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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028203 ID=TCONS_00028203|Name=TCONS_00028203|organism=Clytia hemisphaerica|type=transcript|length=863bp
TGTAGGTGACAAGAATTAAAAGatgataaaaataacaaaataaattgata
TAGGATTGATATAGTTTCATTGATTAGGAAACTGTCCATTCTCCACTCAC
TATGCAGAAGATCAACACTCCCGCATCGAATAGCATTGCACCTTGTGATC
AGCAAAACGCCAAGAGTGAAGCAAGCTTGTTGAAGTTAAGGAAACATGCT
CTCGTATCCGTCAAAAGTAAAGCTTCAACAACTCCAGCAAGTAGTGGTAG
TGTAACAACTGGTGGCTCCTCAAGTGCACACAAATCGTACTCCTCCAGTA
TACGAAAAAGTAGTAGTGAACGTTCGCAACCCGTACCTAAGAAAACAAAA
CGCAAATTatcgaaatcgaaaatgaaaacacGTCAGCGGCACACGGGAAA
CGGTGACAAAGAAAGTGATATGATTTCCAAACTTGTTCTTAATGCTCCAC
CCAATCGATTGCCAGATCAGACGCCTGTAAAAGATTCTTACGCCTCGAAG
ACGCCCTTAGATTTCGAAGATTCGGGTCTTCGCTGGGATAGCCCGTGTGA
TAATATGCTTGATGAGATAAGACGCATTGAGGCTTATAAAACAAACCGTC
GATTACGTTATATGAATGCGAATAACATGAAAATAGCAGAACTTACAATT
CAAGAGAAAaaactttgatgattttctcTCGATATTTTATCATAACTAAT
AATTTTATAGTTTTTATCTATTGTTAATAGGGTATACTTTTGATATGTGT
AAAGATGTTTATAGTTTCAGAATATTTATACTTCTGAGGTTAAAAATTTG
GTTTGAACGCCAGGTgatatttcaaataaattttgagatcaAGATCAAGA
TTTTCTGCGATCG Run BLAST on NCBI protein sequence of TCONS_00028203-protein >TCONS_00028203-protein ID=TCONS_00028203-protein|Name=TCONS_00028203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MQKINTPASNSIAPCDQQNAKSEASLLKLRKHALVSVKSKASTTPASSGS
VTTGGSSSAHKSYSSSIRKSSSERSQPVPKKTKRKLSKSKMKTRQRHTGN
GDKESDMISKLVLNAPPNRLPDQTPVKDSYASKTPLDFEDSGLRWDSPCD
NMLDEIRRIEAYKTNRRLRYMNANNMKIAELTIQEKKL Run BLAST on NCBI transcript from alignment at sc0000670:67800..69601- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028203 ID=TCONS_00028203|Name=TCONS_00028203|organism=Clytia hemisphaerica|type=transcript|length=1802bp|location=Sequence derived from alignment at sc0000670:67800..69601- (Clytia hemisphaerica)
TGTAGGTGACAAGAATTAAAAGATGATAAAAATAACAAAATAAATTGATA
TAGGATTGATATAGTTTCATTGATTAGGAAACTGTCCATTCTCCACTCAC
TATGCAGAAGATCAACACTCCCGCATCGAATAGCATTGCACCTTGTGATC
AGCAAAACGCCAAGAGTGAAGCAAGCTTGTTGAAGTTAAGGAAACATGCT
CTCGTATCCGTCAAAAGTAAAGGTTTGATGGTTTTTATTCATGAATGACG
AATGTGGCCACAAAACAAACATCGCATTGAGAGAATGATTTAGTACCCAT
CAATAGTAATATTTCCAGTGCTGGCACAAAACGATAAAAAAGCGTTCGAG
ACACCCCCTTCTCACAGACTCGATATGAGTTTTACAGCCAATAGCAGGCA
CGACGCAACGGGTACGGCAGGGGGGGGGGGGGGCCCCCCCCCCCCCCGCC
CCGATATGAGTTTTACAGCCAATAGCAGGCACGACGCAACGGGTGCGGCA
GGTACAGCGGCCGCCGTACCAGATTTTCACAAAAATACCTGAAGTTTCCT
CTTCGTCGGTCAAATCGCTATAAAATCGCTTAAATTTCCTCATTCGCCGT
ACCAGATATAAAAAGCTTCCGTCGTGCCTGGCCAATAGGGGTAAAAATAA
CGGAATAAAACTCGATGGAGTGAGGATTTGTTCATTTTATTTCCCTCACA
TTGGACGGAAGATATCTTCCGGGTCAGTGAAACTCGCAAACTCGTTAGAA
ATCTATGATAATTTTAGGTTTTTCTAATAATGTAGGAGTTGACATTAAAT
GCGAAGTATATCTAGAAAGGGCATTTAATGTAATCCAATGTAAATAACGT
CTCCCTCAGCTTATTAATTTTCGAAAAGTTTACTGACACTCCCCCCCCCA
CCGTTTATTTTTTTTGAAAATATTTTCAGCTATCAACATCCTAAATTGCT
CTATAATCACCTTACAGTACACGAAAAAGTAATGATGTATATTTTATTCG
GACAATAAACTTAAAATAGGTGAAACTAATGAATTCAAATAAAAATTCTT
GAGATTATCATGTGGCTCTTACTCAAAGGTTAGAGTAAGTCCACTCAAGA
ATTTTTATTGAAATTCATTAGTTTCACCCATTTTAAGTTAATTTTTTTTT
GCCTTTTACAGCTTCAACAACTCCAGCAAGTAGTGGTAGTGTAACAACTG
GTGGCTCCTCAAGTGCACACAAATCGTACTCCTCCAGTATACGAAAAAGT
