGAT
TCAGCCTGTCTAGCCTAACTGTTGTTAGCTTTCAGGGGGTATTAAAAGCA
AATGACAATCTTACATGCACCCttataaattgtaaatttttaaattaaac
ttTTGTGAGCGTTACAAGAATAATTTGAGCAGGGGGTTTAGGGACTCAAA
ATCATTAAGTCTGAAATGACCCTAAGATCAATTGAACACctattttgatt
taaagaaaaaaactaaaatgtaaTTGAAAAAGTGATTAAAGACTAGGAAA
AAAGCCTATTAGCCTGCCATAGCCTTTAGATTTTAACtggacaaaatcaa
aaagtattaGTTTGAAGGGAAATATCTCAACaattaccaatttttttttc
agctttaATTTGATTCTTTATACTGCAATCTTTCTTGTAggtagacatga
aatttttaacACTCTTGAGCAAAAATTATTTAGGCTTGGTTTCAAGGATA
GTGATTTTACCATGCAGAAACTGTAGCTATTCAATGAAGAAAGCAAAATC
TAATCCTTACCGCAAAAAAGTGACTCAAAAGAAACCAAAGATTCACAAGG
ACCATCCAGTAATTCAATATTTGAATGAGGTGAAAATTCAGGAGGCAAAT
TTGAAAAGGCCATCCCAAAAGTCAATTTTGGGAGTTGAGACAAACAAGCT
CTTGTACTCATTAGAAACAAATAAAGCTCAAGTGTTGGGATATGATGTAA
CAGAATTTAAGACAAGAGTGCAATTGTTTCTTGATTTGAAAACAAGCTTG
TCTGATGCAATTTCATTATCTCTTGCGATTCCATCAATTTTTCATATCAA
TGATACAAACCTGAGAAGTATTGCAAGGATCTTACGGAGATATAATATAT
CTGTTGAAAAATTGGTATATAAATACCCTTACGTTTGTGCGATGAATAGA
AATCATGTCGAAGAtaatctgaaaatattaagTGAAATTTTCCCCAAAGA
TGAGCTGGATGACTTTATTTTTAATAATCCCCAAATGATTGTCTTCAAAC
TTGATCGAACTTGTGTTGAAAAGCTTACACAGCATAGTTTGGCTTCTGAC
GAAAATACTTTGAAATTAAACAATATAAAAGTGACTTTAAATTCACCAGC
TGTAAATAATGTTCAACTTGACACTTTGGTTCCGGCAGGCAAAACTTTTG
ATCAATTGATTGACGAGGAGATGATAGAATTACTGACATCTTATGATATT
GATTTACAGTATATGTATAAGCTTTGTCCAGAGTTCTTGGTCACTCCAAT
CAACACGATTGAAGAATGCTTGGAGTATATCACAGGCTCACCTTTTTATT
TCGAAGTGGATGATGTGCAGCAACTTTTGAAAACCTATCCTGATATCGTT
TTGATGTTTGATAATGAAGAAACACTCAAGATGGTGTCTTATTTGGAGAC
CGTGTTTACACAAAAAGGACATCTGTATCGAATTCTAAATGAAGATCCAG
AAATGCTGAGAGACTCAGATACGTTTTTTCGTCGaattgagattttcaaa
atatttaaatttaagAAGAGTGATATTGCATTGATTCTTGCACAGCCAGG
TGGGACAAGTTTTTTCACTGATTGTTTGGAGTTTACAGATGACGGAATCA
ATGAGAGCTTGGAGTTTTTCTTCAGCAAAACAGATATTGTTCCCTCACAA
ATTGTATTTTCAGTTCAGGCCTGCTTATCACCAAAGTTTACCAAGATTGC
AAGAGAGAGGGTTTCTTATATGAGGAAGATCCAAAAGATGCATATACTGG
CTAAGAAACGAAAGCGCAAGCGCTCACAAATTACCCTGAAAAGTGTTATT
AAATGTGAACTGGAACATTTCATTACTTCAATATGTGGGACTACTCAAAG
TGATTATGATGTGTTTTTAAAGGATTATACACAAACGAAATAacctgaaa
agttttttttctgattaataaaatttcattgaataaTTGAATCTACTGTT
AAAAAACTTATGCTAAGATTTTACTATTTCACTTTAAATCAACTGAGAAG
GATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028168-exon-sc0000667-1491911889:109758..112061 | TCONS_00028168-exon-sc0000667-1491911889:109758..112061 | Clytia hemisphaerica | exon |
| TCONS_00028168-exon-sc0000667-1510915933:109758..112061 | TCONS_00028168-exon-sc0000667-1510915933:109758..112061 | Clytia hemisphaerica | exon |
| TCONS_00028168-exon-sc0000667-1575043694:109758..112061 | TCONS_00028168-exon-sc0000667-1575043694:109758..112061 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000667 | supercontig | sc0000667:109758..112061 + |
Blast
The following BLAST results are available for this feature:
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