TCONS_00028216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028216
Unique NameTCONS_00028216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1166

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028216 ID=TCONS_00028216|Name=TCONS_00028216|organism=Clytia hemisphaerica|type=transcript|length=1166bp
cggcgcacaacaagattcttgttgtagaattttccgcgggaggactattt
tcctcagatgtataattttcaagcgcctttagaggtttaccgtgcgcgta
aaaaaattacgatcagctgttatcaggttaattTTTTTAGACCAGTGAAT
TGTAATATGTTTCCTGCCCTGGGCCCGCAAAATTCGCCGTTAGCCGCCGG
GTCTACATAAAAGCCCTTCTTCATTCGCTACTTCTTTATCTTAACCAGAA
ACAACTCTGAGATATTGGTGAATAATTTGATATCGCTGTCTTCCTTATAA
AGTctttctcaaaataatttggagTGGAGCCAAAGAtagaaaataacttt
tgatagaaataGAATCAAATAGTGCTGTTTTAAACCTTgatgaaaagata
ttcaagagTGGCGTAACATTATTATAATTAATAACATTTCCTCATAGATT
cactaaaatacaaaaaaaaatgacATAACAATTTTACCAActgtaaaagt
aaaaattttcgtGTAATGACTAATTCCAATTATTGTGGATGTGCTTGCCT
ATGTGGTTTAATATTTTTTGTCCTTACCGGTGGACTATGTTTAGGTTTCA
GTAATCGAACTTATAGTCGTAAAGCTATGGAGTATGATGAAGACGGGAAA
GTCATTATACCACAAGACTGGATTGAAGAAACTAAAGCGTTAAAGTTATC
TGGAATTGTTTTACTTACTATTGGTTTATTATTGGTTTCGATTGATCTTT
GTCTTTGGTGCAATGGTAAATGCAAAGGTGATGATATTGAAGCAACCGAA
ATTGAACAACCTTTAGCTGGAGAAATAAATACCAGGGATGAAGatccACC
CCCAAGTTATGCCGATGTTATGCGATTATGAAAAAGTCTTGATATTGCCT
TTATAATTTTTgtataatatattgtatttttcgtataaaatttatcttaT
TTTGTATCATACTTTATTTAATCACTATTATCAACATacattttataaat
aaaatttatttatatcttTTGCACAGGATTTCGACATATTTTATTTGAAG
CTTTACTCAACCTTTTActataacaatttttagagGGTAAATCTTTTCTG
TtcgaaccacaagtgattttgtgGTTAAGATATTCTGGCTAAGTCATTGC
AGTAACGCAGTGCTGA
Run BLAST on NCBI

protein sequence of TCONS_00028216-protein

>TCONS_00028216-protein ID=TCONS_00028216-protein|Name=TCONS_00028216-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MTNSNYCGCACLCGLIFFVLTGGLCLGFSNRTYSRKAMEYDEDGKVIIPQ
DWIEETKALKLSGIVLLTIGLLLVSIDLCLWCNGKCKGDDIEATEIEQPL
AGEINTRDEDPPPSYADVMRL
Run BLAST on NCBI

transcript from alignment at sc0000670:114468..120252-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028216 ID=TCONS_00028216|Name=TCONS_00028216|organism=Clytia hemisphaerica|type=transcript|length=5785bp|location=Sequence derived from alignment at sc0000670:114468..120252- (Clytia hemisphaerica)
CGGCGCACAACAAGATTCTTGTTGTAGAATTTTCCGCGGGAGGACTATTT
TCCTCAGATGTATAATTTTCAAGCGCCTTTAGAGGTTTACCGTGCGCGTA
AAAAAATTACGATCAGCTGTTATCAGGTTAATTTTTTTAGACCAGTGAAT
TGTAATATGTTTCCTGCCCTGGGCCCGCAAAATTCGCCGTTAGCCGCCGG
GTCTACATAAAAGCCCTTCTTCATTCGCTACTTCTTTATCTTAACCAGAA
ACAACTCTGAGATATTGGTGAATAATTTGATATCGCTGTCTTCCTTATAA
