TCONS_00028169 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00028169
Unique Name	TCONS_00028169
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1879

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000667:127696..130959+
coding sequence from alignment at sc0000667:127696..130959+

transcript sequence

>TCONS_00028169 ID=TCONS_00028169|Name=TCONS_00028169|organism=Clytia hemisphaerica|type=transcript|length=1879bp
AGGATTTTGCATTCACggatttatttccgctttggcgcccCATAAGGTTG
GACGATGGGCGGGCTTGGGGGGCTTTCGAATTTTGGGCGGTTCGCCCTCA
ACTCAAGGGTTTAGAGAGATTGGTACCAAGTTGGTTGTCGATTTCGACAT
CTCgatcttttttgatgaaaaacacGCGGTCAAAAATTACTTAATCTTAC
CTAATGCTTAGCGCTGATTGGCTAGTTGTTTTGTATATCTAAAGGTTTGA
CCAATCAATTTCGAGTATTCAAGGAAACATTGCGACATCGCCAAATCGAA
ACAGGTGATCAAGGGCGATCAGAAACCATCAAATCATTTCACTGAAAGAA
ACGAGTAGAGGCGTCGGTGCTTGTGGATCGTTGCTCACAAAAAAAGACCC
TCAAACTTACATATTTTCTACACATCTTTTTACTTACAATCTCAAAATGC
GTGAAGTTATCTCTGTTCATATCGGTCAAGCCGGTGTCCAAATGGGAAAT
GCCTGTTGGGAATTGTACTGTTTGGAACATGGAATCCAACCTGACGGTCA
AATGCCCTCAGACAAAACCATCGGAGGTGGAGATGATTCTTTCAATACCT
TCTTCAGTGAAACTGGAGCTGGAAAGCACGTTCCCAGAGCTGTCTTTGTG
GATTTGGAACCATCAGTAGTTGATGAAATCAGAACTGGTACATACCGTCA
ACTCTTCCATCCTGAACAACTGATCAGTGGAAAAGAAGATGCTGCCAATA
ACTATGCTCGTGGTCACTACACAGTTGGAAAAGAACAGATTGATCAAGTT
TTGGACCGTGTACGAAAACTTGCTGACCAATGTACTGGCCTTCAAGGATT
CTTAATCTTCCACTCTTTCGGTGGAGGTACTGGATCTGGATTCACCTCAT
TGATGATGGAACGTCTCTCAGTAGATTAtggaaagaaatcaaaattggAA
TTTGCTGTGTACCCTGCCCCACAAATCTCAACAGCTGTCGTTGAACCATA
CAATGCTGTCCTTACCACGCACACCACTTTGGAGCACTCAGATTGTGCCT
TCATGGTTGACAACGAAGCCATCTACGACATATGTCGCCGTAACCTTGAT
ATTGAACGTCCAACATACACTAACTTGAACAGATTAATTGGACAAATCGT
CTCCTCAATCACTGCTTCTCTTCGATTCGATGGTGCTTTGAACGTTGACT
TGACAGAGTTCCAAACCAATTTGGTCCCATACCCACGTATTCATTTCCCC
TTGGCAACTTACGCTCCAGTCATCTCTGCCGAGAAAGCTTACCACGAACA
ACTCACTGTCTCTGAAATTACCAACGCCTGCTTTGAACCTGCCAACCAAT
TGGTCAAATGTGATCCACGTCATGGTAAATACATGGCTTGCTGTTTGTTG
TTCCGTGGTGATGTTGTCCCCAAGGATGTCAATGCTGCCATCGCTACCAT
CAAGACTAAACGAACCATCCAGTTTGTTGATTGGTGTCCAACTGGATTCA
AAGTTGGAATCAACTACCAACCACCAACTGCTGTCCCAGGAGGCGATCTT
GCTAAAGTCCAGCGTGCTGTTTGCATGTTGTCCAACACTACTGCTATTGC
TGAAGCTTGGGCTCGTTTGGATCATAAATTCGATTTGATGTACGCCAAAC
GTGCCTTTGTCCACTGGTATGTTGGAGAAGGTAAGAAACACAACAGATTT
AAGTCTTTTTGAACCTCTTCTCTCGATCTAAAATTGACAGAATTTAAAGA
AtctgttttttttaagtttatttaaGTTCCATCCtatttactcttaggtg
ccaaataaacggggccccctgtttgtttatttttcgaaaatttccccCTT
CCccctggaccttattaggaccccccccc

