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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028209 ID=TCONS_00028209|Name=TCONS_00028209|organism=Clytia hemisphaerica|type=transcript|length=1816bp
CGGGGATAAAACGTCCGGGGTACATCCTACGAACGAAGAAAAGGCTGAAC
AACTCCAACGTCAAGAACAAGCACGCGATGAAGCTGACAAATGGTTAAAG
TTGAGTAACGCCAGAAGAGAAGCTGCTAGAAACCATCTTCTAACAGGTGA
AGGGCCGACACTGCAATCTCCGAATGTACAAAGTATTTCTTCTCGTGAGG
ACGATGATTCTAGAAATGTTCAATCAACAGAAGCTTCTTATCTGCAGAGA
TTAAGTGGAGCAAGAAAGAAAACAACCTCTCCTACCCAAGATGGTGAGCG
AACACCTTCTGAGTCTTCCCATAAAGTTTATTCGACCGCCTCACAAGAAT
CACAGCATACCGACTACCGAATTCCTGGTGCACAACCATCCTCACCTGCT
CCTCAACTTCCATCATTTACTGGCTCTGAGCAACCTTTGAGCAATCATGA
ACCATCCTCGACTGTCTCTGCACCATCCTTAACTATTTCTGCATCATCCT
CTACTGTTTCTGCGCCATTCTCCATTACCTCATCACAAACTAATCCAAGA
CCACCTTCATAtgaaattataacttcatcccCAAGAAGTGACACACCTAT
CAAAAGTATTCCTTCACCTTCAAGCCAGGTGATCTCAACTGCAGAAAGTT
CTATCGCAGGAATGTCATCAGTTGCATCGACTAATAATTCGAGCCAATct
aaaaatcgtcaaaaaagaaaatcgaaGAAGACTTCAAAGACTGACTGGAA
CGATGTGCCGCCAGGTTACGATCAACTTCTGCATCCACCCAACTATTGGG
AAGCGCTGGAATTCCAAGGACAATTTGAAGAAGGTGAATCTAACAGtgaa
caagaagaagaagaagccaGTGCTTGTGTTAAACCTGATGAAAACTGGGA
TGTTTGGAGATTGACTGATAATAGATTGGATTCTGACAATGAAAATTAGA
GACACTTGGCGACGAtttcaaacattgaattttgaatgtaCTTGGATTAT
TAATTGAAGGAAATACCGTGCTATTTGTTTAATGAAAACTGGGATGTTTT
TGGAGATTAGGAGCACTTTTATAACGATtttataatattgaatttggAGT
TTGAACATTTTGTATGTACCTTATCGTTCATTTCATGTTGACGGAAAGGT
AGCAACAAAGACCAGGGAAAaccggtccaacatttcatccaacatgccaC
TTTGATGAAATGTTAGACCGGTTTGTGCAAatgtaacattttcaaaataa
agaaaaattcatagaagaagaagaaaacgtTCGTGACGTTTGTTCGGCAT
CAAACATTTGATAACAAAATTTGTTGCTTATCAGACTAGATTTTCATTCA
ACGTTTTTAGTTttcagtttcttttttttcaaatgttggtTGAAATGTTG
TCACCTTTATCGGGCGCATTATGCTCATGTTTAAACCCAATTTTATAGTA
AAGTGTTGGTTTGATGTCACAGCTGCCGATATCTTTCAAGCAGCTCTTCA
ATATCATTTTTGTCTTCTTCTTGTGCTATGTTCCAAAAAGACACCCTTAA
GGGTGTTGAATAAccagataaaaatttataaaacttgAGCTAAATAAAAA
GCactaaaaataaagaataattttacttttaaacttctctttaacccttt
gagtgccagggtccttttttctaagttttttttaaaaaatcgctagttca
aactttaagggcttatatttcctgatctagaaggaattagaagctcgtat
atagctcgttggatagcttagagtctcttctttcttttgggcgccttcgg
cgccgcccgatttagg Run BLAST on NCBI protein sequence of TCONS_00028209-protein >TCONS_00028209-protein ID=TCONS_00028209-protein|Name=TCONS_00028209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=315bp
