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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028227 ID=TCONS_00028227|Name=TCONS_00028227|organism=Clytia hemisphaerica|type=transcript|length=2211bp
TTCTGAACTCGATAGTAGACGGGTagttttgaacaaaaatttctACGATA
TTTTGTAGAAACGCTTCTGATTGGCCGATGATGTCTATTGTTTTCCCGAA
AAATTTATgcgacaaaatcaaaacaaacaaaatggcggctCTGATAGAGG
TGATTGCagacaatataataaaattgGTGAATAAAGATTTTGAGGTGAAA
TGCAAACAGTTGGAAGCCATGAAAAGCATTATCGAAGGCAAAGATACGTT
AGCCATCCTTCCAACCTCCTATGGAAAGAGCCTAATCTTTCAGATGTTAC
CTGCTGTGTGTAAAAAGCTGCCCTCCAAACCTGATAATGGGATTGTGCTT
GTAATATCACCACTTCAAGCTTTGATAGCAGATCAAGTCAAATCTGCAAA
CAAATTGAAAGATCCACTTGGCCTTAATGCTTGTTCCTTGTCATCTTCAA
GCAAAATGGATAAAattttatctggagaatttaaTATTATAGTTGACTCT
CCAGAACTATGGATGGGGGACCCAAAAACAAGGAAAGCTATGTTATCATC
ACCAGTTTTCACAAAGAACTTAATCTGCATTGTGGTTGATGAAGCCCATA
AAGTTTCATGGGGCGTTTCAAATGACGGAGAAAAACCATTTCGTGAGATG
TTTGGCAGAATTGGGGAGATGCGTTCATTTGTTAAAGAAAATGTGCCAGT
TTTATGCTTAAGTGCAACTGTTGATAAAAATTACACAGAACTTATCAAGA
GTGTGTGCTCATTATCAAAAACTGTGAAAATTATCCATTCTTGTAGTGAC
CGCccaaatatttttctcattgTTAAAGacattaaaagaaagaaaattga
ttgttttgattggctGTTTAGTcttatttgtgaaaaaaataCTGAATGTc
ctaaagttttgatttattgcCGAACACAACAACTTGCTGGTTGgcttttc
aaatcttttttattgGAATTGGGAGTTAATatgtataaaaacaaaattat
ggaTCAAGATAATGCTATCGTGGCCCTTTTTCACGCTGACACGTTGCCTT
ATATAAAGGAGAAAGTTTTATTAATGCTGACATCAGATGAATGTGATTCA
AATATTCGTATTGTTATATGTACAAGTGCTCTTGGTTGTGGTGTTAACTG
TAGAAACATTCTTTACGTTTGTCATTTTGGAACATCCCATAATTTGGTTG
AATATAACCAGCAAATTGGACGAGCTGGTAGAGGTATTGATTCGCAAAGT
TATGCAATACTCTATAAATACCCACAAGCTGTAAAAGAAGTTTCATCTGA
CATTAAAAATTATGTTGATTCAAAGAATTGTTTGCGTTCATGTCTTTTTG
CACCTTTTAATTCCAACAATGAACCGATTAACCCTTTAACACCTCTCCAT
AGCTGTTGCAGTAATTGCTCACATTTTTGCAAATGTGGCAGTTGCCCACC
AAATATATTTGATAGTGCTTTACAGCAACAAGAGCAAGTTACTGAGAACG
AAGAAGTAAGATCTGTGACTATTGATGACAAAATCTCTATTAAAGCTTAC
TTGCAAAGCTATCACAGCCAACAGTGTTCCTCTCAACAATTATTTATTCC
TTCTGGAATATTTAGTGGGCTAACTAGTGACACTATAAATAAAGTTGTGG
ACAATTTACCCTACATTAACAGCCCAGCATATTTGGTAGAAAACTTAGAC
CTATCAGCAAACTCTGCTGCAAACATATTCAAAATGATACAAGAGCACTT
TGAGGAGGACATTACAGTGAATGAGCCACCACTTAGGAAgagaaaattaa
cttttttagaAGAGGAGCGCTATGAATTTTCCGATGACACTTCTGATGAC
TCTTCAGATactgaaaatgatgatgaagaGCACATTTAACTTatgaattt
tttattgaaaaagtttttagtttttatagaaatattttgtcttttgatat
tttgtcttttgatattttttatagattttagcACATGCACACTGGCTTGA
TATTAcaccattttttattttataaaatttttttgtccTTTGATATTTTT
AGTAGATTTTAGCACAAATTTCATATTACACTATTTTTGTTCATTAAGTA
GCATACACTGGAATATTAGGCAGGAGGCTCTaaatttttgccctttttgt
aTGATATTAGAGTTTTTATGATTATGGgacattttcttcattttttggta
