TCONS_00028219 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028219
Unique NameTCONS_00028219
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2085

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028219 ID=TCONS_00028219|Name=TCONS_00028219|organism=Clytia hemisphaerica|type=transcript|length=2085bp
CAGTGAGGCATGAATTAAATTCAGTTCTTGTCTTGTGTGGAGCTTATTAA
TAAGATATGTTGATTTTTCTTGGATGCTTAAACTCTCATGTTTATAACTG
CTGTTGTTCTTAGTCATTGTACCTTTTATTAAATACTCTAAATCAACAAC
AAACATACTTTATTTTCTCCCAaagaacatcaaaatatttataaacaaaa
agaaacaactaaatttaaaaaaatgggtTACGAGAATCAGAGATGCTATA
CTACAATGTTTATCGGTGCAATTGTTTGCATTTTCATCGGTTTCATAATG
ACAAGTGTGGGCAGCACAGCTGAAGTATCTGTATTGAGAGTTTTTGGTCC
ATTCCTCTTGGTCACTGCTGTAGTAATGATTGCCACTGTTTGTATCATCC
GACGTAAGCAGCAACAAGCCATGATGATGATGGGCGGTAACGCTAGTTAC
CAAGCTACCGGAGGTGTCACCATTAACCAGACATCAAATGCTTCTTACCC
AGCACCGACCCAACCAGCAACGATTGGATACCCTCCGCAGCAGCCTGGTA
GCTACCCTCCACAGCAACCTGGTAGCTACCCACCACCACCTACCTATCCA
TCACCTGTAGGTGAACAGTATCCTCCACCTGCAGGACAACCATACCCACC
ACCAGCCGGTCAACAATACCCACCGCCGCCATTAGCAGCAGGCGGTACCC
AACCTTATCCTCCACCTGCAGGGCAGCCCTATCCACCACCTGCGGGGCAG
CCCTACCCACCACCACAAACAGCCTCCTATCCACCGCAAGGAGGCGTACC
TCTATCACAACAGGCTGCACCTCTTCCCGAGAAAACAGaTATGCCACCAC
CGCCATCTTATAACGAAGCTTTTTCACCTGACACTTCATCCGTGCCTCCA
TCGTAATTCGTCGCACGTTTCATAGAAAATGGCCTGTTACCGAGAATTCA
ATATAATTACATGGTTCAATAGAGTGTGGTAGTGAATTTATTGGCATGGA
ACTCTTTTGAGCACCAGTACCATCTTAgatcatgttcagacgttacagtT
TCGTATCGTCCCTGTATGGTTtccgttacggatcgagagtgttcatattg
gttttggAACGTTTCAGAGCAAGAAATCGGAGCAGTTtagttccgatgaa
aatagtggagcgaaaccgttccgatctgttttgctttgtgaCGTcttatt
ttttgacgtttcgaattttgaccttcacacttgtttcggaaccgtttcgt
ttcggaacgataAGGAGCCGTAACGTCTGAAAATGGTCTTAGTATTGTGA
GCCTTTGGCAGTTTTGATAATGTTGAAACTGTTTTCTATGTTTATTTCAt
gaagcattttttatttttcctcaAACTTCCCCAAAGTTTTTTAGGAACCT
TGAAATTTGGTGACAGTGTTTCGTTTATTTAATAAATGAAACTGCTCGAT
GAATGAGCGCAATAGGAATATAGGattcttcacaatttcataattccAAC
GTGAATAATTTATAGTGATTTAATGATTTAACCTAGTTTTCTATATGACT
CTGAATTTCAATTAGATTTAACTACTTTTTATATTCAAGCTCTAGTAGTA
TAGATAATTTATAGTTTTCTCACAATTTTATTTATATCTCTTAAATTAGA
ATGGAGAAATCTTTGTGACGTCTAGAATCGATTCTATCAGCCATTTTATA
TCTTCAAATTTACTTATGCTTATTACTCTGCTTAGGTTTgttatttttct
aagaaaatgttatatttatTGGAAGGGAAATATTCCATATTTTATACACT
AATTTTTGTAAAGATAACATTATTTTTCAACTGGTATTTATCAATCAAAC
AAGGTGAAACCATATTAAAAGAGTGCTCGATAAACCAACCAGGAGTAGAG
