TCONS_00028186 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028186
Unique NameTCONS_00028186
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028186 ID=TCONS_00028186|Name=TCONS_00028186|organism=Clytia hemisphaerica|type=transcript|length=353bp
TAGAAATATCGTAAAGGTCGTGATCCAAAAGATGTTCTCTACGAGAAGAt
cgcaaaagcaaaaaatctacCCATCTCCAATAAAGAGTTCGAAATTCAAA
GACCTGATATCAATGATCATAAGACAGTTGATTTATTAGAAATAACAAGA
AATGGTCCACGTCATAAATGTCTTAACCCCGTAGAATGAAACTCCATCAA
TAATGAGAAAGGAAATGGGCGGACAACAACAAACTTTAAAAGACATACGT
CTGACATGTTATAATGCATCAAAGAGCTACGGAATTAAGCAAGATGTCAG
TAACCATCAATAGGCGATGATGTTTCCCAACTCAAGGTTGTCGAAAATCC
GAA
Run BLAST on NCBI

transcript from alignment at sc0000667:101288..101640

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028186 ID=TCONS_00028186|Name=TCONS_00028186|organism=Clytia hemisphaerica|type=transcript|length=353bp|location=Sequence derived from alignment at sc0000667:101288..101640 (Clytia hemisphaerica)
TTCGGATTTTCGACAACCTTGAGTTGGGAAACATCATCGCCTATTGATGG
TTACTGACATCTTGCTTAATTCCGTAGCTCTTTGATGCATTATAACATGT
CAGACGTATGTCTTTTAAAGTTTGTTGTTGTCCGCCCATTTCCTTTCTCA
TTATTGATGGAGTTTCATTCTACGGGGTTAAGACATTTATGACGTGGACC
ATTTCTTGTTATTTCTAATAAATCAACTGTCTTATGATCATTGATATCAG
GTCTTTGAATTTCGAACTCTTTATTGGAGATGGgtagattttttgctttt
gcgaTCTTCTCGTAGAGAACATCTTTTGGATCACGACCTTTACGATATTT
CTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015955XLOC_015955Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028186-exon-sc0000667-1491911889:101288..101640TCONS_00028186-exon-sc0000667-1491911889:101288..101640Clytia hemisphaericaexon
TCONS_00028186-exon-sc0000667-1510915933:101288..101640TCONS_00028186-exon-sc0000667-1510915933:101288..101640Clytia hemisphaericaexon
TCONS_00028186-exon-sc0000667-1575043694:101288..101640TCONS_00028186-exon-sc0000667-1575043694:101288..101640Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000667supercontigsc0000667:101288..101640 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.2383	0	1.51433	2.38376	31.1908	22.9962	23.4206	22.5281	8.59726	20.4536	5.19666	4.94075	0.843097	0.997122	0.761162	0.867029	0	0.25754	0	0	1.20777	0.759398	0	0.922486	2.48726	2.06185	17.4171	19.065	2.08294	3.15904
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028186 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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