tttaatCGAGc Run BLAST on NCBI protein sequence of TCONS_00028227-protein >TCONS_00028227-protein ID=TCONS_00028227-protein|Name=TCONS_00028227-protein|organism=Clytia hemisphaerica|type=polypeptide|length=603bp
MMSIVFPKNLCDKIKTNKMAALIEVIADNIIKLVNKDFEVKCKQLEAMKS
IIEGKDTLAILPTSYGKSLIFQMLPAVCKKLPSKPDNGIVLVISPLQALI
ADQVKSANKLKDPLGLNACSLSSSSKMDKILSGEFNIIVDSPELWMGDPK
TRKAMLSSPVFTKNLICIVVDEAHKVSWGVSNDGEKPFREMFGRIGEMRS
FVKENVPVLCLSATVDKNYTELIKSVCSLSKTVKIIHSCSDRPNIFLIVK
DIKRKKIDCFDWLFSLICEKNTECPKVLIYCRTQQLAGWLFKSFLLELGV
NMYKNKIMDQDNAIVALFHADTLPYIKEKVLLMLTSDECDSNIRIVICTS
ALGCGVNCRNILYVCHFGTSHNLVEYNQQIGRAGRGIDSQSYAILYKYPQ
AVKEVSSDIKNYVDSKNCLRSCLFAPFNSNNEPINPLTPLHSCCSNCSHF
CKCGSCPPNIFDSALQQQEQVTENEEVRSVTIDDKISIKAYLQSYHSQQC
SSQQLFIPSGIFSGLTSDTINKVVDNLPYINSPAYLVENLDLSANSAANI
FKMIQEHFEEDITVNEPPLRKRKLTFLEEERYEFSDDTSDDSSDTENDDE
EHI Run BLAST on NCBI transcript from alignment at sc0000670:42922..45132 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028227 ID=TCONS_00028227|Name=TCONS_00028227|organism=Clytia hemisphaerica|type=transcript|length=2211bp|location=Sequence derived from alignment at sc0000670:42922..45132 (Clytia hemisphaerica)
gCTCGattaaataccaaaaaatgaagaaaatgtcCCATAATCATAAAAAC
TCTAATATCAtacaaaaagggcaaaaatttAGAGCCTCCTGCCTAATATT
CCAGTGTATGCTACTTAATGAACAAAAATAGTGTAATATGAAATTTGTGC
TAAAATCTACTAAAAATATCAAAggacaaaaaaattttataaaataaaaa
atggtgTAATATCAAGCCAGTGTGCATGTgctaaaatctataaaaaatat
caaaagacaaaatatcaaaagacaaaatatttctataaaaactaaaaact
ttttcaataaaaaattcatAAGTTAAATGTGCtcttcatcatcattttca
gtATCTGAAGAGTCATCAGAAGTGTCATCGGAAAATTCATAGCGCTCCTC
TtctaaaaaagttaattttctcTTCCTAAGTGGTGGCTCATTCACTGTAA
TGTCCTCCTCAAAGTGCTCTTGTATCATTTTGAATATGTTTGCAGCAGAG
TTTGCTGATAGGTCTAAGTTTTCTACCAAATATGCTGGGCTGTTAATGTA
GGGTAAATTGTCCACAACTTTATTTATAGTGTCACTAGTTAGCCCACTAA
ATATTCCAGAAGGAATAAATAATTGTTGAGAGGAACACTGTTGGCTGTGA
TAGCTTTGCAAGTAAGCTTTAATAGAGATTTTGTCATCAATAGTCACAGA
TCTTACTTCTTCGTTCTCAGTAACTTGCTCTTGTTGCTGTAAAGCACTAT
CAAATATATTTGGTGGGCAACTGCCACATTTGCAAAAATGTGAGCAATTA
CTGCAACAGCTATGGAGAGGTGTTAAAGGGTTAATCGGTTCATTGTTGGA
ATTAAAAGGTGCAAAAAGACATGAACGCAAACAATTCTTTGAATCAACAT
AATTTTTAATGTCAGATGAAACTTCTTTTACAGCTTGTGGGTATTTATAG
AGTATTGCATAACTTTGCGAATCAATACCTCTACCAGCTCGTCCAATTTG
CTGGTTATATTCAACCAAATTATGGGATGTTCCAAAATGACAAACGTAAA
GAATGTTTCTACAGTTAACACCACAACCAAGAGCACTTGTACATATAACA
ATACGAATATTTGAATCACATTCATCTGATGTCAGCATTAATAAAACTTT
CTCCTTTATATAAGGCAACGTGTCAGCGTGAAAAAGGGCCACGATAGCAT
TATCTTGAtccataattttgtttttatacatATTAACTCCCAATTCcaat
aaaaaagatttgaaaagcCAACCAGCAAGTTGTTGTGTTCGgcaataaat
caaaactttaggACATTCAGtatttttttcacaaataagACTAAACagcc
aatcaaaacaatcaattttctttcttttaatgtCTTTAAcaatgagaaaa
atatttggGCGGTCACTACAAGAATGGATAATTTTCACAGTTTTTGATAA