CTTCTTCAATCATCGACtgatatttattattttttacaaagaaaatatta
taataCACAAAGTAGTTGGATCTATCAAAAAATGACCTGGTCCCGATTAC
CGATTgtgttttctttaagaaataaataagaaatattaaaatattatcat
cagcatgaaaaatataattaattgattgattggct
Run BLAST on NCBI

protein sequence of TCONS_00028219-protein

>TCONS_00028219-protein ID=TCONS_00028219-protein|Name=TCONS_00028219-protein|organism=Clytia hemisphaerica|type=polypeptide|length=227bp
MGYENQRCYTTMFIGAIVCIFIGFIMTSVGSTAEVSVLRVFGPFLLVTAV
VMIATVCIIRRKQQQAMMMMGGNASYQATGGVTINQTSNASYPAPTQPAT
IGYPPQQPGSYPPQQPGSYPPPPTYPSPVGEQYPPPAGQPYPPPAGQQYP
PPPLAAGGTQPYPPPAGQPYPPPAGQPYPPPQTASYPPQGGVPLSQQAAP
LPEKTDMPPPPSYNEAFSPDTSSVPPS
Run BLAST on NCBI

transcript from alignment at sc0000670:123710..126222-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028219 ID=TCONS_00028219|Name=TCONS_00028219|organism=Clytia hemisphaerica|type=transcript|length=2513bp|location=Sequence derived from alignment at sc0000670:123710..126222- (Clytia hemisphaerica)
CAGTGAGGCATGAATTAAATTCAGTTCTTGTCTTGTGTGGAGCTTATTAA
TAAGATATGTTGATTTTTCTTGGATGCTTAAACTCTCATGTTTATAACTG
CTGTTGTTCTTAGTCATTGTACCTTTTATTAAATACTCTAAATCAACAAC
AAACATACTTTATTTTCTCCCAAAGAACATCAAAATATTTATAAACAAAA
AGAAACAACTAAATTTAAAAAAATGGGTTACGAGAATCAGAGATGCTATA
CTACAATGTTTATCGGTGCAATTGTTTGCATTTTCATCGGTTTCATAATG
ACAAGTGTGGGCAGCACAGCTGAAGTATCTGTATTGAGAGTTTTTGGTCC
ATTCCTCTTGGTCACTGCTGTAGTAATGATTGCCACTGTTTGTATCATCC
GACGTAAGCAGCAACAAGCCATGATGATGATGGGCGGTAACGCTAGTTAC
CAAGCTACCGGAGGTGTCACCATTAACCAGACATCAAATGCTTCTTACCC
AGCACCGACCCAACCAGCAACGATTGGATACCCTCCGCAGCAGCCTGGTA
GCTACCCTCCACAGCAACCTGGTAGCTACCCACCACCACCTACCTATCCA
TCACCTGTAGGTGAACAGTATCCTCCACCTGCAGGACAACCATACCCACC
ACCAGCCGGTCAACAATACCCACCGCCGCCATTAGCAGCAGGCGGTACCC
AACCTTATCCTCCACCTGCAGGGCAGCCCTATCCACCACCTGCGGGGCAG
CCCTACCCACCACCACAAACAGCCTCCTATCCACCGCAAGGAGGCGTACC
TCTATCACAACAGGCTGCACCTCTTCCCGAGAAAACAGGTATTTGAGATT
CGTTTCTGTCTTGTTTGGACAGTTTAGACAGAGTAAAACTGAGTAAAATT
TAATTTTGAATATTATTCAAAGTTTTCAGAGTTGATTACTCAAATTTTGC
CCCTATAGATTTGACTACAATCGATTTATAATTAGTTTCAGATAATATTT
CCTCTCTCATATCTTCATAACTGCTTTTCCTGTTCATAGTGCGAAACTTT
TCTTAGATTGACACTACTGGCTTAACCTAAACTTTTGGATAAAGCATAGT
CTAATGAAGTAATCGCGCCACCCAGTCTATCAAAGAGTCTTAGGACTGGA
CCCCGGGCTACTGAAAAGATGACGCGAGCAAGATTTTCTTAAATACAAAA
TCACATGTGGGTGTGAAGATGGTAAAGGCTAATATAATAATGATGACTTT
