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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028177 ID=TCONS_00028177|Name=TCONS_00028177|organism=Clytia hemisphaerica|type=transcript|length=1916bp
CAATAAATGGCGTTCGGATATAATAACAAAACAttataaaaagttatgaa
aattgTCTTGTTATCAAATTCACTTACTAATAGGAAACCTTAGAAGGATG
TATCAACTTTCAGGAGAAAAAGatgttaaaaaaataagaagtGATATCAT
TTTTGAgcaagaagaaagaagaaaaaccgaaaattcaGGACGAAAGATTC
CATGTTTTTGTATTGAAAATGGTAAACATCCGAAGTGGAACCTTTGTCCA
ATTGATACGACTCCGAAACTTTATTTTGTCAACAATAACAGGCCAGGAAA
CAACAGAACGAAATCAAAGATACCTTTACTGAAAACATCGAACGAAAAGT
TGAAACTTCCTTCTTTAAGCTCACAAAATTCACAATGGGTTACAAGTACA
TGTTACAGAAGAAGTAAGATTCCGAGAAGAATTGACAGCAAAGAGACCGG
AAATGATAAAGAACAACAACATTTGATGACCCTTCAGTTTCGTGTAGATT
CCGCTAACACGGACCgaagaaaaactttgaagaaagGCTACCACGAAAAA
GGTTTTTACAAGGCGCCACGCCCACACCATTTTCGAGATGATATCCATCG
ACCACTTCAATCAACCGAAGAGCTTGGGAAGCCGGACTTTAAAGTGAACA
TAGAGCACGATCCAAGAAATATCAACTTCAAAAAACATACCTTAAGAAAC
CTAAGGATCCCTGAGTTAGCATCAACGAAAGATGGCGATACATCGCGTTC
GTTGGATAGACTTCCTATGGAAACGTACAAAGAAAAAGAACCGCGCTTCG
AAAGCAAATTACTTTTTCCGAAAGGGAAATATCGTAAAGGTCGTGATCCA
AAAGATGTTCTCTACGAGAAGAtcgcaaaagcaaaaaatctacCCATCTC
CAATAAAGAGTTCGAAATTCAAAGACCTGATATCAATGATCATAAGACAG
TTGATTTATTAGAAATAACAAGAAATGGTCCACGTCATAAATGTCTTAAC
CCCGAAGAATGAAACTCCATCAATAATGAGAAAGGAAATGGGCGGACAAC
AACAAACTTTAAAAGACATACGTCTGACGTGTTATAATGCATCAAAGAGC
TACGGAATTAAGCAAGATGTCAGTAACCATCAATAGGCGATGATGTTTCC
CAACTCAAGGTTGTCGAAAATCCGAATTTACGATAAGGGTGGCTAAGATG
CAAATCGCATGCGAATCTTCATTTCTGTAAGCTTTGGCATAACAGGATCA
GAAATCATATCAAGCTCGAATTCGTCTGGATCGAGATACcatatttcatt
aaaaaacaacaaaatgtttatttacagttaaaaatatctacaaaaatatA
AACCCCATCCAAACAGGATataaaaataaagagaaaaaacgTCGTAATGT
CAGGTGGTCGGTACTAATCGTCGCTGTCGTAAGCTAATCGTTCGATTTCG
CCGCGTaacctaaaaatatgtgttttCAAGACAGAATAATTTAACTATTT
CTAATTATCATTATAAGGAGAAGTATAAATTTTCAATCAACTTAAATGAA
CATTGTCGTGGAGAGTGCTCGATACGTTTCCATTGCCaaatatcaaattt
catttttcttcaaaaatttaaacattctACAGTTTGTTTCACGCTTACGC
AACCGCAGTATAAATATTaactttttaagaattttatggatattttttaa
agtgtattttgtgaattatttttacagtaattttgatataaataaaGAAA
GCGTCTAAAACTTATATCGGTAGCTTCTTTGTGGGTTTACTTAACGCAAG
TCTGACCTAAAAATATCATTACCCGAGACTACGTAACTAACAAGCTTGCC
ATCAGAACTTGCAACTATGGATACATACCTGTCTATGATTGGGGTGTATA
CTTCACAGACTTGGTG Run BLAST on NCBI protein sequence of TCONS_00028177-protein >TCONS_00028177-protein ID=TCONS_00028177-protein|Name=TCONS_00028177-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp
