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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028198 ID=TCONS_00028198|Name=TCONS_00028198|organism=Clytia hemisphaerica|type=transcript|length=851bp
AAAGTTTGACTGAAACACTCATTACTGTGCTTTGATAAAAAGAACCGTTT
TTTGAGCTAGAACAGCCAGACGTCCGATCAAGACAAACTACTTCACGTCA
AGAACATTTCTTCGTACCTaatgtaaacataaatatttgGTGTATAACAA
TCAAAGCCACGATTTACTAATTCACTTGACAACACTGAGCCAGGCCTGAA
AATTCCGAATCTCGTATCATACCAAACCGCAAAATCGACCTGAAGTTTCT
ATTCCGGTTATCAACATTCAAAGACAgttgaaaatttaaatacttTCACT
TTCCGTACCAAAACTATTTGGAAGCTAGTAATTTGGAAATTTCGTAACGA
AAGACTTCCTGACCTTCCTGCTATCCAACATCAAAACATGTGACAACGTg
atcagaaaaaccaaaacaaaacaactaTCCTGTATTACTTATTGGAAGTG
ACCACATAATAATAAACAAAGCTATATACGTACTGTACGCATCACAAGTC
AATTATCTAATTTGCAACAAGAAATTTACAGGAAGAATCACCTCATCATA
AGGATAAAGGAGACGAGGACACAATTCTTGGCACTCACTAAAATTGTTGA
TTCCGTTCAATCCAATATCGATGTACTATAGCTGATGACGCATTGGAGCT
GACATTGATCATTTTGGACCAGAAACACTTAAGGAAGGAACCGACAGATT
ACTGTAACAAAATTCGTTCGTGACATTCGATTCCAATCAAAAGATCTGAA
GTCATTACATTCCACCAAATTTTATTCTCGAATTTGATAACTTTAATTTG
ATCGTTAGATCATCAAAGAGTTGTGATCGTTGTGATGAGAAAAccaatag
a Run BLAST on NCBI transcript from alignment at sc0000670:128437..130144+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028198 ID=TCONS_00028198|Name=TCONS_00028198|organism=Clytia hemisphaerica|type=transcript|length=1708bp|location=Sequence derived from alignment at sc0000670:128437..130144+ (Clytia hemisphaerica)
AAAGTTTGACTGAAACACTCATTACTGTGCTTTGATAAAAAGAACCGTTT
TTTGAGGTAAGTTCTATTTTTAAGATTCGGTAAACTGTTTAAAAAGACTT
CGTATATACTGTTAAATACTTTAGAACAAAAATGATTCATGTCCGATCTT
TAGATAGTAAAAAATTTAGAAGAAAGTGAAACCATAAGATTTGCGCCGCG
TCAAAAAAGACGGATTGAATTCAACACTTTttcacatatttttcaaaatc
tgactatggattttactttcaatctagcgcttgtgtgaaaaccacgcatG
TCACACGTcttgaatgggaaataagttgCTTCATGTCCCACTCAAGAGCT
TCAGGTCTAGCCCCTTCGGGACTTTCAATTCAATGGTTTGGCTTCCCGAT
AAACAAGGTTCTACTGGTGTCATCGTGTTACGATTCGATAGTTTGCATTT
GTAGAATCGCAATGATTGGCTGCGCTGAGATATGTGATTTTTACTTCACC
CTGGGTAGGACCCGTACCGAGAGTTCGGAGGGCATACAGTATCGTATCTA
GTTGAGAAAAACTTTCCCGATGAATAAAtacaaatagaacgaaaataGGC
ATTTGTAAACCTTTATTGagctcttatttaaaaaattgtttcttttttga
aattccagaTTTCCAAGTGGCAATAAAGCTTGGAGCCGCGGTAGCCGGGA
AGTTTTGAGCTCATTTTGGTACTattggaaagctatttttataTATCCTG
TCTgcgcccctttaaatcaagagGTTAAGAACTATGACCAAAAGTCTTGG
ACTTTTGACCTACTTTGGACGTGTATAACGTCTTTCGGGGGTAAAAGGGT
TAAACATTTACAAGTTATCATGTGACTCtcctttttcctttttcatttac
TTTAGATTTACAGCTAGAACAGCCAGACGTCCGATCAAGACAAACTACTT
CACGTCAAGAACATTTCTTCGTACCTaatgtaaacataaatatttgGTGT
ATAACAATCAAAGCCACGATTTACTAATTCACTTGACAACACTGAGCCAG
GCCTGAAAATTCCGAATCTCGTATCATACCAAACCGCAAAATCGACCTGA
AGTTTCTATTCCGGTTATCAACATTCAAAGACAgttgaaaatttaaatac
ttTCACTTTCCGTACCAAAACTATTTGGAAGCTAGTAATTTGGAAATTTC
GTAACGAAAGACTTCCTGACCTTCCTGCTATCCAACATCAAAACATGTGA
CAACGTgatcagaaaaaccaaaacaaaacaactaTCCTGTATTACTTATT
GGAAGTGACCACATAATAATAAACAAAGCTATATACGTACTGTACGCATC
ACAAGTCAATTATCTAATTTGCAACAAGAAATTTACAGGAAGAATCACCT
CATCATAAGGATAAAGGAGACGAGGACACAATTCTTGGCACTCACTAAAA
TTGTTGATTCCGTTCAATCCAATATCGATGTACTATAGCTGATGACGCAT
TGGAGCTGACATTGATCATTTTGGACCAGAAACACTTAAGGAAGGAACCG
ACAGATTACTGTAACAAAATTCGTTCGTGACATTCGATTCCAATCAAAAG
ATCTGAAGTCATTACATTCCACCAAATTTTATTCTCGAATTTGATAACTT
TAATTTGATCGTTAGATCATCAAAGAGTTGTGATCGTTGTGATGAGAAAA
ccaataga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028198-exon-sc0000670-1491911889:128437..128492 | TCONS_00028198-exon-sc0000670-1491911889:128437..128492 | Clytia hemisphaerica | exon |
| TCONS_00028198-exon-sc0000670-1510915933:128437..128492 | TCONS_00028198-exon-sc0000670-1510915933:128437..128492 | Clytia hemisphaerica | exon |
| TCONS_00028198-exon-sc0000670-1575043694:128437..128492 | TCONS_00028198-exon-sc0000670-1575043694:128437..128492 | Clytia hemisphaerica | exon |
| TCONS_00028198-exon-sc0000670-1491911889:129350..130144 | TCONS_00028198-exon-sc0000670-1491911889:129350..130144 | Clytia hemisphaerica | exon |
| TCONS_00028198-exon-sc0000670-1510915933:129350..130144 | TCONS_00028198-exon-sc0000670-1510915933:129350..130144 | Clytia hemisphaerica | exon |
| TCONS_00028198-exon-sc0000670-1575043694:129350..130144 | TCONS_00028198-exon-sc0000670-1575043694:129350..130144 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000670 | supercontig | sc0000670:128437..130144 + |
Blast
The following BLAST results are available for this feature:
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