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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028239 ID=TCONS_00028239|Name=TCONS_00028239|organism=Clytia hemisphaerica|type=transcript|length=400bp
TAGATGTTTTGAACGTAGCAAAGAAAAGATACCCACACTTATGTTCGCAC
TTCAACAAGATGGAAAAGTTACTGCTCGGCGTCCAAGCTGATTCTGAAAA
CGTGGTCATATCGCACGAAGATTTCACCTTCCTCGCACAAAAAGCGGACG
AAAAACAGACCTTTTTACCGCCCACCGCCCAAGTAGCCGCCCAGGAGGGT
TCGTTCAAGGGTTGGTCGGCTATGTGGCTATGGCGTGGCGCGTACGCAAG
TGAATGCGTTAGTCTGCGTATGCGTACTCTTGTGTTGTTTGATTGGATAA
AATCGTTCTTGTTTGGTCGTGATACATCGAGAATCTGAATCCTCTATAAT
GAACAATTAGATGCAAATTGTTTTCAATCCAATTCAATTCGATGTTGTTG Run BLAST on NCBI protein sequence of TCONS_00028239-protein >TCONS_00028239-protein ID=TCONS_00028239-protein|Name=TCONS_00028239-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
DVLNVAKKRYPHLCSHFNKMEKLLLGVQADSENVVISHEDFTFLAQKADE
KQTFLPPTAQVAAQEGSFKGWSAMWLWRGAYASECVSLRMRTLVLFDWIK
SFLFGRDTSRI Run BLAST on NCBI transcript from alignment at sc0000671:120948..121968+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028239 ID=TCONS_00028239|Name=TCONS_00028239|organism=Clytia hemisphaerica|type=transcript|length=1021bp|location=Sequence derived from alignment at sc0000671:120948..121968+ (Clytia hemisphaerica)
TAGATGTTTTGAACGTAGCAAAGAAAAGATACCCACACTTATGTTCGCAC
TTCAACAAGATGGAAAAGTAGGGACTTTTGGCTTAATTTTCACTCTGCTA
AAACTTAATCGGATTAACTTGAGGAAGCATTTTTACTTTACACTCAACAG
AGAGAATATTTGATTACAGTAAAAAGTCATCATACCATAGGCTTgcaaaa
caataataaattgATCATTTGCTAGCTACCCTACccaaatttctatcatt
ttttaaagttgttttgtttttatattcaaTTCGCCTTTTCCCATGTCCTC
CTAAATTTTAGTTGagactctctaattcgacgtttttCTATTCGATACGT
TCCATTGATCGATAATATTTAAACTCACCgtcaacaaaaaactctcataa
acgacgctccattattcgacaCATTCCCTTATTGGATgaaattcgaatta
gaaagcTTCAACTGTATACTCCATTCGCCTTTTCCAATGTCCTAAATGAC
TTACTTCAAAACACTCTGTTAAAAtaatacttttcaaattttgttagGTT
ACTGCTCGGCGTCCAAGCTGATTCTGAAAACGTGGTCATATCGCACGAAG
ATTTCACCTTCCTCGCACAAAAAGCGGACGAAAAACAGACCTTTTTACCG
CCCACCGCCCAAGTAGCCGCCCAGGAGGGTAAGTACCTTGGTAAACTTTT
AAGCAAAGTTGAATTATCTACCGCTGACCTGAAGAATGTTGACCCTTTCC
AATATAATCATCTCGGCTCGTTTGCGTACGTGGGTGATAACCGTGCCGTT
TTGGAGCTACCTATTTTAGGTTCGTTCAAGGGTTGGTCGGCTATGTGGCT
ATGGCGTGGCGCGTACGCAAGTGAATGCGTTAGTCTGCGTATGCGTACTC
TTGTGTTGTTTGATTGGATAAAATCGTTCTTGTTTGGTCGTGATACATCG
AGAATCTGAATCCTCTATAATGAACAATTAGATGCAAATTGTTTTCAATC
CAATTCAATTCGATGTTGTTG Coding sequence (CDS) from alignment at sc0000671:120948..121968+ >TCONS_00028239 ID=TCONS_00028239|Name=TCONS_00028239|organism=Clytia hemisphaerica|type=CDS|length=1008bp|location=Sequence derived from alignment at sc0000671:120948..121968+ (Clytia hemisphaerica)
