TCONS_00028226 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028226
Unique NameTCONS_00028226
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length465

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028226 ID=TCONS_00028226|Name=TCONS_00028226|organism=Clytia hemisphaerica|type=transcript|length=465bp
ataaaaacaaacttcacaAAATGGCTGCCGTTCTATGGTAGCGGAAGGAG
ACCTGTTGTAAAAGTGCAATGTTTTGTgataattttatgattttgaagcT
CCAAGAAGACATAAGCACCTCGTAAATTACGTCATAGAAATCTGGCAAAT
GTTTTTAAGCATCGATCAATCGTTTTCAGGTAAAAAAAACCCTctagaat
gtttttttttcaaagaaaacctTCATCTTTTTCTGACAGTCTTTACACAC
ACTTTTTAACTTTTCGTTCGCGTTGCTTTGTTTACCTCAGCGCGCCccat
ttttaaagggacatttttGCTAATTATTAGTAATTTATGACATAAATTTG
AGCAAAATTCGTGCGTTCTGATTGGCCAGTTTTCAAACGGTTTTTTCTGG
tggcaaattcaaaatctccaatTCTACCATACTAATTTTTATCTCATGTG
AGCTTTGTGAAATGG
Run BLAST on NCBI

transcript from alignment at sc0000670:35677..36141

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028226 ID=TCONS_00028226|Name=TCONS_00028226|organism=Clytia hemisphaerica|type=transcript|length=465bp|location=Sequence derived from alignment at sc0000670:35677..36141 (Clytia hemisphaerica)
CCATTTCACAAAGCTCACATGAGATAAAAATTAGTATGGTAGAattggag
attttgaatttgccaCCAGAAAAAACCGTTTGAAAACTGGCCAATCAGAA
CGCACGAATTTTGCTCAAATTTATGTCATAAATTACTAATAATTAGCaaa
aatgtccctttaaaaatggGGCGCGCTGAGGTAAACAAAGCAACGCGAAC
GAAAAGTTAAAAAGTGTGTGTAAAGACTGTCAGAAAAAGATGAaggtttt
ctttgaaaaaaaaacattctagAGGGTTTTTTTTACCTGAAAACGATTGA
TCGATGCTTAAAAACATTTGCCAGATTTCTATGACGTAATTTACGAGGTG
CTTATGTCTTCTTGGAgcttcaaaatcataaaattatcACAAAACATTGC
ACTTTTACAACAGGTCTCCTTCCGCTACCATAGAACGGCAGCCATTTtgt
gaagtttgtttttat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015980XLOC_015980Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028226-exon-sc0000670-1491911889:35677..36141TCONS_00028226-exon-sc0000670-1491911889:35677..36141Clytia hemisphaericaexon
TCONS_00028226-exon-sc0000670-1510915933:35677..36141TCONS_00028226-exon-sc0000670-1510915933:35677..36141Clytia hemisphaericaexon
TCONS_00028226-exon-sc0000670-1575043694:35677..36141TCONS_00028226-exon-sc0000670-1575043694:35677..36141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000670supercontigsc0000670:35677..36141 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.161396	0	0.189572	0.443048	1.44493	0.667213	0.934263	0.867927	0.290916	1.10756	1.67105	2.40938	1.03345	1.01951	2.08897	1.59949	2.69143	1.01293	2.5689	2.59444	0.159639	0.145034	1.04155	1.06235	0.382861	0.618047	0.314087	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028226 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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