TCONS_00028205 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028205
Unique NameTCONS_00028205
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length775

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028205 ID=TCONS_00028205|Name=TCONS_00028205|organism=Clytia hemisphaerica|type=transcript|length=775bp
ATTGTTAAAGACTTGTTGAATGAACCTACAGAGTCTCCACAACCTCCAGA
TTTGCAAGAATCTGCGCCAATACCTCCATCAGGTCAACTTTTGTCACCTT
CACTTAGCCCTGTTATTGAATGGCAAGAAACACTCGTGCATAAGAGAAGT
ACTCAGACCAATTTGAGAACACAAATTaaaaagaatcGATCGGCACAATC
GCAAACAGATCATGTTCAACCGCCCATCCAGACCAGTGATGTTGGAACTC
AAACACGCGAAGAAAACGTTACATCAGAGGAACTAAATACCATATTCAAC
ACAACAGCACTTGAAACGATGGCTGATTTGCTAGGTTTACCTTCCTTGCC
ATCAATCGTTCGAAAGTTTTATCGGACACACGAAAAGGATGATCAAAACG
CGGACCAGAACGAAGAAAAATTTGGGAGCTTCCATCAGTGAAGAGGACTT
TTGGTTGAAGAAGAGAGAAAAGGTTGACCTTAACTTTGATCCAAGTCAAG
AGGAGGTTAACGATTCTAAAGATGACGAAGAACCACTCGCCTTTCGTGCC
ACCAGGAGACCATTCAACTTCACAAAAGACAAAGTTTTGCTCGTCTTCGA
AAGTTAATTGAAAAAACTCTTGAAAACTTGTCTCAAATGTGGCGGAGCAA
CCTGTGATCAAACATCATGTCTCAGAGCAAGTGGGCACACAATATTCGGT
TAAAATGGAGTCTCTAAATGGATGTTTAACCGCCTGGGCTTCACAATCCA
AGGCATTGTCTACACTGGAAACGAC
Run BLAST on NCBI

transcript from alignment at sc0000670:83752..85352-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028205 ID=TCONS_00028205|Name=TCONS_00028205|organism=Clytia hemisphaerica|type=transcript|length=1601bp|location=Sequence derived from alignment at sc0000670:83752..85352- (Clytia hemisphaerica)
ATTGTTAAAGACTTGTTGAATGAACCTACAGAGTCTCCACAACCTCCAGA
TTTGCAAGAATCTGCGCCAATACCTCCATCAGGTCAACTTTTGTCACCTT
CACTTAGCCCTGTTATTGAATGGCAAGAAACACTCGTGCATAAGAGAAGT
ACTCAGACCAATTTGAGAACACAAATTGTGAGTAGATTTTGCCAATAAAG
ATGCATTATAAGGAAATAGACATATCAGAAGTTGATTAATATGATATATT
GCTTGATCCTTTTTTCCTTATTTTAGAAAAAGAATCGATCGGCACAATCG
CAAACAGATCATGTTCAACCGCCCATCCAGACCAGTGATGTTGGAACTCA
AACACGCGAAGAAAACGTTACATCAGAGGAACTAAATACCATATTCAACA
CAACAGCACTTGAAACGATGGCTGATTTGCTAGGTTTACCTTCCTTGCCA
TCAATCGTTCGGTGAGTTGAATCAAATCTTTTGTTGAATAGAGAACGAAA
TCTAAATTTGTGCCTCGGTGAGATTTGGCAGTTTGAATGGATGATTGAAA
AATAAGAAATTTACAAAGGAGCTAGATTTTTAAGTGTTAATACCGGGTGT
AGAAATAACATTAATCAATAGCATTTAAATCTGAGACAAGTTCCAGAGTG
GATCCCAAAACTATTTACCACCACTTCTTCATAGAAAGTTTTATCGGACA
CACGAAAAGGATGATCAAAACGCGGACCAGAACGAAGAAAAATTTGGGAG
CTTCCATCAGGTAATACTTGCATCGTTCAATACACGCTTTTTTTATAAGA
ATAGTGTACTTTGGCTGAGGATGAGCATTGTTCTTATTTTTCTATTGTTC
TAAACAATAATAGTCCTATTGTTCTAATTCTAAAATCTCGCTCTGATATT
TTTAATAGAAGTTTTTCTTATAAAAAAAGGCTGTATCTTTTTTCAGATAG
CAGATAGTTTTGACTAATTTTGACACTTCTGGATGCTACAAATTGTTCTT
CAGATGGCTTTTTTAAAGTCAAATCAAATGTAATACATGGTAAATAAATC
TTTCTTTTTCATCAGATAGTAAGTAACAGTCACACCAACGAAAAGAGTTG
CAATAAATCTTTCTTTTTCATCAGATACTGTAGTAAGTAACAGTGACACC
