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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028218 ID=TCONS_00028218|Name=TCONS_00028218|organism=Clytia hemisphaerica|type=transcript|length=1389bp
AACTACATTGGAAGTTTCTTATTTTAGgactaaagtaaaaaaaaaaaaaa
agattcgcTGCTTTGATTAATTCTGCATGGATTGCATGAAACACTGTTGG
AATGGCTGGGTTTGTGCATTCggttttgttttcattattgTGGGTGGAGT
TTTTTTGATAATTGGTAATGGTGAAATCAGTAACAAATATAGGACATATA
AATACATGATAAATCCTGAATGCATTGATGATCATTCAATCACTTGTCAA
TACCGTACACCAGATCACATTAAAGAAGACAAGCGCCGAGAAATTACGAT
CGGACTAATATTACTCGTAATTGGGTCAATAATAGCAGTGGTAGATATAA
GTTCTTGCGTCCTGCAGTGTTTAAATGGAAACACCTCTTCCTCAGGTGAT
AGTGAAGTTGAATACCAAGATCCTCTAACGCAGACCTCGTCTGTCAGGGA
GGAGGAGAGTAACAATAGGAGACTCTCTGGTGACTATGAATTGAACTTGA
TTTTCCCAGATCGCAGTGATCAGCAACATAATTCTGTCTCTCCAAACCAT
CCTATGACTGTAAATCTACCACAGTCTAAAAGCAATCATTCGCCAGGATA
TCCAGTTAGATCTAGGAACGAAAACCAGGGACAACTTTTATCAGATGCAC
CGCCTTCATATTTTGAAGTTATGCAATCAGGAAGTTCAACGTCTCGACCA
TAACATTTATTCACAACGATGTAGAATTTTGTGATAATTGGCAACAAGTT
TTTAATAGTTTATTCAAACAGTGCATCCAGATAAAAAACAACGAATTCAA
TGTATAAAAAATCAAGACAATACTGTTAACAGTTGTACCATCAATGTGTG
TATATATGACCTGATCTATTTattcttctttcatttttcttctttttttc
tgaaatttgtaCATTTTTACACCTTATATTTATATATGCACCTTACATAT
ATCATTATCTATACTATACATTatctatacacgtttttttttataagaac
aaactatataagaacataaggcttcgaggcccaaaaaattaagaacattc
taagaacattctaaggctttggagacttaaaaacatgcattttcttaaga
aatcacatcaaaatgctcaaaaaatgctgaaaataagaacattttaggaa
catttttaggcttcaaatccaaaaaactaagaacatccgaaggcttcgaa
aatttttgacgttcttataaaaaaaaacgtgtattttataccattcaaaa
tGGTTGTAAGATGGTGTAGCTATCTAATATAATAATGTAAATGTCTTTAC
ATGCAAATAAACAACGGGTCGATTCCGTGTAATATTCACGAAAAAATTCT
TAAGTAAATGTTACCAGGATTAGTATATACCACCTTCGC Run BLAST on NCBI protein sequence of TCONS_00028218-protein >TCONS_00028218-protein ID=TCONS_00028218-protein|Name=TCONS_00028218-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
MDCMKHCWNGWVCAFGFVFIIVGGVFLIIGNGEISNKYRTYKYMINPECI
DDHSITCQYRTPDHIKEDKRREITIGLILLVIGSIIAVVDISSCVLQCLN
GNTSSSGDSEVEYQDPLTQTSSVREEESNNRRLSGDYELNLIFPDRSDQQ
HNSVSPNHPMTVNLPQSKSNHSPGYPVRSRNENQGQLLSDAPPSYFEVMQ
SGSSTSRP Run BLAST on NCBI transcript from alignment at sc0000670:120925..123016- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028218 ID=TCONS_00028218|Name=TCONS_00028218|organism=Clytia hemisphaerica|type=transcript|length=2092bp|location=Sequence derived from alignment at sc0000670:120925..123016- (Clytia hemisphaerica)
AACTACATTGGAAGTTTCTTATTTTAGGACTAAAGTAAAAAAAAAAAAAA
