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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028173 ID=TCONS_00028173|Name=TCONS_00028173|organism=Clytia hemisphaerica|type=transcript|length=2148bpRun BLAST on NCBI protein sequence of TCONS_00028173-protein >TCONS_00028173-protein ID=TCONS_00028173-protein|Name=TCONS_00028173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=617bp SKTWIKISFLSCLVFVALAETGEADKVPEAPKEDDGVLVLTDDNFKGVIERun BLAST on NCBI transcript from alignment at sc0000667:141192..161019+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028173 ID=TCONS_00028173|Name=TCONS_00028173|organism=Clytia hemisphaerica|type=transcript|length=19828bp|location=Sequence derived from alignment at sc0000667:141192..161019+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000667:141192..161019+ >TCONS_00028173 ID=TCONS_00028173|Name=TCONS_00028173|organism=Clytia hemisphaerica|type=CDS|length=18540bp|location=Sequence derived from alignment at sc0000667:141192..161019+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028173 vs. Swiss-Prot (Human)
Match: PDIA4 (Protein disulfide-isomerase A4 OS=Homo sapiens GN=PDIA4 PE=1 SV=2) HSP 1 Score: 583.178 bits (1502), Expect = 0.000e+0 Identity = 295/588 (50.17%), Postives = 399/588 (67.86%), Query Frame = 3
Query: 105 DGVLVLTDDNFKGVIEKEKFVLVEFYAPWCGHCKXXXXXXXXXXKQLKKSENPVPLAKVDCTVEKDVCNTHQVQGYPTLKWFKDGEASDYDGPRDHDGIVSYVLERSDPNYKPPPEAVLTLTKDNFDEITQKEELMLVEFYAPWCGHCKKIGPELEKAAKVLQKREKPISIGKVDATVETDLATKFEVTGYPTMFIMRNGKKYEYKGPRNEPEISEYLINQEGEATKLKATMKEVKNFIKDPNNNDPVILAVADNAEDPIYKLFVEANNDVRDDYSFGHTFAKEAKKYFGLKKSAILLIQPDHLRSKHEAKQHVYQDESGSP--SEVQEFYKKNYIPLVGFFRTDNE-NRFKKKPMVLVFYDVNFSPTYRSITQFWRSKVVEVAKEFPDVQFAVANEEDSEGRLKDLGLTESGEDVNVGAYDAAGRRYALVDEEFSEDTLTEFVEEFLKGNLKPVIKSQRAAPKAKPGKVQVVTGNTFDQIIMDESKEVFIEFYAPWCGHCKAIEGYINKLAAKYKGEKDIIIAKMDGTLNEGPS-QYAFEGFPTIYYSLPGKKNEPIKLD-GKRDMDALVKFIETNSKVLKNKKTEL 1853
+GVLVL D NF + + VL+EFYAPWCGHCK AP Y + A LK + P+P+AK+D T + + V GYPT+K K G+A DY+G R + IV+ V E S P++ PPPE L LTK+NFDE+ +++LVEFYAPWCGHCKK+ PE EKAAK L KR PI + KVDAT ETDLA +F+V+GYPT+ I R G+ Y+Y GPR + I +Y+I Q G +K T+K+V+ F+KD +D +I+ V DP Y+ + +A N++R+DY F HTF+ E K+ + + ++++QP+ +SK+E + H+ D GS S +++F K +PLVG + N+ R+ ++P+V+V+Y V+FS YR+ TQFWRSKV+EVAK+FP+ FA+A+EED G +KDLGL+ESGEDVN D +G+++A+ EEF DTL EFV F KG LKPVIKSQ PK G V+VV G TFD I+MD K+V IEFYAPWCGHCK +E N LA KYKG+K ++IAKMD T N+ PS +Y EGFPTIY++ G K P+K + G RD++ L KFIE ++ L K EL
Sbjct: 62 NGVLVLNDANFDNFVADKDTVLLEFYAPWCGHCKQFAPEYEKIANILKDKDPPIPVAKIDATSASVLASRFDVSGYPTIKILKKGQAVDYEGSRTQEEIVAKVREVSQPDWTPPPEVTLVLTKENFDEVVNDADIILVEFYAPWCGHCKKLAPEYEKAAKELSKRSPPIPLAKVDATAETDLAKRFDVSGYPTLKIFRKGRPYDYNGPREKYGIVDYMIEQSGPPSKEILTLKQVQEFLKD--GDDVIIIGVFKGESDPAYQQYQDAANNLREDYKFHHTFSTEIAKFLKVSQGQLVVMQPEKFQSKYEPRSHM-MDVQGSTQDSAIKDFVLKYALPLVGHRKVSNDAKRYTRRPLVVVYYSVDFSFDYRAATQFWRSKVLEVAKDFPEYTFAIADEEDYAGEVKDLGLSESGEDVNAAILDESGKKFAMEPEEFDSDTLREFVTAFKKGKLKPVIKSQ-PVPKNNKGPVKVVVGKTFDSIVMDPKKDVLIEFYAPWCGHCKQLEPVYNSLAKKYKGQKGLVIAKMDATANDVPSDRYKVEGFPTIYFAPSGDKKNPVKFEGGDRDLEHLSKFIEEHATKLSRTKEEL 645 The following BLAST results are available for this feature:
BLAST of TCONS_00028173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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