TCONS_00028240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028240
Unique NameTCONS_00028240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length181

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028240 ID=TCONS_00028240|Name=TCONS_00028240|organism=Clytia hemisphaerica|type=transcript|length=181bp
GTGTTGATTTGGTTCCAATTAAAGCTATAAAAAATGTCACAACTTTTGCT
TCAGATATTACAACTGACAATTGTCGTCAGTTGTTGAAAAAAGAGTTAAA
AGGATGGAAAGCAGACGTTGTACTCAATGATGGTGCACCCAACGTTGGTT
CAGCATGGATACAAGATGCTTTCACTCAATG
Run BLAST on NCBI

transcript from alignment at sc0000671:179683..180272+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028240 ID=TCONS_00028240|Name=TCONS_00028240|organism=Clytia hemisphaerica|type=transcript|length=590bp|location=Sequence derived from alignment at sc0000671:179683..180272+ (Clytia hemisphaerica)
GTGTTGATTTGGTTCCAATTAAAGCTATAAAAAATGTCACAACTTTTGCT
TCAGATATTACAACTGACAATTGTCGTCAGGTATTTCCCTTAAactagac
ttcaaaaatttttggtttgCCGTCATCCGACCTACCCTACGTTTGTTGCt
ttaataaaaaagaatttttttcttaaaatcaaaaCCTCTATCGTGTCTAT
CTCGTTCTATCTTTAGATTAAGAATTGTGAATTTCCTTTTAGCTCTtctg
ttttcattttaaaactAAACGGACTTTTTGATTTATGAAAACTGACTTTC
TAGATATttaaaaaactctgatcaaattGCACATTAACACAGAGTGTCAA
AAACCAAATCTTTCGTGGGTTACCTGGTATTATTTAAAATCTTAATTTAC
AATAATCAAACAAGCTCAAGTCAAAatcatttcatttattttcaaacctc
TGTTTTATACTACTaaatattattttcttgtttctttAGTTGTTGAAAAA
AGAGTTAAAAGGATGGAAAGCAGACGTTGTACTCAATGATGGTGCACCCA
ACGTTGGTTCAGCATGGATACAAGATGCTTTCACTCAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015992XLOC_015992Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028240-exon-sc0000671-1491911889:179683..179762TCONS_00028240-exon-sc0000671-1491911889:179683..179762Clytia hemisphaericaexon
TCONS_00028240-exon-sc0000671-1510915933:179683..179762TCONS_00028240-exon-sc0000671-1510915933:179683..179762Clytia hemisphaericaexon
TCONS_00028240-exon-sc0000671-1575043694:179683..179762TCONS_00028240-exon-sc0000671-1575043694:179683..179762Clytia hemisphaericaexon
TCONS_00028240-exon-sc0000671-1491911889:180172..180272TCONS_00028240-exon-sc0000671-1491911889:180172..180272Clytia hemisphaericaexon
TCONS_00028240-exon-sc0000671-1510915933:180172..180272TCONS_00028240-exon-sc0000671-1510915933:180172..180272Clytia hemisphaericaexon
TCONS_00028240-exon-sc0000671-1575043694:180172..180272TCONS_00028240-exon-sc0000671-1575043694:180172..180272Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000671supercontigsc0000671:179683..180272 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	23.1126	13.6979	22.0346	28.3642	3.61062	6.70851	6.51144	4.28037	5.69922	14.7967	10.9484	14.3603	9.64949	4.94521	0	2.38309	0	0	0	0	6.90042	8.21128	0	0	0	0
Blast
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BLAST of TCONS_00028240 vs. Swiss-Prot (Human)
Match: SPB1 (pre-rRNA processing protein FTSJ3 OS=Homo sapiens GN=FTSJ3 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 2.132e-23
Identity = 40/59 (67.80%), Postives = 48/59 (81.36%), Query Frame = 3 
Query:    3 VDLVPIKAIKNVTTFASDITTDNCRQLLKKELKGWKADVVLNDGAPNVGSAWIQDAFTQ 179
            VDLVPIK + NV T   DITT+ CRQ L+KELK WK DVVLNDGAPNVG++W+ DA++Q
Sbjct:   75 VDLVPIKPLPNVVTLQQDITTERCRQALRKELKTWKVDVVLNDGAPNVGASWVHDAYSQ 133
The following BLAST results are available for this feature:
BLAST of TCONS_00028240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SPB12.132e-2367.80pre-rRNA processing protein FTSJ3 OS=Homo sapiens ... [more]
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