GDKTSGVHPTNEEKAEQLQRQEQARDEADKWLKLSNARREAARNHLLTGE
GPTLQSPNVQSISSREDDDSRNVQSTEASYLQRLSGARKKTTSPTQDGER
TPSESSHKVYSTASQESQHTDYRIPGAQPSSPAPQLPSFTGSEQPLSNHE
PSSTVSAPSLTISASSSTVSAPFSITSSQTNPRPPSYEIITSSPRSDTPI
KSIPSPSSQVISTAESSIAGMSSVASTNNSSQSKNRQKRKSKKTSKTDWN
DVPPGYDQLLHPPNYWEALEFQGQFEEGESNSEQEEEEASACVKPDENWD
VWRLTDNRLDSDNEN Run BLAST on NCBI transcript from alignment at sc0000670:87570..91328- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028209 ID=TCONS_00028209|Name=TCONS_00028209|organism=Clytia hemisphaerica|type=transcript|length=3759bp|location=Sequence derived from alignment at sc0000670:87570..91328- (Clytia hemisphaerica)
CGGGGATAAAACGTCCGGGGTAAGTAACCCCCTTTTTTACAACACCTGTC
CTTAAATACTACCCGAGTATTCATTGCCTCGACCATTAGGCTGGCAGAAT
TATTTCAATAATTATTATTAATGATTAGCTGCAAATTAGCTGATCTCCAA
GCAGATTTTGATTACTCCCTACTGGCATGTATGCACTATAAAGGCCCTCG
CTGTGTAAGAAATGCACATTCACCAATATCCTTTGTGACATGTAATGAAT
TTGAGCTGCTATGAGATTAGAAATTAAAGGTTTTATTTTTACTTAAGTGT
TCCCGTTTTTATATCAGGCACATATTTCATATCAGGACAGTGTCTGCCTA
TTGTTATATTATGCTGGTAAAAGGAAAAAAAAGTTTTTCCTTTCCTCTTT
CTGACCAATCTTGCTCCACATCTGTGTCAATCCAATGTTAAAAAGCTTGT
GAATTCAAATTGATGATTAAGCAAACGATATTACTCTTATTTAAAAACAA
AACCTTTAACTGAAGGATTTGTTTTTGCATAAAATAACATTTTCAAAAAT
TGATTGGAAAAATTAATTTTTTGAGGCCACTGTCATAAGAGAATGTTTTT
TTAGAACTAGAGACACTTTGAGTTTAAAAGCCATTCAGCAAAAAAAAAAA
TCAGAGTCATAAATAATAAAATATATGTGTTGGCCAAGGTACATCCTACG
AACGAAGAAAAGGCTGAACAACAATTTTGAAAAGTCTCCTAAAATCTCCT
AAAATCTCCTTAGGAAATTGAATCTTTGAATACTTTCTCCTAAAATCTGC
TTAAAAATATTTTACCAAGTTTTCAAAAATTTAATTTATTCTGATTATCA
AATTTTCATTGCTAATGATCCTATTCATGGCATACATGATTGTTGACAAA
AGCATTTCACTCTGTATGCTTAATAAAGGTCTTTAAGAACATTGGAAGTT
ATGAAAATTTTGTAGAATTTTCTCCTCAAAAATCCTAAAATTCTTTTAAA
AAGTGTGAAAATCTCCTCAAAACTCCTAAATTTTTTCCCCGNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTT
TCCCCGTAATTTTCAGTTTCTCCTAAAAAAATAGTTGAAAATCACCTAAA
ATCTACTAAATTCTCCTAAATTTTGATCAAAACAAAATAGTGGCAACCCT
GCATTCAGCACAAAAAAAAATCAGAAATCATAAATAATAAAATATATGTA
TGGGCCAAGGTACATCCTACGAACGAAGAAAAGGCTGAACAACTCCAACG
TCAAGAACAAGCACGCGATGAAGCTGACAAATGGTTAAAGTTGAGTAACG
CCAGAAGAGAAGCTGCTAGAAACCATCTTCTAACAGGTGAAGGGCCGACA
CTGCAATCTCCGAATGTACAAAGTATTTCTTCTCGTGAGGACGATGATTC
TAGAAATGTTCAATCAACAGAAGCTTCTTATCTGCAGAGATTAAGTGGAG
CAAGAAAGAAAACAACCTCTCCTACCCAAGATGGTGAGCGAACACCTTCT