Run BLAST on NCBI

protein sequence of TCONS_00028169-protein

>TCONS_00028169-protein ID=TCONS_00028169-protein|Name=TCONS_00028169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=421bp
MREVISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFN
TFFSETGAGKHVPRAVFVDLEPSVVDEIRTGTYRQLFHPEQLISGKEDAA
NNYARGHYTVGKEQIDQVLDRVRKLADQCTGLQGFLIFHSFGGGTGSGFT
SLMMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNAVLTTHTTLEHSDC
AFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNV
DLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPAN
QLVKCDPRHGKYMACCLLFRGDVVPKDVNAAIATIKTKRTIQFVDWCPTG
FKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYA
KRAFVHWYVGEGKKHNRFKSF

Run BLAST on NCBI

transcript from alignment at sc0000667:127696..130959+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00028169 ID=TCONS_00028169|Name=TCONS_00028169|organism=Clytia hemisphaerica|type=transcript|length=3264bp|location=Sequence derived from alignment at sc0000667:127696..130959+ (Clytia hemisphaerica)
AGGATTTTGCATTCACggatttatttccgctttggcgcccCATAAGGTTG
GACGATGGGCGGGCTTGGGGGGCTTTCGAATTTTGGGCGGTTCGCCCTCA
ACTCAAGGGTTTAGAGAGATTGGTACCAAGTTGGTTGTCGATTTCGACAT
CTCgatcttttttgatgaaaaacacGCGGTCAAAAATTACTTAATCTTAC
CTAATGCTTAGCGCTGATTGGCTAGTTGTTTTGTATATCTAAAGGTTTGA
CCAATCAATTTCGAGTATTCAAGGAAACATTGCGACATCGCCAAATCGAA
ACAGGTGATCAAGGGCGATCAGAAACCATCAAATCATTTCACTGAAAGAA
ACGAGTAGAGGCGTCGGTGCTTGTGGATCGTTGCTCACAAAAAAAGACCC
TCAAACTTACATATTTTCTACACATCTTTTTACTTACAATCTCAAAATGG
TAAGCAAttcttttttctaattttcttaaattttataGCTCTTCTAGGAC
TTATGGCTATGGGTTGAGAATTTAAAGGGAGCAATGTTTGTATGtttata
aaattataatttCCTGTGGCTGTGATGCCAGTAGTTATCCTTCCTTGCCA
GAATATAATTGGCTAATTTCACCTTTCTAGCGTGAAGTTATCTCTGTTCA
TATCGGTCAAGCCGGTGTCCAAATGGGAAATGCCTGTTGGGAATTGTACT
GTTTGGAACATGGAATCCAACCTGACGGTCAAATGCCCTCAGACAAAACC
ATCGGAGGTGGAGATGATTCTTTCAATACCTTCTTCAGTGAAACTGGAGC
TGGAAAGCACGTTCCCAGAGCTGTCTTTGTGGATTTGGAACCATCAGTAG
TTGGTaggtgtattttttaattttaaggcgagaccaatttaatttgttgt
tctacgggcagatcatTAGCCAAATATgggttggtcggtcggtcggtaaa
ataagaataaatttttcatttatcagggttggtaaagtaccgaaagtgtt
ttctaaaaaatatctggatcaaaaatccactttttttcatcttcgatgaa
gatcataataaaatcttagtgtatggaatgctagtcagaaaatctcagaa
aatctgccgtatactatctttgctttctgatttgaatgatggcgctactt