TGAGCACACACTCTTGATAAGTTCTGTGTAATTTTTATCAACAGTTGCAC
TTAAGCATAAAACTGGCACATTTTCTTTAACAAATGAACGCATCTCCCCA
ATTCTGCCAAACATCTCACGAAATGGTTTTTCTCCGTCATTTGAAACGCC
CCATGAAACTTTATGGGCTTCATCAACCACAATGCAGATTAAGTTCTTTG
TGAAAACTGGTGATGATAACATAGCTTTCCTTGTTTTTGGGTCCCCCATC
CATAGTTCTGGAGAGTCAACTATAATAttaaattctccagataaaatTTT
ATCCATTTTGCTTGAAGATGACAAGGAACAAGCATTAAGGCCAAGTGGAT
CTTTCAATTTGTTTGCAGATTTGACTTGATCTGCTATCAAAGCTTGAAGT
GGTGATATTACAAGCACAATCCCATTATCAGGTTTGGAGGGCAGCTTTTT
ACACACAGCAGGTAACATCTGAAAGATTAGGCTCTTTCCATAGGAGGTTG
GAAGGATGGCTAACGTATCTTTGCCTTCGATAATGCTTTTCATGGCTTCC
AACTGTTTGCATTTCACCTCAAAATCTTTATTCACcaattttattatatt
gtctGCAATCACCTCTATCAGagccgccattttgtttgttttgattttgt
cgcATAAATTTTTCGGGAAAACAATAGACATCATCGGCCAATCAGAAGCG
TTTCTACAAAATATCGTagaaatttttgttcaaaactACCCGTCTACTAT
CGAGTTCAGAA Coding sequence (CDS) from alignment at sc0000670:42922..45132 >TCONS_00028227 ID=TCONS_00028227|Name=TCONS_00028227|organism=Clytia hemisphaerica|type=CDS|length=1812bp|location=Sequence derived from alignment at sc0000670:42922..45132 (Clytia hemisphaerica)
TTAAATGTGCtcttcatcatcattttcagtATCTGAAGAGTCATCAGAAG
TGTCATCGGAAAATTCATAGCGCTCCTCTtctaaaaaagttaattttctc
TTCCTAAGTGGTGGCTCATTCACTGTAATGTCCTCCTCAAAGTGCTCTTG
TATCATTTTGAATATGTTTGCAGCAGAGTTTGCTGATAGGTCTAAGTTTT
CTACCAAATATGCTGGGCTGTTAATGTAGGGTAAATTGTCCACAACTTTA
TTTATAGTGTCACTAGTTAGCCCACTAAATATTCCAGAAGGAATAAATAA
TTGTTGAGAGGAACACTGTTGGCTGTGATAGCTTTGCAAGTAAGCTTTAA
TAGAGATTTTGTCATCAATAGTCACAGATCTTACTTCTTCGTTCTCAGTA
ACTTGCTCTTGTTGCTGTAAAGCACTATCAAATATATTTGGTGGGCAACT
GCCACATTTGCAAAAATGTGAGCAATTACTGCAACAGCTATGGAGAGGTG
TTAAAGGGTTAATCGGTTCATTGTTGGAATTAAAAGGTGCAAAAAGACAT
GAACGCAAACAATTCTTTGAATCAACATAATTTTTAATGTCAGATGAAAC
TTCTTTTACAGCTTGTGGGTATTTATAGAGTATTGCATAACTTTGCGAAT
CAATACCTCTACCAGCTCGTCCAATTTGCTGGTTATATTCAACCAAATTA
TGGGATGTTCCAAAATGACAAACGTAAAGAATGTTTCTACAGTTAACACC
ACAACCAAGAGCACTTGTACATATAACAATACGAATATTTGAATCACATT
CATCTGATGTCAGCATTAATAAAACTTTCTCCTTTATATAAGGCAACGTG
TCAGCGTGAAAAAGGGCCACGATAGCATTATCTTGAtccataattttgtt
tttatacatATTAACTCCCAATTCcaataaaaaagatttgaaaagcCAAC
CAGCAAGTTGTTGTGTTCGgcaataaatcaaaactttaggACATTCAGta
tttttttcacaaataagACTAAACagccaatcaaaacaatcaattttctt
tcttttaatgtCTTTAAcaatgagaaaaatatttggGCGGTCACTACAAG
AATGGATAATTTTCACAGTTTTTGATAATGAGCACACACTCTTGATAAGT
TCTGTGTAATTTTTATCAACAGTTGCACTTAAGCATAAAACTGGCACATT
TTCTTTAACAAATGAACGCATCTCCCCAATTCTGCCAAACATCTCACGAA
ATGGTTTTTCTCCGTCATTTGAAACGCCCCATGAAACTTTATGGGCTTCA
TCAACCACAATGCAGATTAAGTTCTTTGTGAAAACTGGTGATGATAACAT
AGCTTTCCTTGTTTTTGGGTCCCCCATCCATAGTTCTGGAGAGTCAACTA
TAATAttaaattctccagataaaatTTTATCCATTTTGCTTGAAGATGAC
AAGGAACAAGCATTAAGGCCAAGTGGATCTTTCAATTTGTTTGCAGATTT
