TCONS_00028206 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028206
Unique NameTCONS_00028206
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length921

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028206 ID=TCONS_00028206|Name=TCONS_00028206|organism=Clytia hemisphaerica|type=transcript|length=921bp
GTATgagaaatcaaaagaaaaactatgaTGTTACTTTCTTTGGTCTGCCC
AAAGATAATACTTTAGCAAAAGAATGGGTCAATcgtttgaaaacaaaaag
agaaGACCCTCTCCCGAAGAAGGTTATTTTATGTGAAAGTCATTTTAGTG
CAGAAATGTTTGACAAGTCAGTGGATCTTCAAAGAAGATTCATGAAAGAA
AGAGGCATGAAGTTAAAGCAACGAAAACTAATTACCACTGCCGTACCAGA
CATTTTCCCATTCTCGTCTTCGAAACAAGCGGTAAAGAGACCAAATATTA
TGACAAAGATCAGGGAACGACAAaaaaagaatcGATCGGCACAATCGCAA
ACAGATCATGTTCAACCGCCCATCCAGACCAGTGATGTTGGAACTCAAAC
ACGCGAAGAAAACGTTACATCAGAGGAACTAAATACCATATTCAACACAA
CAGCACTTGAAACGATGGCTGATTTGCTAGGTTTACCTTCCTTGCCATCA
ATCGTTCGAAAGTTTTATCGGACACACGAAAAGGATGATCAAAACGCGGA
CCAGAACGAAGAAAAATTTGGGAGCTTCCATCAGTGAAGAGGACTTTTGG
TTGAAGAAGAGAGAAAAGGTTGACCTTAACTTTGATCCAAGTCAAGAGGA
GGTTAACGATTCTAAAGATGACGAAGAACCACTCGCCTTTCGTGCCACCA
GGAGACCATTCAACTTCACAAAAGACAAAGTTTTGCTCGTCTTCGAAAGT
TAATTGAAAAAACTCTTGAAAACTTGTCTCAAATGTGGCGGAGCAACCTG
TGATCAAACATCATGTCTCAGAGCAAGTGGGCACACAATATTCGGTTAAA
ATGGAGTCTCTAAATGGATGTTTAACCGCCTGGGCTTCACAATCCAAGGC
ATTGTCTACACTGGAAACGAC
Run BLAST on NCBI

transcript from alignment at sc0000670:83752..86133-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028206 ID=TCONS_00028206|Name=TCONS_00028206|organism=Clytia hemisphaerica|type=transcript|length=2382bp|location=Sequence derived from alignment at sc0000670:83752..86133- (Clytia hemisphaerica)
GTATGAGAAATCAAAAGAAAAACTATGATGTTACTTTCTTTGGTCTGCCC
AAAGATAATACTTTAGCAAAAGAATGGGTCAATCGTTTGAAAACAAAAAG
AGAAGACCCTCTCCCGAAGAAGGTTATTTTATGTGAAAGTCATTTTAGTG
CAGAAATGTTTGACAAGTCAGTGGATCTTCAAAGAAGATTCATGAAAGGT
ACGTATACATACCTTACCCTTGCTGAAAAGCTTACTTCTTCATCTGTATC
ATTATCAGCCTTTAATCTACACACTAGAACTACGTATGTTTCAACTGGGA
AATTACCCAAATAATCATGGCCGGTGAAAATAGCTAAGCTCAACTTAAAA
GCATATGCAAGTGTTTCTTCCTAAGAAAATAATATCTGTCAATCATTTTA
GAAAGAGGCATGAAGTTAAAGCAACGAAAACTAATTACCACTGCCGTACC
AGACATTTTCCCATTCTCGTCTTCGAAACAAGCGGTAAAGAGACCAAATA
TTATGACAAAGATCAGGGAACGACAAGTAAGTAGATTATACATATTTCCC
AAAAATCAACATTAGAATATCGTTTGATAATTTCGAGGAAACAACGTTAC
TCTAAGATCTTGTATAATAACTGCAGTGGGTCTAAATAAAAGTGGGGTTT
TCCCAGCCGGCACACAAAGTTATGTCAATGTTCATTTAACGTACACAACC
TCCATATAACGTTAGATGGACGCTAAAACAACGTTGTGTGCCAACTGGGT
TCAGGACTAAAGTAGATCATTTTTAATTTACATTGTTAAAGACTTGTTGA
ATGAACCTACAGAGTCTCCACAACCTCCAGATTTGCAAGAATCTGCGCCA
ATACCTCCATCAGGTCAACTTTTGTCACCTTCACTTAGCCCTGTTATTGA
ATGGCAAGAAACACTCGTGCATAAGAGAAGTACTCAGACCAATTTGAGAA
CACAAATTGTGAGTAGATTTTGCCAATAAAGATGCATTATAAGGAAATAG
ACATATCAGAAGTTGATTAATATGATATATTGCTTGATCCTTTTTTCCTT
ATTTTAGAAAAAGAATCGATCGGCACAATCGCAAACAGATCATGTTCAAC
CGCCCATCCAGACCAGTGATGTTGGAACTCAAACACGCGAAGAAAACGTT
ACATCAGAGGAACTAAATACCATATTCAACACAACAGCACTTGAAACGAT
GGCTGATTTGCTAGGTTTACCTTCCTTGCCATCAATCGTTCGGTGAGTTG
AATCAAATCTTTTGTTGAATAGAGAACGAAATCTAAATTTGTGCCTCGGT
GAGATTTGGCAGTTTGAATGGATGATTGAAAAATAAGAAATTTACAAAGG
AGCTAGATTTTTAAGTGTTAATACCGGGTGTAGAAATAACATTAATCAAT
AGCATTTAAATCTGAGACAAGTTCCAGAGTGGATCCCAAAACTATTTACC
ACCACTTCTTCATAGAAAGTTTTATCGGACACACGAAAAGGATGATCAAA
ACGCGGACCAGAACGAAGAAAAATTTGGGAGCTTCCATCAGGTAATACTT
GCATCGTTCAATACACGCTTTTTTTATAAGAATAGTGTACTTTGGCTGAG
GATGAGCATTGTTCTTATTTTTCTATTGTTCTAAACAATAATAGTCCTAT