MYQLSGEKDVKKIRSDIIFEQEERRKTENSGRKIPCFCIENGKHPKWNLC
PIDTTPKLYFVNNNRPGNNRTKSKIPLLKTSNEKLKLPSLSSQNSQWVTS
TCYRRSKIPRRIDSKETGNDKEQQHLMTLQFRVDSANTDRRKTLKKGYHE
KGFYKAPRPHHFRDDIHRPLQSTEELGKPDFKVNIEHDPRNINFKKHTLR
NLRIPELASTKDGDTSRSLDRLPMETYKEKEPRFESKLLFPKGKYRKGRD
PKDVLYEKIAKAKNLPISNKEFEIQRPDINDHKTVDLLEITRNGPRHKCL
NPEE Run BLAST on NCBI transcript from alignment at sc0000667:96509..99265- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028177 ID=TCONS_00028177|Name=TCONS_00028177|organism=Clytia hemisphaerica|type=transcript|length=2757bp|location=Sequence derived from alignment at sc0000667:96509..99265- (Clytia hemisphaerica)
CAATAAATGGCGTTCGGATATAATAACAAAACATTATAAAAAGTTATGAA
AATTGTCTTGTTATCAAATTCACTTACTAATAGGAAACCTTAGAAGGATG
TATCAACTTTCAGGAGAAAAAGATGTTAAAAAAATAAGAAGTGATATCAT
TTTTGAGCAAGAAGAAAGAAGAAAAACCGAAAATTCAGGACGAAAGATTC
CATGTTTTTGTATTGAAAATGGTAAACATCCGAAGTGGAACCTTTGTCCA
ATTGATACGACTCCGAAACTTTATTTTGTCAACAATAACAGGCCAGGAAA
CAACAGAACGAAATCAAAGATACCTTTACTGAAAACATCGAACGAAAAGT
TGAAACTTCCTTCTTTAAGCTCACAAAATTCACAATGGGTTACAAGTACA
TGTTACAGAAGAAGTAAGATTCCGAGAAGAATTGACAGCAAAGAGACCGG
AAATGATAAAGAACAACAACATTTGATGACCCTTCAGTTTCGTGTAGATT
CCGCTAACACGGACCGAAGAAAAACTTTGAAGAAAGGCTACCACGAAAAA
GGTTTTTACAAGGCGCCACGCCCACACCATTTTCGAGATGATATCCATCG
ACCAGTAAGTTTACGAGCAGCCATTAGCGTATTGACCACACCCACTTGTA
AATTATTAGATTAGATTGACGACTGACATTGTGCGCAAGAAACTGCGTCA
ATGTCAATGCAATAGCTTCACAATTTTGACGTCATTCACCCTCTCTCATT
TGATTCGAACTTCAAACCTAAGAGAAGTGCCAACCCTACCCACGGTCGTT
TTAAAGAAATCGAGAAAAATTTAAACATTTTCAGGATTTTTTCTGCTCGT
CAAAATTAGTTCTCGCCAAAATAAGTTCCTCTATTCCCTTCACCTATATT
TTTCCGTAGTCCCCAGGTTGGCAAATATATTGACTGTTGTTAGTTATAGC
AAAAGTCGATAAAAAAAGTTAANGGTTGGCAAATATATTGACTGTTAGTT
ATAGTCAAAGTCGATAAAAAAAGTTAATAAAGATGATTTTACTCTTTCCA
TTACTGTTCCTTCCTGTTTTTAGCTTCAATCAACCGAAGAGCTTGGGAAG
CCGGACTTTAAAGTGAACATAGAGCACGATCCAAGAAATATCAACTTCAA
AAAACATACCTTAAGAAACCTAAGGATCCCTGGTAAGAAATATTCTAGTC
GTCCACATTTGAAGAAAATTATATCACTGAAAGTAAAAGCTGGAGCGCAG
AGGGCCAAAATTTCCATTCTAGTAGCCAATTTTAATCAATTTAATTCAGC
AAAGGATCAACATGAAAGAAAAGAATTTTAGAGTCCGGGGTTTGAAAATG
AAGTCAATTCAAAAGGGCACTGAGCAAATTTTAGAAATTCTTCTCAACTT
TTTTTCAATAGAGTTAGCATCAACGAAAGATGGCGATACATCGCGTTCGT
TGGATAGACTTCCTATGGAAACGTACAAAGAAAAAGAACCGCGCTTCGAA
AGCAAATTACTTTTTCCGAAAGGGGTAAGTTTACGTTAATTCAAAAAACA
AAGTTACTGTAGTGTCTTTAAAAACTTCTAAAAGGTATTCTGACAAGCTA
CAAACATTGAAAATCATCTTCAAATTTAATCTTTTACTTTAAAATTGATA
TTAATAATTCATTTTAGAAATATCGTAAAGGTCGTGATCCAAAAGATGTT