TTCTTCTTTCTTTTAGATATGCCACCACCGCCATCTTATAACGAAGCTTT
TTCACCTGACACTTCATCCGTGCCTCCATCGTAATTCGTCGCACGTTTCA
TAGAAAATGGCCTGTTACCGAGAATTCAATATAATTACATGGTTCAATAG
AGTGTGGTAGTGAATTTATTGGCATGGAACTCTTTTGAGCACCAGTACCA
TCTTAGATCATGTTCAGACGTTACAGTTTCGTATCGTCCCTGTATGGTTT
CCGTTACGGATCGAGAGTGTTCATATTGGTTTTGGAACGTTTCAGAGCAA
GAAATCGGAGCAGTTTAGTTCCGATGAAAATAGTGGAGCGAAACCGTTCC
GATCTGTTTTGCTTTGTGACGTCTTATTTTTTGACGTTTCGAATTTTGAC
CTTCACACTTGTTTCGGAACCGTTTCGTTTCGGAACGATAAGGAGCCGTA
ACGTCTGAAAATGGTCTTAGTATTGTGAGCCTTTGGCAGTTTTGATAATG
TTGAAACTGTTTTCTATGTTTATTTCATGAAGCATTTTTTATTTTTCCTC
AAACTTCCCCAAAGTTTTTTAGGAACCTTGAAATTTGGTGACAGTGTTTC
GTTTATTTAATAAATGAAACTGCTCGATGAATGAGCGCAATAGGAATATA
GGATTCTTCACAATTTCATAATTCCAACGTGAATAATTTATAGTGATTTA
ATGATTTAACCTAGTTTTCTATATGACTCTGAATTTCAATTAGATTTAAC
TACTTTTTATATTCAAGCTCTAGTAGTATAGATAATTTATAGTTTTCTCA
CAATTTTATTTATATCTCTTAAATTAGAATGGAGAAATCTTTGTGACGTC
TAGAATCGATTCTATCAGCCATTTTATATCTTCAAATTTACTTATGCTTA
TTACTCTGCTTAGGTTTGTTATTTTTCTAAGAAAATGTTATATTTATTGG
AAGGGAAATATTCCATATTTTATACACTAATTTTTGTAAAGATAACATTA
TTTTTCAACTGGTATTTATCAATCAAACAAGGTGAAACCATATTAAAAGA
GTGCTCGATAAACCAACCAGGAGTAGAGCTTCTTCAATCATCGACTGATA
TTTATTATTTTTTACAAAGAAAATATTATAATACACAAAGTAGTTGGATC
TATCAAAAAATGACCTGGTCCCGATTACCGATTGTGTTTTCTTTAAGAAA
TAAATAAGAAATATTAAAATATTATCATCAGCATGAAAAATATAATTAAT
TGATTGATTGGCT

Coding sequence (CDS) from alignment at sc0000670:123710..126222-

>TCONS_00028219 ID=TCONS_00028219|Name=TCONS_00028219|organism=Clytia hemisphaerica|type=CDS|length=1368bp|location=Sequence derived from alignment at sc0000670:123710..126222- (Clytia hemisphaerica)
ATATGCCACCACCGCCATCTTATAACGAAGCTTTTTCACCTGACACTTCA
TCCGTGCCTCCATCGTAAATGGGTTACGAGAATCAGAGATGCTATACTAC
AATGTTTATCGGTGCAATTGTTTGCATTTTCATCGGTTTCATAATGACAA
GTGTGGGCAGCACAGCTGAAGTATCTGTATTGAGAGTTTTTGGTCCATTC
CTCTTGGTCACTGCTGTAGTAATGATTGCCACTGTTTGTATCATCCGACG
TAAGCAGCAACAAGCCATGATGATGATGGGCGGTAACGCTAGTTACCAAG
CTACCGGAGGTGTCACCATTAACCAGACATCAAATGCTTCTTACCCAGCA
CCGACCCAACCAGCAACGATTGGATACCCTCCGCAGCAGCCTGGTAGCTA
CCCTCCACAGCAACCTGGTAGCTACCCACCACCACCTACCTATCCATCAC
CTGTAGGTGAACAGTATCCTCCACCTGCAGGACAACCATACCCACCACCA
GCCGGTCAACAATACCCACCGCCGCCATTAGCAGCAGGCGGTACCCAACC
TTATCCTCCACCTGCAGGGCAGCCCTATCCACCACCTGCGGGGCAGCCCT
ACCCACCACCACAAACAGCCTCCTATCCACCGCAAGGAGGCGTACCTCTA
