|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028224 ID=TCONS_00028224|Name=TCONS_00028224|organism=Clytia hemisphaerica|type=transcript|length=1848bp
AGTAGGAATTTGAATTCGAAGGGTGCTTGGTTCACTTTTAAGAGGATCTT
TTTGGCAGGAGTGAGTTTTAAATCGGGAAAACAAGTCATTAGAAAATCAA
GTGTAAGaattaaaataaattataaCAATTCTCATTTTTAGGCCAGTAAT
ACTTACAATAAATCTCAATGCCTGATAATAACATAAATATAATTCCCGTG
CTGTTAAAAATCTATTGAAAATGATAGTGCGGCTCGGCAGTTTCTctaac
aaacaaaaacaataatTATTTGATATCCTGCCGCCAAAAATTATACTTTA
TTTTGATACATTGTCTTATACTTTCTATATAGATCGCTTTAAGGTTTGAT
CTGAATACCGAGAGTTAAACTAGTTAAATTTCAAAGATCAGAAGTTTAAT
GTTGAATGTGAAATGCCATATTAATTAAAACCGCTTGAAAGAAAGTTTGA
CGGATTCCAAAACCTTTTTCATCGAGCACCAATTGGGTTCGAAATTAATT
TCAGTTGATTCTAGCCTATTCTAGACGTCaaccgcgttttttctacgcaa
ttaatgTCTATCCACTTTGcaactttttcgaatttttggagCCCAAGTTT
TGAAGTTCTTGCAGTAGGGAAAAATACGGAAAGATAATAACAATATACGG
AAAGATTCGAATCAAAGAAAGCATTTTTATAAAGATTTCTCCTTGACAGG
GACTGAGAATTAGTTCGGCATAACGGCAAAAGTAACTTTAAACGTTTTTA
AGAACACAAAAGAGTCTCAAATTAGATTAGAATCTATCGCTtcagagaaa
gattcgaattacgtGGAATATATTTTGTTTAGCCgaaaaaaacaagattt
tagttcaaaatatagaaaaagtAGATATTCGAATTAGCGAGGTTTGCCTG
TAAAAATGAATCATATATCTAAAGGGTGTCACCTCTGTCATGAGTCTTTT
ATAATATCACATTTAGTCAAACTATGTAAAAGCAAGGTTTAGCATGAAAC
TATTTAGGACGCAAAATTTATTACAGGCTTGTACTCGTTGGTAAAAAATT
TCCGTAGTTCCTTTCCAAAATCTACGACGTGAGTTACAGTAATTTAACGT
CATGAATTTCGTGCCATTTTGCACGCAGCCTTTACTAGATGTCACCGCTT
TTCTTCTACGCAGTAACGTCTATTTAAATTTGCGACTTTCTCTAATGTca
cttttttaactttagagCTCTTTTAGTAgtgaaaaaatagatttttcgtc
gcaaaacacttgaaaggcaaTTTTTTCGATAGTCATTAAAGTGTAGCCCA
CCAAGAAATGGAACGAAAAATCCCGGTTTGTGGTGATGTGCTCACTAGTA
ACTTTGCAGAGAACCCGCGAAAAACTCACATCATAGATTAAGAACGGCAT
AAATAGCTTCAGTCCTAACCTTGGCTTGGCTTGCATTTtaatatattatt
tattttcaaacatcaaaCACCAGTATTTGCAATAATCATACACGATTCTG
GTTTGCCAAGTGAACTTGATTTCGTGATGGAAGACGAGAAATTGGATGAT
CGATCATGATTGTTTCCAGACTTTCGAAGACCCAAAAATTTGCGTGTTTC
TTTCCTGAACAGAGAACACGTAAAACAATAGAAGATCCAGTTGATAGAAG
AATTGATGATAACACCAAGCTTTGCGAAAGCGAATGATTTATCAACTGTT
GNGCCCAAAAATTTGCGTGTTTCTTTCCTGAACAGAGAACACGTAAAACA
ATAGAAGATCCAGTTGATAGAAGAATTGATGATAACACCAAGCTTGGCGA
AAGCGAATGATTTATCAACTGTTGTCCATATGTTTTGGTTTGCGTGAC Run BLAST on NCBI protein sequence of TCONS_00028224-protein >TCONS_00028224-protein ID=TCONS_00028224-protein|Name=TCONS_00028224-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
HANQNIWTTVDKSFAFAKLGVIINSSINWIFYCFTCSLFRKETRKFLGXT
VDKSFAFAKLGVIINSSINWIFYCFTCSLFRKETRKFLGLRKSGNNHDRS
SNFSSSITKSSSLGKPESCMIIANTGV Run BLAST on NCBI transcript from alignment at sc0000670:1..1848 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028224 ID=TCONS_00028224|Name=TCONS_00028224|organism=Clytia hemisphaerica|type=transcript|length=1848bp|location=Sequence derived from alignment at sc0000670:1..1848 (Clytia hemisphaerica)
GTCACGCAAACCAAAACATATGGACAACAGTTGATAAATCATTCGCTTTC
GCCAAGCTTGGTGTTATCATCAATTCTTCTATCAACTGGATCTTCTATTG
TTTTACGTGTTCTCTGTTCAGGAAAGAAACACGCAAATTTTTGGGCNCAA
CAGTTGATAAATCATTCGCTTTCGCAAAGCTTGGTGTTATCATCAATTCT