tttcccccatcagaattagtaaaggcaaaaagtagttgagctccagctcc
tggactaATGAAATGCTTGATTTTTTAAACTCTCAATTTTTAagtttcag
ctttattcaaatttgattcttacaaataactagtgtgtaaaatatattgt
agtggaaattcaatatttaggGTCAGTCGGGGcccgaagaagaacaaatt
aaattggtctcgcctaataatttcaataaaaataactttttgatttaCCA
AATCCAGAAGTACAGCCCAGTCTGGaaagaaaagaatatttacGCCAGAG
ATTTCTTGGCGTAGCCTTTGTGTAAGCCTAATCCAAAGTCTGCGCCGGAG
ATATCCGGTGTACATGCCTTAATTTCCAGATTGGAGCTGATTGGAGTACA
GCAGGCTGAATTATACGTACTGTATAGTTCCTGTCTTTTCAAAACTGAAA
TGTGGAATGCGAGGGTGCTATCAAATTCTGGCTTTGAAAGCTTGTCTTGC
TGAAGGGTGTTTATACCATTTAGCTAGCAAAAAactgccaaatttaattt
tttttctgccatttgccaaattttatgtTGTCTTGTGCTATTTCTGGCCT
TAAAAtaggttttttttctttaataggGTTTTTTGGCTAAAAATATCCTT
CATCCAAAGTAAgtttctgccaaattaaattccctttgAAAACCTTTTGA
ACATCCGCAAGATTGAATTCCTGCTAAGATTTCTTCCCTCAAGGTAcctt
atcagtcttattttttagcccttttgacctttttttttttggcttatAGC
AGGTTAGGAGCAGGTTTAAAAGGAAGTCTGAGGTCCCAGGTAACTGTAAG
ACTATAGTTTAATATGACAAAAAAGATTAATGGATTTTATTATAATCTAA
TTTTTAGATGAAATCAGAACTGGTACATACCGTCAACTCTTCCATCCTGA
ACAACTGATCAGTGGAAAAGAAGATGCTGCCAATAACTATGCTCGTGGTC
ACTACACAGTTGGAAAAGAACAGATTGATCAAGTTTTGGACCGTGTACGA
AAACTTGCTGACCAATGTACTGGCCTTCAAGGATTCTTAATCTTCCACTC
TTTCGGTGGAGGTACTGGATCTGGATTCACCTCATTGATGATGGAACGTC
TCTCAGTAGATTAtggaaagaaatcaaaattggAATTTGCTGTGTACCCT
GCCCCACAAATCTCAACAGCTGTCGTTGAACCATACAATGCTGTCCTTAC
CACGCACACCACTTTGGAGCACTCAGATTGTGCCTTCATGGTTGACAACG
AAGCCATCTACGACATATGTCGCCGTAACCTTGATATTGAACGTCCAACA
TACACTAACTTGAACAGATTAATTGGACAAATCGTCTCCTCAATCACTGC
TTCTCTTCGATTCGATGGTGCTTTGAACGTTGACTTGACAGAGTTCCAAA
CCAATTTGGTCCCATACCCACGTATTCATTTCCCCTTGGCAACTTACGCT
CCAGTCATCTCTGCCGAGAAAGCTTACCACGAACAACTCACTGTCTCTGA
AATTACCAACGCCTGCTTTGAACCTGCCAACCAATTGGTCAAATGTGATC
CACGTCATGGTAAATACATGGCTTGCTGTTTGTTGTTCCGTGGTGATGTT
GTCCCCAAGGATGTCAATGCTGCCATCGCTACCATCAAGACTAAACGAAC
CATCCAGTTTGTTGATTGGTGTCCAACTGGATTCAAAGTTGGAATCAACT
ACCAACCACCAACTGCTGTCCCAGGAGGCGATCTTGCTAAAGTCCAGCGT
GCTGTTTGCATGTTGTCCAACACTACTGCTATTGCTGAAGCTTGGGCTCG
TTTGGATCATAAATTCGATTTGATGTACGCCAAACGTGCCTTTGTCCACT
GGTATGTTGGAGAAGGTAAGAAACACAACAGATTTAAGTCTTTTTGAACC
TCTTCTCTCGATCTAAAATTGACAGAATTTAAAGAAtctgttttttttaa
gtttatttaaGTTCCATCCtatttactcttaggtgccaaataaacggggc
cccctgtttgtttatttttcgaaaatttccccCTTCCccctggaccttat
taggaccccccccc