TCACAACAGGCTGCACCTCTTCCCGAGAAAACAGATATGCCACCACCGCC
ATCTTATAACGAAGCTTTTTCACCTGACACTTCATCCGTGCCTCCATCGT
AAATGGGTTACGAGAATCAGAGATGCTATACTACAATGTTTATCGGTGCA
ATTGTTTGCATTTTCATCGGTTTCATAATGACAAGTGTGGGCAGCACAGC
TGAAGTATCTGTATTGAGAGTTTTTGGTCCATTCCTCTTGGTCACTGCTG
TAGTAATGATTGCCACTGTTTGTATCATCCGACGTAAGCAGCAACAAGCC
ATGATGATGATGGGCGGTAACGCTAGTTACCAAGCTACCGGAGGTGTCAC
CATTAACCAGACATCAAATGCTTCTTACCCAGCACCGACCCAACCAGCAA
CGATTGGATACCCTCCGCAGCAGCCTGGTAGCTACCCTCCACAGCAACCT
GGTAGCTACCCACCACCACCTACCTATCCATCACCTGTAGGTGAACAGTA
TCCTCCACCTGCAGGACAACCATACCCACCACCAGCCGGTCAACAATACC
CACCGCCGCCATTAGCAGCAGGCGGTACCCAACCTTATCCTCCACCTGCA
GGGCAGCCCTATCCACCACCTGCGGGGCAGCCCTACCCACCACCACAAAC
AGCCTCCTATCCACCGCAAGGAGGCGTACCTCTATCACAACAGGCTGCAC
CTCTTCCCGAGAAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015975XLOC_015975Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028219-proteinTCONS_00028219-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028219-exon-sc0000670-1575043694:125385..126222TCONS_00028219-exon-sc0000670-1575043694:125385..126222Clytia hemisphaericaexon
TCONS_00028219-exon-sc0000670-1575043694:123710..124956TCONS_00028219-exon-sc0000670-1575043694:123710..124956Clytia hemisphaericaexon
TCONS_00028219-exon-sc0000670-1510915933:125385..126222TCONS_00028219-exon-sc0000670-1510915933:125385..126222Clytia hemisphaericaexon
TCONS_00028219-exon-sc0000670-1510915933:123710..124956TCONS_00028219-exon-sc0000670-1510915933:123710..124956Clytia hemisphaericaexon
TCONS_00028219-exon-sc0000670-1491911889:125385..126222TCONS_00028219-exon-sc0000670-1491911889:125385..126222Clytia hemisphaericaexon
TCONS_00028219-exon-sc0000670-1491911889:123710..124956TCONS_00028219-exon-sc0000670-1491911889:123710..124956Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:123710..126222 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.4815	12.2268	5.86701	5.80044	37.464	28.6372	44.9801	46.9581	16.255	27.3196	15.5194	10.8694	10.8226	8.47705	1.84702	2.24719	17.7175	18.4218	12.8862	14.8308	25.7244	23.0099	18.496	19.9302	15.7561	14.0801	16.0255	13.7266	8.64754	8.85366
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028219 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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