CTCTACGAGAAGATCGCAAAAGCAAAAAATCTACCCATCTCCAATAAAGA
GTTCGAAATTCAAAGACCTGATATCAATGATCATAAGACAGTTGATTTAT
TAGAAATAACAAGAAATGGTCCACGTCATAAATGTCTTAACCCCGAAGAA
TGAAACTCCATCAATAATGAGAAAGGAAATGGGCGGACAACAACAAACTT
TAAAAGACATACGTCTGACGTGTTATAATGCATCAAAGAGCTACGGAATT
AAGCAAGATGTCAGTAACCATCAATAGGCGATGATGTTTCCCAACTCAAG
GTTGTCGAAAATCCGAATTTACGATAAGGGTGGCTAAGATGCAAATCGCA
TGCGAATCTTCATTTCTGTAAGCTTTGGCATAACAGGATCAGAAATCATA
TCAAGCTCGAATTCGTCTGGATCGAGATACCATATTTCATTAAAAAACAA
CAAAATGTTTATTTACAGTTAAAAATATCTACAAAAATATAAACCCCATC
CAAACAGGATATAAAAATAAAGAGAAAAAACGTCGTAATGTCAGGTGGTC
GGTACTAATCGTCGCTGTCGTAAGCTAATCGTTCGATTTCGCCGCGTAAC
CTAAAAATATGTGTTTTCAAGACAGAATAATTTAACTATTTCTAATTATC
ATTATAAGGAGAAGTATAAATTTTCAATCAACTTAAATGAACATTGTCGT
GGAGAGTGCTCGATACGTTTCCATTGCCAAATATCAAATTTCATTTTTCT
TCAAAAATTTAAACATTCTACAGTTTGTTTCACGCTTACGCAACCGCAGT
ATAAATATTAACTTTTTAAGAATTTTATGGATATTTTTTAAAGTGTATTT
TGTGAATTATTTTTACAGTAATTTTGATATAAATAAAGAAAGCGTCTAAA
ACTTATATCGGTAGCTTCTTTGTGGGTTTACTTAACGCAAGTCTGACCTA
AAAATATCATTACCCGAGACTACGTAACTAACAAGCTTGCCATCAGAACT
TGCAACTATGGATACATACCTGTCTATGATTGGGGTGTATACTTCACAGA
CTTGGTG Coding sequence (CDS) from alignment at sc0000667:96509..99265- >TCONS_00028177 ID=TCONS_00028177|Name=TCONS_00028177|organism=Clytia hemisphaerica|type=CDS|length=3660bp|location=Sequence derived from alignment at sc0000667:96509..99265- (Clytia hemisphaerica)
AAATATCGTAAAGGTCGTGATCCAAAAGATGTTCTCTACGAGAAGATCGC
AAAAGCAAAAAATCTACCCATCTCCAATAAAGAGTTCGAAATTCAAAGAC
CTGATATCAATGATCATAAGACAGTTGATTTATTAGAAATAACAAGAAAT
GGTCCACGTCATAAATGTCTTAACCCCGAAGAATGAAGTTAGCATCAACG
AAAGATGGCGATACATCGCGTTCGTTGGATAGACTTCCTATGGAAACGTA
CAAAGAAAAAGAACCGCGCTTCGAAAGCAAATTACTTTTTCCGAAAGGGC
TTCAATCAACCGAAGAGCTTGGGAAGCCGGACTTTAAAGTGAACATAGAG
CACGATCCAAGAAATATCAACTTCAAAAAACATACCTTAAGAAACCTAAG
GATCCCTGATGTATCAACTTTCAGGAGAAAAAGATGTTAAAAAAATAAGA
AGTGATATCATTTTTGAGCAAGAAGAAAGAAGAAAAACCGAAAATTCAGG
ACGAAAGATTCCATGTTTTTGTATTGAAAATGGTAAACATCCGAAGTGGA
ACCTTTGTCCAATTGATACGACTCCGAAACTTTATTTTGTCAACAATAAC
AGGCCAGGAAACAACAGAACGAAATCAAAGATACCTTTACTGAAAACATC
GAACGAAAAGTTGAAACTTCCTTCTTTAAGCTCACAAAATTCACAATGGG
TTACAAGTACATGTTACAGAAGAAGTAAGATTCCGAGAAGAATTGACAGC
AAAGAGACCGGAAATGATAAAGAACAACAACATTTGATGACCCTTCAGTT
TCGTGTAGATTCCGCTAACACGGACCGAAGAAAAACTTTGAAGAAAGGCT
ACCACGAAAAAGGTTTTTACAAGGCGCCACGCCCACACCATTTTCGAGAT
GATATCCATCGACCAAAATATCGTAAAGGTCGTGATCCAAAAGATGTTCT