AGTCTTTCTCAAAATAATTTGGAGTGGAGCCAAAGATAGAAAATAACTTT
TGATAGAAATAGAATCAAATAGTGCTGTTTTAAACCTTGATGAAAAGATA
TTCAAGAGTGGCGTAACATTATTATAATTAATAACATTTCCTCATAGATT
CACTAAAATACAAAAAAAAATGACATAACAATTTTACCAACTGTAAAAGT
AAAAATTTTCGTGTAATGACTAATTCCAATTATTGTGGATGTGCTTGCCT
ATGTGGTTTAATATTTTTTGTCCTTACCGGTGGACTATGTTTAGGTTTCA
GTAATCGAACTTATAGTCGTAAAGCTATGGAGTATGATGAAGACGGGAAA
GTCATTATACCACAAGACTGGATTGAAGAAACTAAAGCGTTAAAGTTATC
TGGAATTGTTTTACTTACTATTGGTTTATTATTGGTTTCGATTGATCTTT
GTCTTTGGTGCAATGGTAAATGCAAAGGTGATGATATTGAAGCAACCGAA
ATTGAACAACCTTTAGCTGGAGAAATAAATACCAGGGATGAAGGTCAGAT
AAGTTTCTTTTCGCGTGGTGCACAAAATCATTGCTAGCCTCAGCAAGTAT
TTCAACATTGAATTTTTTTCGCTTAAAAGCAAGGAAACCTGAAGTCAATT
TTTCTTGATTCGATATAAAACCTAGAGAAAAAACTTTATTTTAGAAAAAT
GACTTGCAGCTCTTTTGATTCAAATATTTTTCGAACATCTATTGACAGGC
TTATCAATCCTAGGCAAAATTCAGCAAAATCCAAAAATATTTTGACATAG
AGCTTTCTTTCTTCACATTTTTGATTCCATTGTGTTTGGGGAAAAATTTG
GTTTTGAAGTAAGTTCATAATGACAGCCTTTGACAAGAGATACTGCTTTT
TTACAAAAAAGAATTGACTTACAGCTTTCTTGCTGTTAAGCAACGATTTA
CACTCAATGCAAGCAGTAATCTACCTTATGAGGCCCTCAAGTGGTTTTCG
TAAAGACGTGATAGGGACCTTTTTCTTGCGTGATTACGTGATTTGGAAAT
TTTTTCTTCGTGATTGCGTGATCAGAGGTCAAAGCGTGATTTGAAAGATT
TTTGAGCCGTGATGCGTAATTTGGACTTTTTCAAAGGGATGCGTGATTAT
CCAATTTTTTTGCTGATTTTTGTCATCGTGATTGAAGACAAAAGATTGCG
TGATATCGTTGCGCGATCAGACTTACCGCTGGGGGGGCCTCTTATACATA
AAAATTCGCACCGGCTTCCACTTACTATTAAAGACTGTAAACGTTTTTTA
ATATAGTTTATATAAGAAAATAAGGCTTCGATAGCCAAAATATTAAGAAC
AAGTTATGAACATCTAAGCCTTGCAGACCCTGAAACACCCGATTATCTAG
AAAAATGGAGAAAATGGGGAAAATAAGACCATGCTAAGGACATTTTAAGG
TTTAAAACAAAAAAAAAAACTTAGACATGTACACCTTAAAAGAACTTTGA
AGAGTGTGGTTAGTACCTACATCTTGCCGGAATCCATTTCTTTTTATAAG
GCTTTAACACAGACTTTTGATAGAAATTGTATTATTTTGGCGTTTTGGTA
TTCCCAGAACACACCCACAAACGTAAATTGTGTTCCCTTTTGGTATACAT
ATATTGCTTCTCGCCAAAATACATATATTAGTTCTCGCCAAAATACATAT
ATTAGTTCTCGCCAAAATACATATATTGCTTCTCGCCAAAATCTTTTTTG
TTTGTTTGCATTTTGTCTAAATAACCCCTAAATTTCATCAAAATTGTTCA
AATTAAGGAGAAAGAGGACAGATTTCGAGTGTCATTCGCCGAAATTAGTT
CTCGTCAAAATTAAAATGTTTGCCCATTCACTAAAATAAGTTCTCACCCA
CATTAAAAATCTTCAATATTTTCGCTGCTCACCAACAATTGTTCTTGCCA
AAATAAGGTCGACCTTAATTTAGTAAGATTACAGCTGTATGTATTTGAAA
TGGCTATTATATCCCGTTCTTGAGAGTAGTATACTGGAAAATGAATTTGA
TATAAAATTTAGTTTGAAGAAAAGATTATCCTTTTTTGCGAAGCGAATAT
ACATGAGCGAAGCAGTTTTGCTATCGTGTATATGTACCTTTAAATCTCAC
CTACGCTGGGGAGCGCAAATGAAAAATCACTATANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAT
CGCGGCGGAGAGACCTGGAATTACGGATGGTTAAATTCGTTTTTTTCAAA
AAGTGTCGCCTCGTGCGTTTAGATATACCAATTCTTAAAAGCTACGGAGG
TAATACACCCGGTTACCGGTACTAGATAAACCTTGTTTTTATCTCCTTAA
