|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028212 ID=TCONS_00028212|Name=TCONS_00028212|organism=Clytia hemisphaerica|type=transcript|length=1678bp
ACAGAATCAAAaaagtatatttaaaaaagggaaaataaaaaatatgattG
GAGTTATCAATgctatatagatacatggatctAGTCGATAAATGAATGGT
CTGGTAGTGGTAGATCGGTGAtaatttgttgtcaatattggTTTATTTAT
TGTTAATTTTTCCTGGCATTTTTAGTAGTTTGATTTCGCCGTGGTCGACT
CAAAATTCTACTGGACTACAATGGTGTGAATGAAAGAAGTTCTGTTTCCA
GTGTTTTAATATACTGCCTGTTGGTTCGATATTTTCACACTTGCACTGCA
AATAAACGCAGATATCGTACAAGTTTTCATGCTCAAAATGTTTTGCAGAC
CTTCTCTGTAAGACTACTGTATGTGTGAacattatctttttaacaatgGC
ATCACAAATTCAAAACGACAATCTGAAAATACATAATGCTCACAGTGAGA
GAAAGATTGATCAACAAAATGCTGCTGGATTCCGAGAAGATTCAAATCAA
GAAATGNAAAGATTGATCAACAAAATGCTGCTGGATTCTGAGAAGATTCA
AATCAAGAAATAGATTCAGTTAGGGTAGTTGGTAATGTTGATAGTGTAGT
GAACCTCCTCAGGGAAGAAATCAAGAACTTGAAAACTCAATATGAAATGG
ATAAACTGAGAATGGAAAATGACAATCTGAAGAAATATTGTGACTTCGAG
AAATTGAAATCAAAACTTCAAAGTGATGTTTTCGAGAAAGCAAATGAAGT
AAAGGAGTTGCGAAAGGACATTGAAATgttaaaattgacgtcagaGAATG
CTCTACTGAAAGCTGAGAAACAATTTGGTATTGAAAAGGATGTTTTGGTT
GCGGAGAAAATGACATTGGAGCAAGATGTAAAAACTTTAAAAGCAGAAAA
TGAAGAATTGAAAGAAAACAAGAGAGATGATATTGAAAAACGTATAATTG
AAATGAAGAAATCCCAcgctgaaattttaaaatttcaaaacgaaaatcgt
gaaattgcaaaaaacaatGGAATCATGGAATGTGAAATCCataaatttga
tcaaaaaattgataatttgatggttgaaaataaaagattaaaaGATGAGC
TAGAAATAACAAAAAACACACTTGATGAATTGGAAATAGCATCACAAAAA
TCGGCCAAATTAGTACCCGATTTTATGAAAACACCTTTTCCCGACTTGGT
GGAATTTACTCTTTATGTTCTCGATAAGGAAGAACACTATCCACACTACG
AGAAAATGTTCCAGGCTTTGAATTACGATTTAATTAGTGGTCGAACAGCA
GGAGAAGTATTAATTTTCAGATTGGCATTTTCGTCGAAAATTCTTCTACC
GGACGGATGTGTTCATCATTTAAACTTGCGGGACCGTTTACGAAAAATTT
GGAATGATATCAAGTGTGTTAGAATTCTTCACCCAACTGATAACCGTAAA
TCCATCGTCTTAGAAAAACGCTGCGAAGAGGGACTTTGGAATCTAGAAAT
CAATTATGACTTTGCAGTTAAtgtgaaaaatacaaaaggtCTTTATTTTT
TGGTGCTCGCAAAGAAAAAGCTTTTTGCGGAATTCCATTAAGTTTATTAG
TTACTTTAAtaagggaagaaaatttggtgaattgccttaaaatttagcca
aactggccaaaatttaatacctctcaat Run BLAST on NCBI protein sequence of TCONS_00028212-protein >TCONS_00028212-protein ID=TCONS_00028212-protein|Name=TCONS_00028212-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MDKLRMENDNLKKYCDFEKLKSKLQSDVFEKANEVKELRKDIEMLKLTSE
NALLKAEKQFGIEKDVLVAEKMTLEQDVKTLKAENEELKENKRDDIEKRI
IEMKKSHAEILKFQNENREIAKNNGIMECEIHKFDQKIDNLMVENKRLKD
ELEITKNTLDELEIASQKSAKLVPDFMKTPFPDLVEFTLYVLDKEEHYPH
YEKMFQALNYDLISGRTAGEVLIFRLAFSSKILLPDGCVHHLNLRDRLRK