CTACGAGAAGATCGCAAAAGCAAAAAATCTACCCATCTCCAATAAAGAGT
TCGAAATTCAAAGACCTGATATCAATGATCATAAGACAGTTGATTTATTA
GAAATAACAAGAAATGGTCCACGTCATAAATGTCTTAACCCCGAAGAATG
AAGTTAGCATCAACGAAAGATGGCGATACATCGCGTTCGTTGGATAGACT
TCCTATGGAAACGTACAAAGAAAAAGAACCGCGCTTCGAAAGCAAATTAC
TTTTTCCGAAAGGGCTTCAATCAACCGAAGAGCTTGGGAAGCCGGACTTT
AAAGTGAACATAGAGCACGATCCAAGAAATATCAACTTCAAAAAACATAC
CTTAAGAAACCTAAGGATCCCTGATGTATCAACTTTCAGGAGAAAAAGAT
GTTAAAAAAATAAGAAGTGATATCATTTTTGAGCAAGAAGAAAGAAGAAA
AACCGAAAATTCAGGACGAAAGATTCCATGTTTTTGTATTGAAAATGGTA
AACATCCGAAGTGGAACCTTTGTCCAATTGATACGACTCCGAAACTTTAT
TTTGTCAACAATAACAGGCCAGGAAACAACAGAACGAAATCAAAGATACC
TTTACTGAAAACATCGAACGAAAAGTTGAAACTTCCTTCTTTAAGCTCAC
AAAATTCACAATGGGTTACAAGTACATGTTACAGAAGAAGTAAGATTCCG
AGAAGAATTGACAGCAAAGAGACCGGAAATGATAAAGAACAACAACATTT
GATGACCCTTCAGTTTCGTGTAGATTCCGCTAACACGGACCGAAGAAAAA
CTTTGAAGAAAGGCTACCACGAAAAAGGTTTTTACAAGGCGCCACGCCCA
CACCATTTTCGAGATGATATCCATCGACCAAAATATCGTAAAGGTCGTGA
TCCAAAAGATGTTCTCTACGAGAAGATCGCAAAAGCAAAAAATCTACCCA
TCTCCAATAAAGAGTTCGAAATTCAAAGACCTGATATCAATGATCATAAG
ACAGTTGATTTATTAGAAATAACAAGAAATGGTCCACGTCATAAATGTCT
TAACCCCGAAGAATGAAGTTAGCATCAACGAAAGATGGCGATACATCGCG
TTCGTTGGATAGACTTCCTATGGAAACGTACAAAGAAAAAGAACCGCGCT
TCGAAAGCAAATTACTTTTTCCGAAAGGGCTTCAATCAACCGAAGAGCTT
GGGAAGCCGGACTTTAAAGTGAACATAGAGCACGATCCAAGAAATATCAA
CTTCAAAAAACATACCTTAAGAAACCTAAGGATCCCTGATGTATCAACTT
TCAGGAGAAAAAGATGTTAAAAAAATAAGAAGTGATATCATTTTTGAGCA
AGAAGAAAGAAGAAAAACCGAAAATTCAGGACGAAAGATTCCATGTTTTT
GTATTGAAAATGGTAAACATCCGAAGTGGAACCTTTGTCCAATTGATACG
ACTCCGAAACTTTATTTTGTCAACAATAACAGGCCAGGAAACAACAGAAC
GAAATCAAAGATACCTTTACTGAAAACATCGAACGAAAAGTTGAAACTTC
CTTCTTTAAGCTCACAAAATTCACAATGGGTTACAAGTACATGTTACAGA
AGAAGTAAGATTCCGAGAAGAATTGACAGCAAAGAGACCGGAAATGATAA
AGAACAACAACATTTGATGACCCTTCAGTTTCGTGTAGATTCCGCTAACA
CGGACCGAAGAAAAACTTTGAAGAAAGGCTACCACGAAAAAGGTTTTTAC
AAGGCGCCACGCCCACACCATTTTCGAGATGATATCCATCGACCAAAATA
TCGTAAAGGTCGTGATCCAAAAGATGTTCTCTACGAGAAGATCGCAAAAG
CAAAAAATCTACCCATCTCCAATAAAGAGTTCGAAATTCAAAGACCTGAT
ATCAATGATCATAAGACAGTTGATTTATTAGAAATAACAAGAAATGGTCC
ACGTCATAAATGTCTTAACCCCGAAGAATGAAGTTAGCATCAACGAAAGA
TGGCGATACATCGCGTTCGTTGGATAGACTTCCTATGGAAACGTACAAAG
AAAAAGAACCGCGCTTCGAAAGCAAATTACTTTTTCCGAAAGGGCTTCAA
TCAACCGAAGAGCTTGGGAAGCCGGACTTTAAAGTGAACATAGAGCACGA
TCCAAGAAATATCAACTTCAAAAAACATACCTTAAGAAACCTAAGGATCC
CTGATGTATCAACTTTCAGGAGAAAAAGATGTTAAAAAAATAAGAAGTGA
TATCATTTTTGAGCAAGAAGAAAGAAGAAAAACCGAAAATTCAGGACGAA
AGATTCCATGTTTTTGTATTGAAAATGGTAAACATCCGAAGTGGAACCTT