Coding sequence (CDS) from alignment at sc0000667:127696..130959+

>TCONS_00028169 ID=TCONS_00028169|Name=TCONS_00028169|organism=Clytia hemisphaerica|type=CDS|length=3798bp|location=Sequence derived from alignment at sc0000667:127696..130959+ (Clytia hemisphaerica)
ATGCGTGAAGTTATCTCTGTTCATATCGGTCAAGCCGGTGTCCAAATGGG
AAATGCCTGTTGGGAATTGTACTGTTTGGAACATGGAATCCAACCTGACG
GTCAAATGCCCTCAGACAAAACCATCGGAGGTGGAGATGATTCTTTCAAT
ACCTTCTTCAGTGAAACTGGAGCTGGAAAGCACGTTCCCAGAGCTGTCTT
TGTGGATTTGGAACCATCAGTAGTTGATGAAATCAGAACTGGTACATACC
GTCAACTCTTCCATCCTGAACAACTGATCAGTGGAAAAGAAGATGCTGCC
AATAACTATGCTCGTGGTCACTACACAGTTGGAAAAGAACAGATTGATCA
AGTTTTGGACCGTGTACGAAAACTTGCTGACCAATGTACTGGCCTTCAAG
GATTCTTAATCTTCCACTCTTTCGGTGGAGGTACTGGATCTGGATTCACC
TCATTGATGATGGAACGTCTCTCAGTAGATTAtggaaagaaatcaaaatt
ggAATTTGCTGTGTACCCTGCCCCACAAATCTCAACAGCTGTCGTTGAAC
CATACAATGCTGTCCTTACCACGCACACCACTTTGGAGCACTCAGATTGT
GCCTTCATGGTTGACAACGAAGCCATCTACGACATATGTCGCCGTAACCT
TGATATTGAACGTCCAACATACACTAACTTGAACAGATTAATTGGACAAA
TCGTCTCCTCAATCACTGCTTCTCTTCGATTCGATGGTGCTTTGAACGTT
GACTTGACAGAGTTCCAAACCAATTTGGTCCCATACCCACGTATTCATTT
CCCCTTGGCAACTTACGCTCCAGTCATCTCTGCCGAGAAAGCTTACCACG
AACAACTCACTGTCTCTGAAATTACCAACGCCTGCTTTGAACCTGCCAAC
CAATTGGTCAAATGTGATCCACGTCATGGTAAATACATGGCTTGCTGTTT
GTTGTTCCGTGGTGATGTTGTCCCCAAGGATGTCAATGCTGCCATCGCTA
CCATCAAGACTAAACGAACCATCCAGTTTGTTGATTGGTGTCCAACTGGA
TTCAAAGTTGGAATCAACTACCAACCACCAACTGCTGTCCCAGGAGGCGA
TCTTGCTAAAGTCCAGCGTGCTGTTTGCATGTTGTCCAACACTACTGCTA
TTGCTGAAGCTTGGGCTCGTTTGGATCATAAATTCGATTTGATGTACGCC
AAACGTGCCTTTGTCCACTGGTATGTTGGAGAAGGTAAGAAACACAACAG
ATTTAAGTCTTTTTGAATGCGTGAAGTTATCTCTGTTCATATCGGTCAAG
CCGGTGTCCAAATGGGAAATGCCTGTTGGGAATTGTACTGTTTGGAACAT
GGAATCCAACCTGACGGTCAAATGCCCTCAGACAAAACCATCGGAGGTGG
AGATGATTCTTTCAATACCTTCTTCAGTGAAACTGGAGCTGGAAAGCACG
TTCCCAGAGCTGTCTTTGTGGATTTGGAACCATCAGTAGTTGATGAAATC
AGAACTGGTACATACCGTCAACTCTTCCATCCTGAACAACTGATCAGTGG
AAAAGAAGATGCTGCCAATAACTATGCTCGTGGTCACTACACAGTTGGAA
AAGAACAGATTGATCAAGTTTTGGACCGTGTACGAAAACTTGCTGACCAA
TGTACTGGCCTTCAAGGATTCTTAATCTTCCACTCTTTCGGTGGAGGTAC
TGGATCTGGATTCACCTCATTGATGATGGAACGTCTCTCAGTAGATTAtg
gaaagaaatcaaaattggAATTTGCTGTGTACCCTGCCCCACAAATCTCA
ACAGCTGTCGTTGAACCATACAATGCTGTCCTTACCACGCACACCACTTT
GGAGCACTCAGATTGTGCCTTCATGGTTGACAACGAAGCCATCTACGACA
TATGTCGCCGTAACCTTGATATTGAACGTCCAACATACACTAACTTGAAC
AGATTAATTGGACAAATCGTCTCCTCAATCACTGCTTCTCTTCGATTCGA
TGGTGCTTTGAACGTTGACTTGACAGAGTTCCAAACCAATTTGGTCCCAT
ACCCACGTATTCATTTCCCCTTGGCAACTTACGCTCCAGTCATCTCTGCC
GAGAAAGCTTACCACGAACAACTCACTGTCTCTGAAATTACCAACGCCTG
CTTTGAACCTGCCAACCAATTGGTCAAATGTGATCCACGTCATGGTAAAT
ACATGGCTTGCTGTTTGTTGTTCCGTGGTGATGTTGTCCCCAAGGATGTC
AATGCTGCCATCGCTACCATCAAGACTAAACGAACCATCCAGTTTGTTGA
TTGGTGTCCAACTGGATTCAAAGTTGGAATCAACTACCAACCACCAACTG
CTGTCCCAGGAGGCGATCTTGCTAAAGTCCAGCGTGCTGTTTGCATGTTG
TCCAACACTACTGCTATTGCTGAAGCTTGGGCTCGTTTGGATCATAAATT
CGATTTGATGTACGCCAAACGTGCCTTTGTCCACTGGTATGTTGGAGAAG
GTAAGAAACACAACAGATTTAAGTCTTTTTGAATGCGTGAAGTTATCTCT
GTTCATATCGGTCAAGCCGGTGTCCAAATGGGAAATGCCTGTTGGGAATT
GTACTGTTTGGAACATGGAATCCAACCTGACGGTCAAATGCCCTCAGACA