IWNDIKCVRILHPTDNRKSIVLEKRCEEGLWNLEINYDFAVNVKNTKGLY
FLVLAKKKLFAEFH Run BLAST on NCBI transcript from alignment at sc0000670:100240..102198- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028212 ID=TCONS_00028212|Name=TCONS_00028212|organism=Clytia hemisphaerica|type=transcript|length=1959bp|location=Sequence derived from alignment at sc0000670:100240..102198- (Clytia hemisphaerica)
ACAGAATCAAAAAAGTATATTTAAAAAAGGGAAAATAAAAAATATGATTG
GAGTTATCAATGCTATATAGATACATGGATCTAGTCGATAAATGAATGGT
CTGGTAGTGGTAGATCGGTGATAATTTGTTGTCAATATTGGTTTATTTAT
TGTTAATTTTTCCTGGCATTTTTAGTAGTTTGATTTCGCCGTGGTAATTT
TTGATACATACTGTAGTTTTCTTAAAAGTTCGCTTCTTGCTCTTATGAAA
GTATTTACTAGAAAACAAATTAAATTACCAAAGAGGCGCCGAAAAATTTG
TAATCAGGGACGCCTCTTTGCATCCTTGGTCTTTTGGTACCAGTGGTCTT
TTGGCACCACTGTTCTTTTGGCACCCCCAAAAAAATCAGGGGCTTAAACT
GCTTGCTTTTTATTGTTTTAACACAGTCTGGTTTGATCCATTTGCTTTCG
ATGTCAACAACAAATTTTTTCTAGGTCGACTCAAAATTCTACTGGACTAC
AATGGTGTGAATGAAAGAAGTTCTGTTTCCAGTGTTTTAATATACTGCCT
GTTGGTTCGATATTTTCACACTTGCACTGCAAATAAACGCAGATATCGTA
CAAGTTTTCATGCTCAAAATGTTTTGCAGACCTTCTCTGTAAGACTACTG
TATGTGTGAACATTATCTTTTTAACAATGGCATCACAAATTCAAAACGAC
AATCTGAAAATACATAATGCTCACAGTGAGAGAAAGATTGATCAACAAAA
TGCTGCTGGATTCCGAGAAGATTCAAATCAAGAAATGNAAAGATTGATCA
ACAAAATGCTGCTGGATTCTGAGAAGATTCAAATCAAGAAATAGATTCAG
TTAGGGTAGTTGGTAATGTTGATAGTGTAGTGAACCTCCTCAGGGAAGAA
ATCAAGAACTTGAAAACTCAATATGAAATGGATAAACTGAGAATGGAAAA
TGACAATCTGAAGAAATATTGTGACTTCGAGAAATTGAAATCAAAACTTC
AAAGTGATGTTTTCGAGAAAGCAAATGAAGTAAAGGAGTTGCGAAAGGAC
ATTGAAATGTTAAAATTGACGTCAGAGAATGCTCTACTGAAAGCTGAGAA
ACAATTTGGTATTGAAAAGGATGTTTTGGTTGCGGAGAAAATGACATTGG
AGCAAGATGTAAAAACTTTAAAAGCAGAAAATGAAGAATTGAAAGAAAAC
AAGAGAGATGATATTGAAAAACGTATAATTGAAATGAAGAAATCCCACGC
TGAAATTTTAAAATTTCAAAACGAAAATCGTGAAATTGCAAAAAACAATG
GAATCATGGAATGTGAAATCCATAAATTTGATCAAAAAATTGATAATTTG
ATGGTTGAAAATAAAAGATTAAAAGATGAGCTAGAAATAACAAAAAACAC
ACTTGATGAATTGGAAATAGCATCACAAAAATCGGCCAAATTAGTACCCG
ATTTTATGAAAACACCTTTTCCCGACTTGGTGGAATTTACTCTTTATGTT
CTCGATAAGGAAGAACACTATCCACACTACGAGAAAATGTTCCAGGCTTT
GAATTACGATTTAATTAGTGGTCGAACAGCAGGAGAAGTATTAATTTTCA
GATTGGCATTTTCGTCGAAAATTCTTCTACCGGACGGATGTGTTCATCAT
TTAAACTTGCGGGACCGTTTACGAAAAATTTGGAATGATATCAAGTGTGT
TAGAATTCTTCACCCAACTGATAACCGTAAATCCATCGTCTTAGAAAAAC
GCTGCGAAGAGGGACTTTGGAATCTAGAAATCAATTATGACTTTGCAGTT
AATGTGAAAAATACAAAAGGTCTTTATTTTTTGGTGCTCGCAAAGAAAAA
GCTTTTTGCGGAATTCCATTAAGTTTATTAGTTACTTTAATAAGGGAAGA
AAATTTGGTGAATTGCCTTAAAATTTAGCCAAACTGGCCAAAATTTAATA