TGTTCTAATTCTAAAATCTCGCTCTGATATTTTTAATAGAAGTTTTTCTT
ATAAAAAAAGGCTGTATCTTTTTTCAGATAGCAGATAGTTTTGACTAATT
TTGACACTTCTGGATGCTACAAATTGTTCTTCAGATGGCTTTTTTAAAGT
CAAATCAAATGTAATACATGGTAAATAAATCTTTCTTTTTCATCAGATAG
TAAGTAACAGTCACACCAACGAAAAGAGTTGCAATAAATCTTTCTTTTTC
ATCAGATACTGTAGTAAGTAACAGTGACACCAACGAAAAAAGTTGCAAGT
ACAACGAATAATCCATCTTTAATAGTCTGTGTGCGTTTTAAGTTAAGAAT
AGGTAAGAAGCTTTGTACTGATGAATTGAACTCTTTCTATTCTAGTGAAG
AGGACTTTTGGTTGAAGAAGAGAGAAAAGGTTGACCTTAACTTTGATCCA
AGTCAAGAGGAGGTTAACGATTCTAAAGATGACGAAGAACCACTCGCCTT
TCGTGCCACCAGGAGACCATTCAACTTCACAAAAGACAAAGTTTTGCTCG
TCTTCGAAAGTTAATTGAAAAAACTCTTGAAAACTTGTCTCAAATGTGGC
GGAGCAACCTGTGATCAAACATCATGTCTCAGAGCAAGTGGGCACACAAT
ATTCGGTTAAAATGGAGTCTCTAAATGGATGTTTAACCGCCTGGGCTTCA
CAATCCAAGGCATTGTCTACACTGGAAACGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015967XLOC_015967Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028206-exon-sc0000670-1575043694:85936..86133TCONS_00028206-exon-sc0000670-1575043694:85936..86133Clytia hemisphaericaexon
TCONS_00028206-exon-sc0000670-1575043694:85608..85732TCONS_00028206-exon-sc0000670-1575043694:85608..85732Clytia hemisphaericaexon
TCONS_00028206-exon-sc0000670-1575043694:84892..85076TCONS_00028206-exon-sc0000670-1575043694:84892..85076Clytia hemisphaericaexon
TCONS_00028206-exon-sc0000670-1575043694:84593..84668TCONS_00028206-exon-sc0000670-1575043694:84593..84668Clytia hemisphaericaexon
TCONS_00028206-exon-sc0000670-1575043694:83752..84088TCONS_00028206-exon-sc0000670-1575043694:83752..84088Clytia hemisphaericaexon
TCONS_00028206-exon-sc0000670-1510915933:85936..86133TCONS_00028206-exon-sc0000670-1510915933:85936..86133Clytia hemisphaericaexon
TCONS_00028206-exon-sc0000670-1510915933:85608..85732TCONS_00028206-exon-sc0000670-1510915933:85608..85732Clytia hemisphaericaexon
TCONS_00028206-exon-sc0000670-1510915933:84892..85076TCONS_00028206-exon-sc0000670-1510915933:84892..85076Clytia hemisphaericaexon
TCONS_00028206-exon-sc0000670-1510915933:84593..84668TCONS_00028206-exon-sc0000670-1510915933:84593..84668Clytia hemisphaericaexon
TCONS_00028206-exon-sc0000670-1510915933:83752..84088TCONS_00028206-exon-sc0000670-1510915933:83752..84088Clytia hemisphaericaexon
TCONS_00028206-exon-sc0000670-1491911889:85936..86133TCONS_00028206-exon-sc0000670-1491911889:85936..86133Clytia hemisphaericaexon
TCONS_00028206-exon-sc0000670-1491911889:85608..85732TCONS_00028206-exon-sc0000670-1491911889:85608..85732Clytia hemisphaericaexon
TCONS_00028206-exon-sc0000670-1491911889:84892..85076TCONS_00028206-exon-sc0000670-1491911889:84892..85076Clytia hemisphaericaexon
TCONS_00028206-exon-sc0000670-1491911889:84593..84668TCONS_00028206-exon-sc0000670-1491911889:84593..84668Clytia hemisphaericaexon
TCONS_00028206-exon-sc0000670-1491911889:83752..84088TCONS_00028206-exon-sc0000670-1491911889:83752..84088Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:83752..86133 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.236962	0.271412	0	0.161628	0.147384	0.308184	2.0991	6.77194e-07	0.528695	1.57849	1.19049	1.26957	0.647458	0.845187	0.407926	0.573524	0.737775	0.38223	1.05042	0.147441	0.159204	0	0	1.04358	1.60502	0.164347	0.175392	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028206 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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