AAACCATCGGAGGTGGAGATGATTCTTTCAATACCTTCTTCAGTGAAACT
GGAGCTGGAAAGCACGTTCCCAGAGCTGTCTTTGTGGATTTGGAACCATC
AGTAGTTGATGAAATCAGAACTGGTACATACCGTCAACTCTTCCATCCTG
AACAACTGATCAGTGGAAAAGAAGATGCTGCCAATAACTATGCTCGTGGT
CACTACACAGTTGGAAAAGAACAGATTGATCAAGTTTTGGACCGTGTACG
AAAACTTGCTGACCAATGTACTGGCCTTCAAGGATTCTTAATCTTCCACT
CTTTCGGTGGAGGTACTGGATCTGGATTCACCTCATTGATGATGGAACGT
CTCTCAGTAGATTAtggaaagaaatcaaaattggAATTTGCTGTGTACCC
TGCCCCACAAATCTCAACAGCTGTCGTTGAACCATACAATGCTGTCCTTA
CCACGCACACCACTTTGGAGCACTCAGATTGTGCCTTCATGGTTGACAAC
GAAGCCATCTACGACATATGTCGCCGTAACCTTGATATTGAACGTCCAAC
ATACACTAACTTGAACAGATTAATTGGACAAATCGTCTCCTCAATCACTG
CTTCTCTTCGATTCGATGGTGCTTTGAACGTTGACTTGACAGAGTTCCAA
ACCAATTTGGTCCCATACCCACGTATTCATTTCCCCTTGGCAACTTACGC
TCCAGTCATCTCTGCCGAGAAAGCTTACCACGAACAACTCACTGTCTCTG
AAATTACCAACGCCTGCTTTGAACCTGCCAACCAATTGGTCAAATGTGAT
CCACGTCATGGTAAATACATGGCTTGCTGTTTGTTGTTCCGTGGTGATGT
TGTCCCCAAGGATGTCAATGCTGCCATCGCTACCATCAAGACTAAACGAA
CCATCCAGTTTGTTGATTGGTGTCCAACTGGATTCAAAGTTGGAATCAAC
TACCAACCACCAACTGCTGTCCCAGGAGGCGATCTTGCTAAAGTCCAGCG
TGCTGTTTGCATGTTGTCCAACACTACTGCTATTGCTGAAGCTTGGGCTC
GTTTGGATCATAAATTCGATTTGATGTACGCCAAACGTGCCTTTGTCCAC
TGGTATGTTGGAGAAGGTAAGAAACACAACAGATTTAAGTCTTTTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_015944	XLOC_015944	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00028169-protein	TCONS_00028169-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00028169-exon-sc0000667-1491911889:127696..128144	TCONS_00028169-exon-sc0000667-1491911889:127696..128144	Clytia hemisphaerica	exon
TCONS_00028169-exon-sc0000667-1510915933:127696..128144	TCONS_00028169-exon-sc0000667-1510915933:127696..128144	Clytia hemisphaerica	exon
TCONS_00028169-exon-sc0000667-1575043694:127696..128144	TCONS_00028169-exon-sc0000667-1575043694:127696..128144	Clytia hemisphaerica	exon
TCONS_00028169-exon-sc0000667-1491911889:128326..128548	TCONS_00028169-exon-sc0000667-1491911889:128326..128548	Clytia hemisphaerica	exon
TCONS_00028169-exon-sc0000667-1510915933:128326..128548	TCONS_00028169-exon-sc0000667-1510915933:128326..128548	Clytia hemisphaerica	exon
TCONS_00028169-exon-sc0000667-1575043694:128326..128548	TCONS_00028169-exon-sc0000667-1575043694:128326..128548	Clytia hemisphaerica	exon
TCONS_00028169-exon-sc0000667-1491911889:129753..130959	TCONS_00028169-exon-sc0000667-1491911889:129753..130959	Clytia hemisphaerica	exon
TCONS_00028169-exon-sc0000667-1510915933:129753..130959	TCONS_00028169-exon-sc0000667-1510915933:129753..130959	Clytia hemisphaerica	exon
TCONS_00028169-exon-sc0000667-1575043694:129753..130959	TCONS_00028169-exon-sc0000667-1575043694:129753..130959	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000667	supercontig	sc0000667:127696..130959 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
428.46	489.17	568.004	421.726	1825.57	1366.25	1083.88	1249.41	1413.32	1822.5	2045.05	1254.48	1726.24	1996.25	1384.15	1908.91	1285.86	1414.81	1312.75	1725.29	1528.83	1566.54	1447.79	1390.78	957.553	1116.41	1585.29	1814.52	1819.81	1796.95

