TCONS_00028207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028207
Unique NameTCONS_00028207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length474

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028207 ID=TCONS_00028207|Name=TCONS_00028207|organism=Clytia hemisphaerica|type=transcript|length=474bp
ATTGTTAAAGACTTGTTGAATGAACCTACAGAGTCTCCACAACCTCCAGA
TTTGCAAGAATCTGCGCCAATACCTCCATCAGGTCAACTTTTGTCACCTT
CACTTAGCCCTGTTATTGAATGGCAAGAAACACTCGTGCATAAGAGAAGT
ACTCAGACCAATTTGAGAACACAAATTaaaaagaatcGATCGGCACAATC
GCAAACAGATCATGTTCAACCGCCCATCCAGACCAGTGATGTTGGAACTC
AAACACGCGAAGAAAACGTTACATCAGAGGAACTAAATACCATATTCAAC
ACAACAGCACTTGAAACGATGGCTGATTTGCTAGGTTTACCTTCCTTGCC
ATCAATCGTTCGAAAGTTTTATCGGACACACGAAAAGGATGATCAAAACG
CGGACCAGAACGAAGAAAAATTTGGGAGCTTCCATCAGATAGCAGATagt
tttgactaattttgacACTTCTGG
Run BLAST on NCBI

transcript from alignment at sc0000670:84371..85352-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028207 ID=TCONS_00028207|Name=TCONS_00028207|organism=Clytia hemisphaerica|type=transcript|length=982bp|location=Sequence derived from alignment at sc0000670:84371..85352- (Clytia hemisphaerica)
ATTGTTAAAGACTTGTTGAATGAACCTACAGAGTCTCCACAACCTCCAGA
TTTGCAAGAATCTGCGCCAATACCTCCATCAGGTCAACTTTTGTCACCTT
CACTTAGCCCTGTTATTGAATGGCAAGAAACACTCGTGCATAAGAGAAGT
ACTCAGACCAATTTGAGAACACAAATTGTGAGTAGATTTTGCCAATAAAG
ATGCATTATAAGGAAATAGACATATCAGAAGTTGATTAATATGATATATT
GCTTGATCCTTTTTTCCTTATTTTAGAAAAAGAATCGATCGGCACAATCG
CAAACAGATCATGTTCAACCGCCCATCCAGACCAGTGATGTTGGAACTCA
AACACGCGAAGAAAACGTTACATCAGAGGAACTAAATACCATATTCAACA
CAACAGCACTTGAAACGATGGCTGATTTGCTAGGTTTACCTTCCTTGCCA
TCAATCGTTCGGTGAGTTGAATCAAATCTTTTGTTGAATAGAGAACGAAA
TCTAAATTTGTGCCTCGGTGAGATTTGGCAGTTTGAATGGATGATTGAAA
AATAAGAAATTTACAAAGGAGCTAGATTTTTAAGTGTTAATACCGGGTGT
AGAAATAACATTAATCAATAGCATTTAAATCTGAGACAAGTTCCAGAGTG
GATCCCAAAACTATTTACCACCACTTCTTCATAGAAAGTTTTATCGGACA
CACGAAAAGGATGATCAAAACGCGGACCAGAACGAAGAAAAATTTGGGAG
CTTCCATCAGGTAATACTTGCATCGTTCAATACACGCTTTTTTTATAAGA
ATAGTGTACTTTGGCTGAGGATGAGCATTGTTCTTATTTTTCTATTGTTC
TAAACAATAATAGTCCTATTGTTCTAATTCTAAAATCTCGCTCTGATATT
TTTAATAGAAGTTTTTCTTATAAAAAAAGGCTGTATCTTTTTTCAGATAG
CAGATAGTTTTGACTAATTTTGACACTTCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015967XLOC_015967Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028207-exon-sc0000670-1575043694:85176..85352TCONS_00028207-exon-sc0000670-1575043694:85176..85352Clytia hemisphaericaexon
TCONS_00028207-exon-sc0000670-1575043694:84892..85076TCONS_00028207-exon-sc0000670-1575043694:84892..85076Clytia hemisphaericaexon
TCONS_00028207-exon-sc0000670-1575043694:84593..84668TCONS_00028207-exon-sc0000670-1575043694:84593..84668Clytia hemisphaericaexon
TCONS_00028207-exon-sc0000670-1575043694:84371..84406TCONS_00028207-exon-sc0000670-1575043694:84371..84406Clytia hemisphaericaexon
TCONS_00028207-exon-sc0000670-1510915933:85176..85352TCONS_00028207-exon-sc0000670-1510915933:85176..85352Clytia hemisphaericaexon
TCONS_00028207-exon-sc0000670-1510915933:84892..85076TCONS_00028207-exon-sc0000670-1510915933:84892..85076Clytia hemisphaericaexon
TCONS_00028207-exon-sc0000670-1510915933:84593..84668TCONS_00028207-exon-sc0000670-1510915933:84593..84668Clytia hemisphaericaexon
TCONS_00028207-exon-sc0000670-1510915933:84371..84406TCONS_00028207-exon-sc0000670-1510915933:84371..84406Clytia hemisphaericaexon
TCONS_00028207-exon-sc0000670-1491911889:85176..85352TCONS_00028207-exon-sc0000670-1491911889:85176..85352Clytia hemisphaericaexon
TCONS_00028207-exon-sc0000670-1491911889:84892..85076TCONS_00028207-exon-sc0000670-1491911889:84892..85076Clytia hemisphaericaexon
TCONS_00028207-exon-sc0000670-1491911889:84593..84668TCONS_00028207-exon-sc0000670-1491911889:84593..84668Clytia hemisphaericaexon
TCONS_00028207-exon-sc0000670-1491911889:84371..84406TCONS_00028207-exon-sc0000670-1491911889:84371..84406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:84371..85352 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.272961	0.193009	0.755147	0.356928	0.405317	0.23826	1.81325	0	0	0	3.25033	0.655473	1.12396	1.8565	2.71577e-09	0.372076	0.21825	0.92279	0.428348	0.564174	1.2751	0.715237	0.153502	0	0.746869	0.66917	0.571709	0.793191	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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