GATGTTTTGAACGTAGCAAAGAAAAGATACCCACACTTATGTTCGCACTT
CAACAAGATGGAAAAGTTACTGCTCGGCGTCCAAGCTGATTCTGAAAACG
TGGTCATATCGCACGAAGATTTCACCTTCCTCGCACAAAAAGCGGACGAA
AAACAGACCTTTTTACCGCCCACCGCCCAAGTAGCCGCCCAGGAGGGTTC
GTTCAAGGGTTGGTCGGCTATGTGGCTATGGCGTGGCGCGTACGCAAGTG
AATGCGTTAGTCTGCGTATGCGTACTCTTGTGTTGTTTGATTGGATAAAA
TCGTTCTTGTTTGGTCGTGATACATCGAGAATCTGAGATGTTTTGAACGT
AGCAAAGAAAAGATACCCACACTTATGTTCGCACTTCAACAAGATGGAAA
AGTTACTGCTCGGCGTCCAAGCTGATTCTGAAAACGTGGTCATATCGCAC
GAAGATTTCACCTTCCTCGCACAAAAAGCGGACGAAAAACAGACCTTTTT
ACCGCCCACCGCCCAAGTAGCCGCCCAGGAGGGTTCGTTCAAGGGTTGGT
CGGCTATGTGGCTATGGCGTGGCGCGTACGCAAGTGAATGCGTTAGTCTG
CGTATGCGTACTCTTGTGTTGTTTGATTGGATAAAATCGTTCTTGTTTGG
TCGTGATACATCGAGAATCTGAGATGTTTTGAACGTAGCAAAGAAAAGAT
ACCCACACTTATGTTCGCACTTCAACAAGATGGAAAAGTTACTGCTCGGC
GTCCAAGCTGATTCTGAAAACGTGGTCATATCGCACGAAGATTTCACCTT
CCTCGCACAAAAAGCGGACGAAAAACAGACCTTTTTACCGCCCACCGCCC
AAGTAGCCGCCCAGGAGGGTTCGTTCAAGGGTTGGTCGGCTATGTGGCTA
TGGCGTGGCGCGTACGCAAGTGAATGCGTTAGTCTGCGTATGCGTACTCT
TGTGTTGTTTGATTGGATAAAATCGTTCTTGTTTGGTCGTGATACATCGA
GAATCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028239-exon-sc0000671-1491911889:120948..121014 | TCONS_00028239-exon-sc0000671-1491911889:120948..121014 | Clytia hemisphaerica | exon |
| TCONS_00028239-exon-sc0000671-1510915933:120948..121014 | TCONS_00028239-exon-sc0000671-1510915933:120948..121014 | Clytia hemisphaerica | exon |
| TCONS_00028239-exon-sc0000671-1575043694:120948..121014 | TCONS_00028239-exon-sc0000671-1575043694:120948..121014 | Clytia hemisphaerica | exon |
| TCONS_00028239-exon-sc0000671-1491911889:121495..121625 | TCONS_00028239-exon-sc0000671-1491911889:121495..121625 | Clytia hemisphaerica | exon |
| TCONS_00028239-exon-sc0000671-1510915933:121495..121625 | TCONS_00028239-exon-sc0000671-1510915933:121495..121625 | Clytia hemisphaerica | exon |
| TCONS_00028239-exon-sc0000671-1575043694:121495..121625 | TCONS_00028239-exon-sc0000671-1575043694:121495..121625 | Clytia hemisphaerica | exon |
| TCONS_00028239-exon-sc0000671-1491911889:121767..121968 | TCONS_00028239-exon-sc0000671-1491911889:121767..121968 | Clytia hemisphaerica | exon |
| TCONS_00028239-exon-sc0000671-1510915933:121767..121968 | TCONS_00028239-exon-sc0000671-1510915933:121767..121968 | Clytia hemisphaerica | exon |
| TCONS_00028239-exon-sc0000671-1575043694:121767..121968 | TCONS_00028239-exon-sc0000671-1575043694:121767..121968 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000671 | supercontig | sc0000671:120948..121968 + |
Blast
The following BLAST results are available for this feature:
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