GAGTCTTCCCATAAAGTTTATTCGACCGCCTCACAAGAATCACAGCATAC
CGACTACCGAATTCCTGGTGCACAACCATCCTCACCTGCTCCTCAACTTC
CATCATTTACTGGCTCTGAGCAACCTTTGAGCAATCATGAACCATCCTCG
ACTGTCTCTGCACCATCCTTAACTATTTCTGCATCATCCTCTACTGTTTC
TGCGCCATTCTCCATTACCTCATCACAAACTAATCCAAGACCACCTTCAT
ATGAAATTATAACTTCATCCCCAAGAAGTGACACACCTATCAAAAGTATT
CCTTCACCTTCAAGCCAGGTGATCTCAACTGCAGAAAGTTCTATCGCAGG
AATGTCATCAGTTGCATCGACTAATAATTCGAGCCAATCTAAAAATCGTC
AAAAAAGAAAATCGAAGAAGACTTCAAAGACTGACTGGAACGGTACCAAT
TTTTTCACCATTGATTATTCCTAACTGCCCCGCCCCCGGAATATCATATC
AAGAATTTAGGCGATCCTTTAACAAGCGCTGTTTCCAGGCACTGGTCTCT
CCATGTGTGTTTAATACCCATGAGAATTTTCTACAATCAGACTCAGCTAT
GACGCCATATAAGAACGATATAAGAACGCCATTACACTGTGATGAATAGT
AGTTCTAAAGGGCTATTTCCACGCTTTTCACCGAAGATGCCAGAAAAGCG
TTATTTACGGATTAGATCGAAAACAGGAGCTTAATCGGATAATGGTAGAA
TGTATAAGTACAGAGGGAACTAGGTCACAGTGATGCCATAGTCTAATTAG
ATTAAGATTGGGTCTGACAGGAGATTCTTTCAAATTCATTACTTCAGGGG
AACCGTATTTTCAAATTTCGAGGTTATTATTATCGTATTTTCCAGATGTG
CCGCCAGGTTACGATCAACTTCTGCATCCACCCAACTATTGGGAAGCGCT
GGAATTCCAAGGACAATTTGAAGAAGGTGAATCTAACAGTGAACAAGAAG
AAGAAGAAGCCAGTGCTTGTGTTAAACCTGATGAAAACTGGGATGTTTGG
AGATTGACTGATAATAGATTGGATTCTGACAATGAAAATTAGAGACACTT
GGCGACGATTTCAAACATTGAATTTTGAATGTACTTGGATTATTAATTGA
AGGAAATACCGTGCTATTTGTTTAATGAAAACTGGGATGTTTTTGGAGAT
TAGGAGCACTTTTATAACGATTTTATAATATTGAATTTGGAGTTTGAACA
TTTTGTATGTACCTTATCGTTCATTTCATGTTGACGGAAAGGTAGCAACA
AAGACCAGGGAAAACCGGTCCAACATTTCATCCAACATGCCACTTTGATG
AAATGTTAGACCGGTTTGTGCAAATGTAACATTTTCAAAATAAAGAAAAA
TTCATAGAAGAAGAAGAAAACGTTCGTGACGTTTGTTCGGCATCAAACAT
TTGATAACAAAATTTGTTGCTTATCAGACTAGATTTTCATTCAACGTTTT
TAGTTTTCAGTTTCTTTTTTTTCAAATGTTGGTTGAAATGTTGTCACCTT
TATCGGGCGCATTATGCTCATGTTTAAACCCAATTTTATAGTAAAGTGTT
GGTTTGATGTCACAGCTGCCGATATCTTTCAAGCAGCTCTTCAATATCAT
TTTTGTCTTCTTCTTGTGCTATGTTCCAAAAAGACACCCTTAAGGGTGTT
GAATAACCAGATAAAAATTTATAAAACTTGAGCTAAATAAAAAGCACTAA
AAATAAAGAATAATTTTACTTTTAAACTTCTCTTTAACCCTTTGAGTGCC
AGGGTCCTTTTTTCTAAGTTTTTTTTAAAAAATCGCTAGTTCAAACTTTA
AGGGCTTATATTTCCTGATCTAGAAGGAATTAGAAGCTCGTATATAGCTC
GTTGGATAGCTTAGAGTCTCTTCTTTCTTTTGGGCGCCTTCGGCGCCGCC
CGATTTAGG Coding sequence (CDS) from alignment at sc0000670:87570..91328- >TCONS_00028209 ID=TCONS_00028209|Name=TCONS_00028209|organism=Clytia hemisphaerica|type=CDS|length=2844bp|location=Sequence derived from alignment at sc0000670:87570..91328- (Clytia hemisphaerica)