AGATTCGCTGCTTTGATTAATTCTGCATGGATTGCATGAAACACTGTTGG
AATGGCTGGGTTTGTGCATTCGGTTTTGTTTTCATTATTGTGGGTGGAGT
TTTTTTGATAATTGGTAATGGTGAAATCAGTAACAAATATAGGACATATA
AATACATGATAAATCCTGAATGCATTGATGATCATTCAATCACTTGTCAA
TACCGTACACCAGATCACATTAAAGAAGACAAGCGCCGAGAAATTACGAT
CGGACTAATATTACTCGTAATTGGGTCAATAATAGCAGTGGTAGATATAA
GTTCTTGCGTCCTGCAGTGTTTAAATGGAAACACCTCTTCCTCAGGTGAT
AGTGAAGTTGAATACCAAGATCCTCTAACGCAGACCTCGTCTGTCAGGGA
GGAGGAGAGTAACAATAGGAGACTCTCTGGTGACTATGAATTGAACTTGA
TTTTCCCAGATCGCAGTGATCAGCAACATAATTCTGTCTCTCCAAACCAT
CCTATGACTGTAAATCTACCACAGTCTAAAAGCAATCATTCGCCAGGATA
TCCAGTTAGATCTAGGAACGAAAACCAGGGACAACTTTTATCAGGTAATA
AATGTGACTTCCAAGCGATATAAAGTACCTGAAAATCGGAACGGTCTTGG
TACGTACGTACGTTCACTGACCTTTATATATCCCTGGACTCAATGTCGGT
CAAGCAAAATAATATTATGATCGTAGTTTTTATGAAATTGATACCCGCGG
AGAGAGAGCGCTAGATCTAGTCTCGCTTGTACACTAAAAATTATGTAGCG
CCGTTTGTCGTTAGGCAAAGTTTCAAACACTACAATGGCGGGTACCAATT
CCAAAAAAACTTCGATCAAAGATGGCGGATATAGCTTGTTCCATGGATAT
ATAAAGGTCAGTGCGTACGTCAGACCAGTTAGTGCTCGTTAGTGTTGGTT
AGTAACAATTATATCAAACAAACTGTTATAAAAGGATGTCGACCGGTCGA
TCAAGGGTCGGTCTAGGACCGGACGCATCGAAGTGGCCGGTAAATTGACC
GTGGCAGCCTTTTGGCCTATTATAATTGAGTCAAGATAGTAATAGAATCG
GGATTTCAATCATTTTCTGTATAGGTACTAAAAAACAAGTTTATATTGTT
TGATGACGTAATCTTTACCTTGACTCATGAGCCATTTGATGTATAAGGAA
ACAGCCATGATACCACTAAAATAATATTATACCATGCATAATTGTCTACT
CTTCTTCTTGTTTTCGATATCTTGATTTCTTCCGTTTTGATTTTTAGATG
CACCGCCTTCATATTTTGAAGTTATGCAATCAGGAAGTTCAACGTCTCGA
CCATAACATTTATTCACAACGATGTAGAATTTTGTGATAATTGGCAACAA
GTTTTTAATAGTTTATTCAAACAGTGCATCCAGATAAAAAACAACGAATT
CAATGTATAAAAAATCAAGACAATACTGTTAACAGTTGTACCATCAATGT
GTGTATATATGACCTGATCTATTTATTCTTCTTTCATTTTTCTTCTTTTT
TTCTGAAATTTGTACATTTTTACACCTTATATTTATATATGCACCTTACA
TATATCATTATCTATACTATACATTATCTATACACGTTTTTTTTTATAAG
AACAAACTATATAAGAACATAAGGCTTCGAGGCCCAAAAAATTAAGAACA
TTCTAAGAACATTCTAAGGCTTTGGAGACTTAAAAACATGCATTTTCTTA
AGAAATCACATCAAAATGCTCAAAAAATGCTGAAAATAAGAACATTTTAG
GAACATTTTTAGGCTTCAAATCCAAAAAACTAAGAACATCCGAAGGCTTC
GAAAATTTTTGACGTTCTTATAAAAAAAAACGTGTATTTTATACCATTCA
AAATGGTTGTAAGATGGTGTAGCTATCTAATATAATAATGTAAATGTCTT
TACATGCAAATAAACAACGGGTCGATTCCGTGTAATATTCACGAAAAAAT
TCTTAAGTAAATGTTACCAGGATTAGTATATACCACCTTCGC Coding sequence (CDS) from alignment at sc0000670:120925..123016- >TCONS_00028218 ID=TCONS_00028218|Name=TCONS_00028218|organism=Clytia hemisphaerica|type=CDS|length=1254bp|location=Sequence derived from alignment at sc0000670:120925..123016- (Clytia hemisphaerica)