CCTCTCAAT Coding sequence (CDS) from alignment at sc0000670:100240..102198- >TCONS_00028212 ID=TCONS_00028212|Name=TCONS_00028212|organism=Clytia hemisphaerica|type=CDS|length=945bp|location=Sequence derived from alignment at sc0000670:100240..102198- (Clytia hemisphaerica)
ATGGATAAACTGAGAATGGAAAATGACAATCTGAAGAAATATTGTGACTT
CGAGAAATTGAAATCAAAACTTCAAAGTGATGTTTTCGAGAAAGCAAATG
AAGTAAAGGAGTTGCGAAAGGACATTGAAATGTTAAAATTGACGTCAGAG
AATGCTCTACTGAAAGCTGAGAAACAATTTGGTATTGAAAAGGATGTTTT
GGTTGCGGAGAAAATGACATTGGAGCAAGATGTAAAAACTTTAAAAGCAG
AAAATGAAGAATTGAAAGAAAACAAGAGAGATGATATTGAAAAACGTATA
ATTGAAATGAAGAAATCCCACGCTGAAATTTTAAAATTTCAAAACGAAAA
TCGTGAAATTGCAAAAAACAATGGAATCATGGAATGTGAAATCCATAAAT
TTGATCAAAAAATTGATAATTTGATGGTTGAAAATAAAAGATTAAAAGAT
GAGCTAGAAATAACAAAAAACACACTTGATGAATTGGAAATAGCATCACA
AAAATCGGCCAAATTAGTACCCGATTTTATGAAAACACCTTTTCCCGACT
TGGTGGAATTTACTCTTTATGTTCTCGATAAGGAAGAACACTATCCACAC
TACGAGAAAATGTTCCAGGCTTTGAATTACGATTTAATTAGTGGTCGAAC
AGCAGGAGAAGTATTAATTTTCAGATTGGCATTTTCGTCGAAAATTCTTC
TACCGGACGGATGTGTTCATCATTTAAACTTGCGGGACCGTTTACGAAAA
ATTTGGAATGATATCAAGTGTGTTAGAATTCTTCACCCAACTGATAACCG
TAAATCCATCGTCTTAGAAAAACGCTGCGAAGAGGGACTTTGGAATCTAG
AAATCAATTATGACTTTGCAGTTAATGTGAAAAATACAAAAGGTCTTTAT
TTTTTGGTGCTCGCAAAGAAAAAGCTTTTTGCGGAATTCCATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028212-exon-sc0000670-1575043694:102006..102198 | TCONS_00028212-exon-sc0000670-1575043694:102006..102198 | Clytia hemisphaerica | exon |
| TCONS_00028212-exon-sc0000670-1575043694:100240..101724 | TCONS_00028212-exon-sc0000670-1575043694:100240..101724 | Clytia hemisphaerica | exon |
| TCONS_00028212-exon-sc0000670-1510915933:102006..102198 | TCONS_00028212-exon-sc0000670-1510915933:102006..102198 | Clytia hemisphaerica | exon |
| TCONS_00028212-exon-sc0000670-1510915933:100240..101724 | TCONS_00028212-exon-sc0000670-1510915933:100240..101724 | Clytia hemisphaerica | exon |
| TCONS_00028212-exon-sc0000670-1491911889:102006..102198 | TCONS_00028212-exon-sc0000670-1491911889:102006..102198 | Clytia hemisphaerica | exon |
| TCONS_00028212-exon-sc0000670-1491911889:100240..101724 | TCONS_00028212-exon-sc0000670-1491911889:100240..101724 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000670 | supercontig | sc0000670:100240..102198 - |
Blast
The following BLAST results are available for this feature:
|