TGTCCAATTGATACGACTCCGAAACTTTATTTTGTCAACAATAACAGGCC
AGGAAACAACAGAACGAAATCAAAGATACCTTTACTGAAAACATCGAACG
AAAAGTTGAAACTTCCTTCTTTAAGCTCACAAAATTCACAATGGGTTACA
AGTACATGTTACAGAAGAAGTAAGATTCCGAGAAGAATTGACAGCAAAGA
GACCGGAAATGATAAAGAACAACAACATTTGATGACCCTTCAGTTTCGTG
TAGATTCCGCTAACACGGACCGAAGAAAAACTTTGAAGAAAGGCTACCAC
GAAAAAGGTTTTTACAAGGCGCCACGCCCACACCATTTTCGAGATGATAT
CCATCGACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028177-exon-sc0000667-1575043694:98662..99265 | TCONS_00028177-exon-sc0000667-1575043694:98662..99265 | Clytia hemisphaerica | exon |
| TCONS_00028177-exon-sc0000667-1575043694:98084..98192 | TCONS_00028177-exon-sc0000667-1575043694:98084..98192 | Clytia hemisphaerica | exon |
| TCONS_00028177-exon-sc0000667-1575043694:97742..97854 | TCONS_00028177-exon-sc0000667-1575043694:97742..97854 | Clytia hemisphaerica | exon |
| TCONS_00028177-exon-sc0000667-1575043694:96509..97598 | TCONS_00028177-exon-sc0000667-1575043694:96509..97598 | Clytia hemisphaerica | exon |
| TCONS_00028177-exon-sc0000667-1510915933:98662..99265 | TCONS_00028177-exon-sc0000667-1510915933:98662..99265 | Clytia hemisphaerica | exon |
| TCONS_00028177-exon-sc0000667-1510915933:98084..98192 | TCONS_00028177-exon-sc0000667-1510915933:98084..98192 | Clytia hemisphaerica | exon |
| TCONS_00028177-exon-sc0000667-1510915933:97742..97854 | TCONS_00028177-exon-sc0000667-1510915933:97742..97854 | Clytia hemisphaerica | exon |
| TCONS_00028177-exon-sc0000667-1510915933:96509..97598 | TCONS_00028177-exon-sc0000667-1510915933:96509..97598 | Clytia hemisphaerica | exon |
| TCONS_00028177-exon-sc0000667-1491911889:98662..99265 | TCONS_00028177-exon-sc0000667-1491911889:98662..99265 | Clytia hemisphaerica | exon |
| TCONS_00028177-exon-sc0000667-1491911889:98084..98192 | TCONS_00028177-exon-sc0000667-1491911889:98084..98192 | Clytia hemisphaerica | exon |
| TCONS_00028177-exon-sc0000667-1491911889:97742..97854 | TCONS_00028177-exon-sc0000667-1491911889:97742..97854 | Clytia hemisphaerica | exon |
| TCONS_00028177-exon-sc0000667-1491911889:96509..97598 | TCONS_00028177-exon-sc0000667-1491911889:96509..97598 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000667 | supercontig | sc0000667:96509..99265 - |
Blast
The following BLAST results are available for this feature:
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