ATGCACCGCCTTCATATTTTGAAGTTATGCAATCAGGAAGTTCAACGTCT
CGACCATAAATGGATTGCATGAAACACTGTTGGAATGGCTGGGTTTGTGC
ATTCGGTTTTGTTTTCATTATTGTGGGTGGAGTTTTTTTGATAATTGGTA
ATGGTGAAATCAGTAACAAATATAGGACATATAAATACATGATAAATCCT
GAATGCATTGATGATCATTCAATCACTTGTCAATACCGTACACCAGATCA
CATTAAAGAAGACAAGCGCCGAGAAATTACGATCGGACTAATATTACTCG
TAATTGGGTCAATAATAGCAGTGGTAGATATAAGTTCTTGCGTCCTGCAG
TGTTTAAATGGAAACACCTCTTCCTCAGGTGATAGTGAAGTTGAATACCA
AGATCCTCTAACGCAGACCTCGTCTGTCAGGGAGGAGGAGAGTAACAATA
GGAGACTCTCTGGTGACTATGAATTGAACTTGATTTTCCCAGATCGCAGT
GATCAGCAACATAATTCTGTCTCTCCAAACCATCCTATGACTGTAAATCT
ACCACAGTCTAAAAGCAATCATTCGCCAGGATATCCAGTTAGATCTAGGA
ACGAAAACCAGGGACAACTTTTATCAGATGCACCGCCTTCATATTTTGAA
GTTATGCAATCAGGAAGTTCAACGTCTCGACCATAAATGGATTGCATGAA
ACACTGTTGGAATGGCTGGGTTTGTGCATTCGGTTTTGTTTTCATTATTG
TGGGTGGAGTTTTTTTGATAATTGGTAATGGTGAAATCAGTAACAAATAT
AGGACATATAAATACATGATAAATCCTGAATGCATTGATGATCATTCAAT
CACTTGTCAATACCGTACACCAGATCACATTAAAGAAGACAAGCGCCGAG
AAATTACGATCGGACTAATATTACTCGTAATTGGGTCAATAATAGCAGTG
GTAGATATAAGTTCTTGCGTCCTGCAGTGTTTAAATGGAAACACCTCTTC
CTCAGGTGATAGTGAAGTTGAATACCAAGATCCTCTAACGCAGACCTCGT
CTGTCAGGGAGGAGGAGAGTAACAATAGGAGACTCTCTGGTGACTATGAA
TTGAACTTGATTTTCCCAGATCGCAGTGATCAGCAACATAATTCTGTCTC
TCCAAACCATCCTATGACTGTAAATCTACCACAGTCTAAAAGCAATCATT
CGCCAGGATATCCAGTTAGATCTAGGAACGAAAACCAGGGACAACTTTTA
TCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028218-exon-sc0000670-1575043694:122373..123016 | TCONS_00028218-exon-sc0000670-1575043694:122373..123016 | Clytia hemisphaerica | exon |
| TCONS_00028218-exon-sc0000670-1575043694:120925..121669 | TCONS_00028218-exon-sc0000670-1575043694:120925..121669 | Clytia hemisphaerica | exon |
| TCONS_00028218-exon-sc0000670-1510915933:122373..123016 | TCONS_00028218-exon-sc0000670-1510915933:122373..123016 | Clytia hemisphaerica | exon |
| TCONS_00028218-exon-sc0000670-1510915933:120925..121669 | TCONS_00028218-exon-sc0000670-1510915933:120925..121669 | Clytia hemisphaerica | exon |
| TCONS_00028218-exon-sc0000670-1491911889:122373..123016 | TCONS_00028218-exon-sc0000670-1491911889:122373..123016 | Clytia hemisphaerica | exon |
| TCONS_00028218-exon-sc0000670-1491911889:120925..121669 | TCONS_00028218-exon-sc0000670-1491911889:120925..121669 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000670 | supercontig | sc0000670:120925..123016 - |
Blast
The following BLAST results are available for this feature:
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