ATGTGCCGCCAGGTTACGATCAACTTCTGCATCCACCCAACTATTGGGAA
GCGCTGGAATTCCAAGGACAATTTGAAGAAGGTGAATCTAACAGTGAACA
AGAAGAAGAAGAAGCCAGTGCTTGTGTTAAACCTGATGAAAACTGGGATG
TTTGGAGATTGACTGATAATAGATTGGATTCTGACAATGAAAATTAGGTA
CATCCTACGAACGAAGAAAAGGCTGAACAACTCCAACGTCAAGAACAAGC
ACGCGATGAAGCTGACAAATGGTTAAAGTTGAGTAACGCCAGAAGAGAAG
CTGCTAGAAACCATCTTCTAACAGGTGAAGGGCCGACACTGCAATCTCCG
AATGTACAAAGTATTTCTTCTCGTGAGGACGATGATTCTAGAAATGTTCA
ATCAACAGAAGCTTCTTATCTGCAGAGATTAAGTGGAGCAAGAAAGAAAA
CAACCTCTCCTACCCAAGATGGTGAGCGAACACCTTCTGAGTCTTCCCAT
AAAGTTTATTCGACCGCCTCACAAGAATCACAGCATACCGACTACCGAAT
TCCTGGTGCACAACCATCCTCACCTGCTCCTCAACTTCCATCATTTACTG
GCTCTGAGCAACCTTTGAGCAATCATGAACCATCCTCGACTGTCTCTGCA
CCATCCTTAACTATTTCTGCATCATCCTCTACTGTTTCTGCGCCATTCTC
CATTACCTCATCACAAACTAATCCAAGACCACCTTCATATGAAATTATAA
CTTCATCCCCAAGAAGTGACACACCTATCAAAAGTATTCCTTCACCTTCA
AGCCAGGTGATCTCAACTGCAGAAAGTTCTATCGCAGGAATGTCATCAGT
TGCATCGACTAATAATTCGAGCCAATCTAAAAATCGTCAAAAAAGAAAAT
CGAAGAAGACTTCAAAGACTGACTGGAACGGGGGATAAAACGTCCGGGAT
GTGCCGCCAGGTTACGATCAACTTCTGCATCCACCCAACTATTGGGAAGC
GCTGGAATTCCAAGGACAATTTGAAGAAGGTGAATCTAACAGTGAACAAG
AAGAAGAAGAAGCCAGTGCTTGTGTTAAACCTGATGAAAACTGGGATGTT
TGGAGATTGACTGATAATAGATTGGATTCTGACAATGAAAATTAGGTACA
TCCTACGAACGAAGAAAAGGCTGAACAACTCCAACGTCAAGAACAAGCAC
GCGATGAAGCTGACAAATGGTTAAAGTTGAGTAACGCCAGAAGAGAAGCT
GCTAGAAACCATCTTCTAACAGGTGAAGGGCCGACACTGCAATCTCCGAA
TGTACAAAGTATTTCTTCTCGTGAGGACGATGATTCTAGAAATGTTCAAT
CAACAGAAGCTTCTTATCTGCAGAGATTAAGTGGAGCAAGAAAGAAAACA
ACCTCTCCTACCCAAGATGGTGAGCGAACACCTTCTGAGTCTTCCCATAA
AGTTTATTCGACCGCCTCACAAGAATCACAGCATACCGACTACCGAATTC
CTGGTGCACAACCATCCTCACCTGCTCCTCAACTTCCATCATTTACTGGC
TCTGAGCAACCTTTGAGCAATCATGAACCATCCTCGACTGTCTCTGCACC
ATCCTTAACTATTTCTGCATCATCCTCTACTGTTTCTGCGCCATTCTCCA
TTACCTCATCACAAACTAATCCAAGACCACCTTCATATGAAATTATAACT
TCATCCCCAAGAAGTGACACACCTATCAAAAGTATTCCTTCACCTTCAAG
CCAGGTGATCTCAACTGCAGAAAGTTCTATCGCAGGAATGTCATCAGTTG
CATCGACTAATAATTCGAGCCAATCTAAAAATCGTCAAAAAAGAAAATCG
AAGAAGACTTCAAAGACTGACTGGAACGGGGGATAAAACGTCCGGGATGT
GCCGCCAGGTTACGATCAACTTCTGCATCCACCCAACTATTGGGAAGCGC
TGGAATTCCAAGGACAATTTGAAGAAGGTGAATCTAACAGTGAACAAGAA
GAAGAAGAAGCCAGTGCTTGTGTTAAACCTGATGAAAACTGGGATGTTTG
GAGATTGACTGATAATAGATTGGATTCTGACAATGAAAATTAGGTACATC
CTACGAACGAAGAAAAGGCTGAACAACTCCAACGTCAAGAACAAGCACGC