AACGAAAAAAGTTGCAAGTACAACGAATAATCCATCTTTAATAGTCTGTG
TGCGTTTTAAGTTAAGAATAGGTAAGAAGCTTTGTACTGATGAATTGAAC
TCTTTCTATTCTAGTGAAGAGGACTTTTGGTTGAAGAAGAGAGAAAAGGT
TGACCTTAACTTTGATCCAAGTCAAGAGGAGGTTAACGATTCTAAAGATG
ACGAAGAACCACTCGCCTTTCGTGCCACCAGGAGACCATTCAACTTCACA
AAAGACAAAGTTTTGCTCGTCTTCGAAAGTTAATTGAAAAAACTCTTGAA
AACTTGTCTCAAATGTGGCGGAGCAACCTGTGATCAAACATCATGTCTCA
GAGCAAGTGGGCACACAATATTCGGTTAAAATGGAGTCTCTAAATGGATG
TTTAACCGCCTGGGCTTCACAATCCAAGGCATTGTCTACACTGGAAACGA
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015967XLOC_015967Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028205-exon-sc0000670-1575043694:85176..85352TCONS_00028205-exon-sc0000670-1575043694:85176..85352Clytia hemisphaericaexon
TCONS_00028205-exon-sc0000670-1575043694:84892..85076TCONS_00028205-exon-sc0000670-1575043694:84892..85076Clytia hemisphaericaexon
TCONS_00028205-exon-sc0000670-1575043694:84593..84668TCONS_00028205-exon-sc0000670-1575043694:84593..84668Clytia hemisphaericaexon
TCONS_00028205-exon-sc0000670-1575043694:83752..84088TCONS_00028205-exon-sc0000670-1575043694:83752..84088Clytia hemisphaericaexon
TCONS_00028205-exon-sc0000670-1510915933:85176..85352TCONS_00028205-exon-sc0000670-1510915933:85176..85352Clytia hemisphaericaexon
TCONS_00028205-exon-sc0000670-1510915933:84892..85076TCONS_00028205-exon-sc0000670-1510915933:84892..85076Clytia hemisphaericaexon
TCONS_00028205-exon-sc0000670-1510915933:84593..84668TCONS_00028205-exon-sc0000670-1510915933:84593..84668Clytia hemisphaericaexon
TCONS_00028205-exon-sc0000670-1510915933:83752..84088TCONS_00028205-exon-sc0000670-1510915933:83752..84088Clytia hemisphaericaexon
TCONS_00028205-exon-sc0000670-1491911889:85176..85352TCONS_00028205-exon-sc0000670-1491911889:85176..85352Clytia hemisphaericaexon
TCONS_00028205-exon-sc0000670-1491911889:84892..85076TCONS_00028205-exon-sc0000670-1491911889:84892..85076Clytia hemisphaericaexon
TCONS_00028205-exon-sc0000670-1491911889:84593..84668TCONS_00028205-exon-sc0000670-1491911889:84593..84668Clytia hemisphaericaexon
TCONS_00028205-exon-sc0000670-1491911889:83752..84088TCONS_00028205-exon-sc0000670-1491911889:83752..84088Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:83752..85352 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.222791	4.69389e-06	0	6.13912e-06	0.103824	6.32093e-06	0	1.19668	1.39729	0.000109916	1.24296	0.00051065	0.00473929	0.218131	0.382142	0.399775	7.79132e-06	3.06037e-06	0.78514	0.308398	0.174309	0	0.588057	0.221894	0.000372307	1.02975e-06	4.14353e-06	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028205 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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