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR002452	Alpha_tubulin
IPR000217	Tubulin
IPR003008	Tubulin_FtsZ_GTPase
IPR018316	Tubulin/FtsZ_2-layer-sand-dom
IPR017975	Tubulin_CS
IPR008280	Tub_FtsZ_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding
GO:0005200	structural constituent of cytoskeleton
GO:0003924	GTPase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005874	microtubule

Vocabulary: **Biological Process**
Term	Definition
GO:0007017	microtubule-based process

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0005874	microtubule
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0005200	structural constituent of cytoskeleton

Blast

[Close]

BLAST of TCONS_00028169 vs. Swiss-Prot (Human)
Match: TBA1A (Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A PE=1 SV=1)

HSP 1 Score: 814.298 bits (2102), Expect = 0.000e+0
Identity = 389/418 (93.06%), Postives = 410/418 (98.09%), Query Frame = 3

Query:  447 MREVISVHIGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPSVVDEIRTGTYRQLFHPEQLISGKEDAANNYARGHYTVGKEQIDQVLDRVRKLADQCTGLQGFLIFHXXXXXXXXXXXXLMMERLSVDYGKKSKLEFAVYPAPQISTAVVEPYNAVLTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFEPANQLVKCDPRHGKYMACCLLFRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTAVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGKKHNRF 1700
            MRE IS+H+GQAGVQ+GNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEP+V+DE+RTGTYRQLFHPEQLI+GKEDAANNYARGHYT+GKE ID VLDR+RKLADQCTGLQGFL+FHSFGGGTGSGFTSL+MERLSVDYGKKSKLEF++YPAPQ+STAVVEPYN++LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+V+EITNACFEPANQ+VKCDPRHGKYMACCLL+RGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPT VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEG +   F
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEF 418

The following BLAST results are available for this feature:

BLAST of TCONS_00028169 vs. Swiss-Prot (Human)

BLAST of TCONS_00028169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
TBA1A	0.000e+0	93.06	Tubulin alpha-1A chain OS=Homo sapiens GN=TUBA1A P...	[more]

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TCONS_00028169 (transcript) - C. hemisphaerica