GATGAAGCTGACAAATGGTTAAAGTTGAGTAACGCCAGAAGAGAAGCTGC
TAGAAACCATCTTCTAACAGGTGAAGGGCCGACACTGCAATCTCCGAATG
TACAAAGTATTTCTTCTCGTGAGGACGATGATTCTAGAAATGTTCAATCA
ACAGAAGCTTCTTATCTGCAGAGATTAAGTGGAGCAAGAAAGAAAACAAC
CTCTCCTACCCAAGATGGTGAGCGAACACCTTCTGAGTCTTCCCATAAAG
TTTATTCGACCGCCTCACAAGAATCACAGCATACCGACTACCGAATTCCT
GGTGCACAACCATCCTCACCTGCTCCTCAACTTCCATCATTTACTGGCTC
TGAGCAACCTTTGAGCAATCATGAACCATCCTCGACTGTCTCTGCACCAT
CCTTAACTATTTCTGCATCATCCTCTACTGTTTCTGCGCCATTCTCCATT
ACCTCATCACAAACTAATCCAAGACCACCTTCATATGAAATTATAACTTC
ATCCCCAAGAAGTGACACACCTATCAAAAGTATTCCTTCACCTTCAAGCC
AGGTGATCTCAACTGCAGAAAGTTCTATCGCAGGAATGTCATCAGTTGCA
TCGACTAATAATTCGAGCCAATCTAAAAATCGTCAAAAAAGAAAATCGAA
GAAGACTTCAAAGACTGACTGGAACGGGGGATAAAACGTCCGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00028209-exon-sc0000670-1575043694:91310..91328 | TCONS_00028209-exon-sc0000670-1575043694:91310..91328 | Clytia hemisphaerica | exon |
| TCONS_00028209-exon-sc0000670-1575043694:89087..89819 | TCONS_00028209-exon-sc0000670-1575043694:89087..89819 | Clytia hemisphaerica | exon |
| TCONS_00028209-exon-sc0000670-1575043694:87570..88633 | TCONS_00028209-exon-sc0000670-1575043694:87570..88633 | Clytia hemisphaerica | exon |
| TCONS_00028209-exon-sc0000670-1510915933:91310..91328 | TCONS_00028209-exon-sc0000670-1510915933:91310..91328 | Clytia hemisphaerica | exon |
| TCONS_00028209-exon-sc0000670-1510915933:89087..89819 | TCONS_00028209-exon-sc0000670-1510915933:89087..89819 | Clytia hemisphaerica | exon |
| TCONS_00028209-exon-sc0000670-1510915933:87570..88633 | TCONS_00028209-exon-sc0000670-1510915933:87570..88633 | Clytia hemisphaerica | exon |
| TCONS_00028209-exon-sc0000670-1491911889:91310..91328 | TCONS_00028209-exon-sc0000670-1491911889:91310..91328 | Clytia hemisphaerica | exon |
| TCONS_00028209-exon-sc0000670-1491911889:89087..89819 | TCONS_00028209-exon-sc0000670-1491911889:89087..89819 | Clytia hemisphaerica | exon |
| TCONS_00028209-exon-sc0000670-1491911889:87570..88633 | TCONS_00028209-exon-sc0000670-1491911889:87570..88633 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000670 | supercontig | sc0000670:87570..91328 - |
Blast
The following BLAST results are available for this feature:
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