GACTTGATCTGCTATCAAAGCTTGAAGTGGTGATATTACAAGCACAATCC
CATTATCAGGTTTGGAGGGCAGCTTTTTACACACAGCAGGTAACATCTGA
AAGATTAGGCTCTTTCCATAGGAGGTTGGAAGGATGGCTAACGTATCTTT
GCCTTCGATAATGCTTTTCATGGCTTCCAACTGTTTGCATTTCACCTCAA
AATCTTTATTCACcaattttattatattgtctGCAATCACCTCTATCAGa
gccgccattttgtttgttttgattttgtcgcATAAATTTTTCGGGAAAAC
AATAGACATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028227-exon-sc0000670-1491911889:42922..45132 | TCONS_00028227-exon-sc0000670-1491911889:42922..45132 | Clytia hemisphaerica | exon |
| TCONS_00028227-exon-sc0000670-1510915933:42922..45132 | TCONS_00028227-exon-sc0000670-1510915933:42922..45132 | Clytia hemisphaerica | exon |
| TCONS_00028227-exon-sc0000670-1575043694:42922..45132 | TCONS_00028227-exon-sc0000670-1575043694:42922..45132 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000670 | supercontig | sc0000670:42922..45132 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005524 |
ATP binding |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00028227 vs. Swiss-Prot (Human)
Match: WRN (Werner syndrome ATP-dependent helicase OS=Homo sapiens GN=WRN PE=1 SV=2) HSP 1 Score: 111.309 bits (277), Expect = 7.169e-25 Identity = 122/442 (27.60%), Postives = 189/442 (42.76%), Query Frame = 3
Query: 207 QLEAMKSIIEGK-DTLAILPTSYGKSLIFQMLPAVCKKLPSKPDNGIVLVISPLQALIADQVKSANKLKDPLGLNACSLSSSSK---MDKILSGEFNIIVDSPELWMGDPKTRKAMLSSPVFTKNLICIVVDEAHKVS-WGVSNDGEKPFREMFGRIGEMRSFVKENVPVLCLSATVDKNYTELIKSVCSLSKTVKIIHSCSDRPNIFLIVKDIKRKKIDCFDWLFSLICEKNT----ECPKVLIYC----RTQQLAGWLFKSFLLELGVNMYKNKIMDQDNAIVALFHADTLPYIKEKVLLMLTSDECDSNIRIVICTSALGCGVNCRNILYVCHFGTSHNLVEYNQQIGRAGR-GIDSQSYAI----------------------LYKYPQAVKEVSSDIKNYVDSKNCLRSCLFAPFNSNNEPINPLTPLHS--CCSNC 1418
Q + + S++E + D +A++ T YGKSL FQ P K I LVISPL +L+ DQV P AC L S+ + I G++ I+ +PE G+ +L + I VDEAH +S WG FR+ F ++G +++ + VP++ L+AT + E I +L + +I + DRPN++L +++RK + L + + ++ E P +IYC TQQ+ G L K L L Y HA ++ + DE I+ VI T A G G+N +I V H+G ++ Y Q+IGRAGR G+ S + + LYK K ++ Y+ S C R + + F L + + CC NC
Sbjct: 553 QWKVIHSVLEERRDNVAVMATGYGKSLCFQYPPVYVGK--------IGLVISPLISLMEDQVLQLKMSNIP----ACFLGSAQSENVLTDIKLGKYRIVYVTPEYCSGN----MGLLQQLEADIGITLIAVDEAHCISEWG------HDFRDSFRKLGSLKTALP-MVPIVALTATASSSIREDIVRCLNL-RNPQITCTGFDRPNLYL---EVRRKTGNILQDLQPFLVKTSSHWEFEGP-TIIYCPSRKMTQQVTGELRK---LNLSCGTY---------------HAGMSFSTRKDIHHRFVRDE----IQCVIATIAFGMGINKADIRQVIHYGAPKDMESYYQEIGRAGRDGLQSSCHVLWAPADINLNRHLLTEIRNEKFRLYKLKMMAK-----MEKYLHSSRCRRQIILSHFEDKQVQKASLGIMGTEKCCDNC 939
The following BLAST results are available for this feature:
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