TCTATCAACTGGATCTTCTATTGTTTTACGTGTTCTCTGTTCAGGAAAGA
AACACGCAAATTTTTGGGTCTTCGAAAGTCTGGAAACAATCATGATCGAT
CATCCAATTTCTCGTCTTCCATCACGAAATCAAGTTCACTTGGCAAACCA
GAATCGTGTATGATTATTGCAAATACTGGTGtttgatgtttgaaaataaa
taatatattaAAATGCAAGCCAAGCCAAGGTTAGGACTGAAGCTATTTAT
GCCGTTCTTAATCTATGATGTGAGTTTTTCGCGGGTTCTCTGCAAAGTTA
CTAGTGAGCACATCACCACAAACCGGGATTTTTCGTTCCATTTCTTGGTG
GGCTACACTTTAATGACTATCGAAAAAAttgcctttcaagtgttttgcga
cgaaaaatctattttttcacTACTAAAAGAGctctaaagttaaaaaagtg
ACATTAGAGAAAGTCGCAAATTTAAATAGACGTTACTGCGTAGAAGAAAA
GCGGTGACATCTAGTAAAGGCTGCGTGCAAAATGGCACGAAATTCATGAC
GTTAAATTACTGTAACTCACGTCGTAGATTTTGGAAAGGAACTACGGAAA
TTTTTTACCAACGAGTACAAGCCTGTAATAAATTTTGCGTCCTAAATAGT
TTCATGCTAAACCTTGCTTTTACATAGTTTGACTAAATGTGATATTATAA
AAGACTCATGACAGAGGTGACACCCTTTAGATATATGATTCATTTTTACA
GGCAAACCTCGCTAATTCGAATATCTactttttctatattttgaactaaa
atcttgtttttttcGGCTAAACAAAATATATTCCacgtaattcgaatctt
tctctgaAGCGATAGATTCTAATCTAATTTGAGACTCTTTTGTGTTCTTA
AAAACGTTTAAAGTTACTTTTGCCGTTATGCCGAACTAATTCTCAGTCCC
TGTCAAGGAGAAATCTTTATAAAAATGCTTTCTTTGATTCGAATCTTTCC
GTATATTGTTATTATCTTTCCGTATTTTTCCCTACTGCAAGAACTTCAAA
ACTTGGGctccaaaaattcgaaaaagttgCAAAGTGGATAGAcattaatt
gcgtagaaaaaacgcggttGACGTCTAGAATAGGCTAGAATCAACTGAAA
TTAATTTCGAACCCAATTGGTGCTCGATGAAAAAGGTTTTGGAATCCGTC
AAACTTTCTTTCAAGCGGTTTTAATTAATATGGCATTTCACATTCAACAT
TAAACTTCTGATCTTTGAAATTTAACTAGTTTAACTCTCGGTATTCAGAT
CAAACCTTAAAGCGATCTATATAGAAAGTATAAGACAATGTATCAAAATA
AAGTATAATTTTTGGCGGCAGGATATCAAATAattattgtttttgtttgt
tagAGAAACTGCCGAGCCGCACTATCATTTTCAATAGATTTTTAACAGCA
CGGGAATTATATTTATGTTATTATCAGGCATTGAGATTTATTGTAAGTAT
TACTGGCCTAAAAATGAGAATTGttataatttattttaattCTTACACTT
GATTTTCTAATGACTTGTTTTCCCGATTTAAAACTCACTCCTGCCAAAAA
GATCCTCTTAAAAGTGAACCAAGCACCCTTCGAATTCAAATTCCTACT Coding sequence (CDS) from alignment at sc0000670:1..1848 >TCONS_00028224 ID=TCONS_00028224|Name=TCONS_00028224|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0000670:1..1848 (Clytia hemisphaerica)
CACGCAAACCAAAACATATGGACAACAGTTGATAAATCATTCGCTTTCGC
CAAGCTTGGTGTTATCATCAATTCTTCTATCAACTGGATCTTCTATTGTT
TTACGTGTTCTCTGTTCAGGAAAGAAACACGCAAATTTTTGGGCNCAACA
GTTGATAAATCATTCGCTTTCGCAAAGCTTGGTGTTATCATCAATTCTTC
TATCAACTGGATCTTCTATTGTTTTACGTGTTCTCTGTTCAGGAAAGAAA
CACGCAAATTTTTGGGTCTTCGAAAGTCTGGAAACAATCATGATCGATCA
TCCAATTTCTCGTCTTCCATCACGAAATCAAGTTCACTTGGCAAACCAGA
ATCGTGTATGATTATTGCAAATACTGGTGtttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028224-exon-sc0000670-1491911889:1..1848 | TCONS_00028224-exon-sc0000670-1491911889:1..1848 | Clytia hemisphaerica | exon |
| TCONS_00028224-exon-sc0000670-1510915933:1..1848 | TCONS_00028224-exon-sc0000670-1510915933:1..1848 | Clytia hemisphaerica | exon |
| TCONS_00028224-exon-sc0000670-1575043694:1..1848 | TCONS_00028224-exon-sc0000670-1575043694:1..1848 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000670 | supercontig | sc0000670:1..1848 . |
Blast
The following BLAST results are available for this feature:
|