GGTTTAAATTAGGAAATCTGAAGAAGAGGTCGGAAAATCAGCGCGGGCTG
GAAGCGTTCAAGAAGCGTTTAAATGGCGCTCATTTTTCAAGAAGTCATTG
CATTGACTCGAGCAAAGACTTTCGAAGGGCTTTCGAACTTTTCCAAATTC
GAATGTTGACTAAAAACAACATTGTTTTGAAAAGAGAAATTGGTGTTTTG
AAAAGAGATGATGCTTGATGAAAAGAAACGAAGAAAGCAGCTGAACTTGC
GGAATGAGAAAAAAGAAGATGGAATTTTTATTCTTTCATCGACAGGCAAG
GCTCAACAGAGTTGTTGCTTCATTGCAAGAAGAGGATCTAAAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNTGTATACATATGGTGGGAAAGCCATTCCTTTTGGCTTTTG
GTTTAGATTGAATCTTGGTAGTATGTTGAAGTGCTGGACTTTTTGTATAT
TTTGAATTGATAGGAACAAAAATATTTTGCGCTTTTGGATATGGCTAACC
TGGAAGAATTTATTCCGCCCCTTATGGCCTTATCCAGTGGAAGGAGAAAT
GTTTGTTTGTCGTTGTTTATGAAATTTTGGCTTGACCGACCCTCGATGAT
GTGGGATCTTTGGTTGTTGTTTGTTGTTTATGAATACTGGGAATACGCAT
CGATGGTCAGAGAAATAGAACATTGACATGTGATTGTATTAAAAGATTTT
ATTGTTGGTGATGGTAATTAATGGTAATGACTTGTAAAATGTCGAAATAC
AACGACAAAACATGACATATTATGTTTATGGGTGCATTTTAACTGTTTTA
AATTCCTGTATGCTACAGCCGAGAAAAAAGTCACCGATTTTTTACTTTTT
ATGTGAAGAGTTTGCTCCTGTTTGTCAACAACTCGAGTAAGAGGGTAAAA
GTCTGTCAAGTACTGTACTTGCCTCCACAGCAAACTTAAGCTAAGAGTTT
CCCAACTTTGAAAAAAATCACAGCCAGTAAAAGGTTTTACTTACTTTAAT
CGTAGAAATTTTAGCGAGAGTAATTTTAGCGTATATTAGCGAGTCAGGAA
AATCTTGATTTTTTTTGGATTTATNNTCGCGTGGATAAATTTTAGCGAAT
ACTTGTCTGAGAAAATTTCGCGTGGATTAATTTTAGCGAATCGCCATTTC
CAAATAACTTTTTGAGATGTATTTTGGTGAACAAAAAAGAAGAAAAAAAA
GAAGAAAAAAACTGGATTTATTTTAGCGAATAGTGTTTTGGAAAAATTTA
GCGCGGATAAATTTTAGCGATCTGTCGATTCGGCGTGTTTTAGCGAGATT
AATTTTAGCGAAAATAGGGAAAACTCGCTAAAACGCTAAAATTAGTCTCG
CTAAAATTTCTACGATTAAAGTACCATGTCAGTTTTTTTATCTGGTTTTT
CTTTATTTTTATCTCAGGATTTTACAGCGCTAATAGTTTAGATATAATTT
TAGAACTTTGTTAAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGTTATTGAATTTTTAAACTACATAAGACAACTTATTTCTATT
AAATTCTAGTCTTGAAATCCTCTGTATTTCACATCTCTGTCTCAATAAAC
CGAGCGACTTTTTTTAATTCTCAGGGCTCTTTGAAAGGAAGACCTTTTGA
AGAGGCTAGAGAGGTATTTTCCCTCCAGGGACGAAATTTTTGCCAAGTTT
TCCAGCGGGTCTATGACACAGGGGTGTTTATGTTAGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGAGGCTCGGTCTCCC
TGAACCTGAGCAGTTGTCGGGGTTTCGCGGGGTTTACATTTACGAATTGA
TTATCAATCTATTTTAACTTGCAATTTGTGTGTGACCCTATAAATATTTT
GCTTGCAACTTGCGAATCGAGTGACTTGCCTGGATCGCTTCGCAATTCTT
ATACATATACACTAGTTCCTAACTTGAAACTTTTTTTAAGGTAATGACAA
CGATGTTTGTTCCATAGACATGACCATTACTTAGATTTTATCTCAATCTT
TTTTCTTTTTAGATCCACCCCCAAGTTATGCCGATGTTATGCGATTATGA
AAAAGTCTTGATATTGCCTTTATAATTTTTGTATAATATATTGTATTTTT
CGTATAAAATTTATCTTATTTTGTATCATACTTTATTTAATCACTATTAT
CAACATACATTTTATAAATAAAATTTATTTATATCTTTTGCACAGGATTT
CGACATATTTTATTTGAAGCTTTACTCAACCTTTTACTATAACAATTTTT
AGAGGGTAAATCTTTTCTGTTCGAACCACAAGTGATTTTGTGGTTAAGAT