AGTAGTGAACGTTCGCAACCCGTACCTAAGAAAACAAAACGCAAATTATC
GAAATCGAAAATGAAAACACGTCAGCGGCACACGGGAAACGGTGACAAAG
AAAGTGATATGATTTCCAAACTTGTTCTTAATGCTCCACCCAATCGATTG
CCAGATCAGACGCCTGTAAAAGATTCTTACGCCTCGAAGACGCCCTTAGA
TTTCGAAGATTCGGGTCTTCGCTGGGATAGCCCGTGTGATAATATGCTTG
ATGAGATAAGACGCATTGAGGCTTATAAAACAAACCGTCGATTACGTTAT
ATGAATGCGAATAACATGAAAATAGCAGAACTTACAATTCAAGAGAAAAA
ACTTTGATGATTTTCTCTCGATATTTTATCATAACTAATAATTTTATAGT
TTTTATCTATTGTTAATAGGGTATACTTTTGATATGTGTAAAGATGTTTA
TAGTTTCAGAATATTTATACTTCTGAGGTTAAAAATTTGGTTTGAACGCC
AGGTGATATTTCAAATAAATTTTGAGATCAAGATCAAGATTTTCTGCGAT
CG Coding sequence (CDS) from alignment at sc0000670:67800..69601- >TCONS_00028203 ID=TCONS_00028203|Name=TCONS_00028203|organism=Clytia hemisphaerica|type=CDS|length=1134bp|location=Sequence derived from alignment at sc0000670:67800..69601- (Clytia hemisphaerica)
CTTCAACAACTCCAGCAAGTAGTGGTAGTGTAACAACTGGTGGCTCCTCA
AGTGCACACAAATCGTACTCCTCCAGTATACGAAAAAGTAGTAGTGAACG
TTCGCAACCCGTACCTAAGAAAACAAAACGCAAATTATCGAAATCGAAAA
TGAAAACACGTCAGCGGCACACGGGAAACGGTGACAAAGAAAGTGATATG
ATTTCCAAACTTGTTCTTAATGCTCCACCCAATCGATTGCCAGATCAGAC
GCCTGTAAAAGATTCTTACGCCTCGAAGACGCCCTTAGATTTCGAAGATT
CGGGTCTTCGCTGGGATAGCCCGTGTGATAATATGCTTGATGAGATAAGA
CGCATTGAGGCTTATAAAACAAACCGTCGATTACGTTATATGAATGCGAA
TAACATGAAAATAGCAGAACTTACAATTCAAGAGAAAAAACTTTGAATGC
AGAAGATCAACACTCCCGCATCGAATAGCATTGCACCTTGTGATCAGCAA
AACGCCAAGAGTGAAGCAAGCTTGTTGAAGTTAAGGAAACATGCTCTCGT
ATCCGTCAAAAGTAAAGCTTCAACAACTCCAGCAAGTAGTGGTAGTGTAA
CAACTGGTGGCTCCTCAAGTGCACACAAATCGTACTCCTCCAGTATACGA
AAAAGTAGTAGTGAACGTTCGCAACCCGTACCTAAGAAAACAAAACGCAA
ATTATCGAAATCGAAAATGAAAACACGTCAGCGGCACACGGGAAACGGTG
ACAAAGAAAGTGATATGATTTCCAAACTTGTTCTTAATGCTCCACCCAAT
CGATTGCCAGATCAGACGCCTGTAAAAGATTCTTACGCCTCGAAGACGCC
CTTAGATTTCGAAGATTCGGGTCTTCGCTGGGATAGCCCGTGTGATAATA
TGCTTGATGAGATAAGACGCATTGAGGCTTATAAAACAAACCGTCGATTA
CGTTATATGAATGCGAATAACATGAAAATAGCAGAACTTACAATTCAAGA
GAAAAAACTTTGAATGCAGAAGATCAACACTCCCGCATCGAATAGCATTG
CACCTTGTGATCAGCAAAACGCCAAGAGTGAAGCAAGCTTGTTGAAGTTA
AGGAAACATGCTCTCGTATCCGTCAAAAGTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028203-exon-sc0000670-1575043694:69380..69601 | TCONS_00028203-exon-sc0000670-1575043694:69380..69601 | Clytia hemisphaerica | exon |
| TCONS_00028203-exon-sc0000670-1575043694:67800..68440 | TCONS_00028203-exon-sc0000670-1575043694:67800..68440 | Clytia hemisphaerica | exon |
| TCONS_00028203-exon-sc0000670-1510915933:69380..69601 | TCONS_00028203-exon-sc0000670-1510915933:69380..69601 | Clytia hemisphaerica | exon |
| TCONS_00028203-exon-sc0000670-1510915933:67800..68440 | TCONS_00028203-exon-sc0000670-1510915933:67800..68440 | Clytia hemisphaerica | exon |
| TCONS_00028203-exon-sc0000670-1491911889:69380..69601 | TCONS_00028203-exon-sc0000670-1491911889:69380..69601 | Clytia hemisphaerica | exon |
| TCONS_00028203-exon-sc0000670-1491911889:67800..68440 | TCONS_00028203-exon-sc0000670-1491911889:67800..68440 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000670 | supercontig | sc0000670:67800..69601 - |
Blast
The following BLAST results are available for this feature:
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