ATTCTGGCTAAGTCATTGCAGTAACGCAGTGCTGA

Coding sequence (CDS) from alignment at sc0000670:114468..120252-

>TCONS_00028216 ID=TCONS_00028216|Name=TCONS_00028216|organism=Clytia hemisphaerica|type=CDS|length=732bp|location=Sequence derived from alignment at sc0000670:114468..120252- (Clytia hemisphaerica)
ATCCACCCCCAAGTTATGCCGATGTTATGCGATTATGAATGACTAATTCC
AATTATTGTGGATGTGCTTGCCTATGTGGTTTAATATTTTTTGTCCTTAC
CGGTGGACTATGTTTAGGTTTCAGTAATCGAACTTATAGTCGTAAAGCTA
TGGAGTATGATGAAGACGGGAAAGTCATTATACCACAAGACTGGATTGAA
GAAACTAAAGCGTTAAAGTTATCTGGAATTGTTTTACTTACTATTGGTTT
ATTATTGGTTTCGATTGATCTTTGTCTTTGGTGCAATGGTAAATGCAAAG
GTGATGATATTGAAGCAACCGAAATTGAACAACCTTTAGCTGGAGAAATA
AATACCAGGGATGAAGATCCACCCCCAAGTTATGCCGATGTTATGCGATT
ATGAATGACTAATTCCAATTATTGTGGATGTGCTTGCCTATGTGGTTTAA
TATTTTTTGTCCTTACCGGTGGACTATGTTTAGGTTTCAGTAATCGAACT
TATAGTCGTAAAGCTATGGAGTATGATGAAGACGGGAAAGTCATTATACC
ACAAGACTGGATTGAAGAAACTAAAGCGTTAAAGTTATCTGGAATTGTTT
TACTTACTATTGGTTTATTATTGGTTTCGATTGATCTTTGTCTTTGGTGC
AATGGTAAATGCAAAGGTGATGATATTGAAGCAACCGAAATTGAACAACC
TTTAGCTGGAGAAATAAATACCAGGGATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015973XLOC_015973Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028216-proteinTCONS_00028216-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028216-exon-sc0000670-1575043694:119410..120252TCONS_00028216-exon-sc0000670-1575043694:119410..120252Clytia hemisphaericaexon
TCONS_00028216-exon-sc0000670-1575043694:114468..114790TCONS_00028216-exon-sc0000670-1575043694:114468..114790Clytia hemisphaericaexon
TCONS_00028216-exon-sc0000670-1510915933:119410..120252TCONS_00028216-exon-sc0000670-1510915933:119410..120252Clytia hemisphaericaexon
TCONS_00028216-exon-sc0000670-1510915933:114468..114790TCONS_00028216-exon-sc0000670-1510915933:114468..114790Clytia hemisphaericaexon
TCONS_00028216-exon-sc0000670-1491911889:119410..120252TCONS_00028216-exon-sc0000670-1491911889:119410..120252Clytia hemisphaericaexon
TCONS_00028216-exon-sc0000670-1491911889:114468..114790TCONS_00028216-exon-sc0000670-1491911889:114468..114790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:114468..120252 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.38118	3.11072	1.66269	1.654	1.6971	1.69936	1.2892	1.33179	1.03198	0.761895	1.70141	0.926091	1.29964	1.32516	0.566846	0.923449	2.60449	3.67322	2.17718	2.60961	3.42699	2.25486	4.4423	3.8901	1.82291	1.76245	3.05483	2.8974	2.76304	2.63374
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top