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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028241 ID=TCONS_00028241|Name=TCONS_00028241|organism=Clytia hemisphaerica|type=transcript|length=479bp
ATTAACCAGTGCAAAAAGCGGCAGAAGCACCACTGCACCAAGACGGGTCT
CATTTTTAATATACTCCAAATTGCTTGGGAGGTCACATTTcaccgtgtca
attcaagacagccattttccgCTCAAAAGATTACACAGCTTTACTGTGGG
TTTTTCAACAGTTATTCAAAAAAGTACATTCTACAAAGCCACAGGCTTCT
CGTAGTGAATCTGCAGAAATCTTTGTGGTTTGTCAGGGCTTCCTTGCACC
AGACAAATTGGACGAAAAATTCTTGGATCCTAGACATGTTTTTAAAGAGA
TCcataaagaagccattgtagtgttaaaaattaacgtctaacggcacTAC
attatcaaaagttttcgagggaaagtagatcatagcgctctcgatgcatt
tacaccgctattgagtagtgctgtcattagggtaccacttttcaaaaaac
ttcgatcaaagattttaCTTGGCCAGGAT Run BLAST on NCBI transcript from alignment at sc0000671:183667..185435+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028241 ID=TCONS_00028241|Name=TCONS_00028241|organism=Clytia hemisphaerica|type=transcript|length=1769bp|location=Sequence derived from alignment at sc0000671:183667..185435+ (Clytia hemisphaerica)
ATTAACCAGTGCAAAAAGCGGCAGAAGCACCACTGCACCAAGACGGGTCT
CATTTTTAATATACTCCAAATTGCTTGGGAGGTCACATTTcaccgtgtca
attcaagacagccgtaagtccattttttccataatGAGATAGTTGACTTT
AAAGGTTGGgatgtgttggacttaaggctacacatttcatttcaatgctt
catagaaaataaaatttgcactaaaatttAGGACTTAACGCTAAcattct
aaattcttatttttttttgaattgcaaaatacacctCTTTCCCATTAGGA
TTCTGTGGACTTAAGGCCGTTTTTGGAAAGCGTGCATGCTGAAATAGGGG
TTATGGTCTTAAgtctattttcgaaaaaatggacttaagtctgtcttgaa
ttgacacggcgattTGTTCATTACCTGTTCATTACCTTTGGGATATATGA
CTGCTTCATGACCTTAGAGATGACTGATCctctttatttttagattttcc
gCTCAAAAGATTACACAGCTTTACTGTGGGTTTTTCAACAGTTATTCAAA
AAAGTACATTCTACAAAGCCACAGGTACAGTACTAACCATTTGAAATCAA
GTTTACTATTTAAAATCATGGGCTCCAGACTTCAACAGACCTCAATTGAT
TCTTTTGATTGCAAAtctctttgtttacttgtttaaGTGATTTGAGCAAG
AttgaaagagaaaagaaaatcaatcaatATATGTTTTGACAAATGAGAAA
CAAGAATGCTTAAAGTGAAACTAAACCTTCAGTCATACTTTTTACTTATT
TCAGGCTTCTCGTAGTGAATNaagaaaagaaaatcaatcaatatttgttt
tgacaaaaatgagaaacaagaATGCTTAAAGTGAAACTAAACCTTCAGTC
ATACTTTTTACTTATTTCAGGCTTCTCGTAGTGAATCTGCAGAAATCTTT
GTGGTTTGTCAGGTAAATCTCATGTGTTTTAAAGATCTGGATCCAGAAAC
ACACACAAACTTCTTTAGTAAAGTAATGTAAAAACActtcttctcacaga
cccactatgggaacccttcccattggaaaaattagccaaattaTCGTCcc
tggttgaaaagttatactccaatttttgttcccactgaaaataatcaaat
aaaccaaacctcactgcaaaatattatgataattTTCCCATTTTCGCTGA
TAttcctgacttgaaaacaaaataatttacatccttggtcataaaaaata
tgggaataccaATCCCCATCGGGTTTCAttctgttatttttatccccacc
ggCTGAAAAAATCATACCGGGTTTTTGAGAAGGGGTTGTGAAAAATTTAG
CTCTGCGTTTTATAAGTATACCCAAACAATAAAACCAGGTTGAATTTGGG
TTTAAAACAATAAGTTTAGGAACAATAGAATATAAAGATAAGCGCTCTTT
TGATTTGATATCTACTTTATCTTGTATCAATACAATACTTTATTAAAAAT
GAATCaatatttgtttctttttaaagGGCTTCCTTGCACCAGACAAATTG
GACGAAAAATTCTTGGATCCTAGACATGTTTTTAAAGAGATCcataaaga
agccattgtagtgttaaaaattaacgtctaacggcacTACattatcaaaa
gttttcgagggaaagtagatcatagcgctctcgatgcatttacaccgcta
ttgagtagtgctgtcattagggtaccacttttcaaaaaacttcgatcaaa
gattttaCTTGGCCAGGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028241-exon-sc0000671-1491911889:183667..183779 | TCONS_00028241-exon-sc0000671-1491911889:183667..183779 | Clytia hemisphaerica | exon |
| TCONS_00028241-exon-sc0000671-1510915933:183667..183779 | TCONS_00028241-exon-sc0000671-1510915933:183667..183779 | Clytia hemisphaerica | exon |
| TCONS_00028241-exon-sc0000671-1575043694:183667..183779 | TCONS_00028241-exon-sc0000671-1575043694:183667..183779 | Clytia hemisphaerica | exon |
| TCONS_00028241-exon-sc0000671-1491911889:184160..184240 | TCONS_00028241-exon-sc0000671-1491911889:184160..184240 | Clytia hemisphaerica | exon |
| TCONS_00028241-exon-sc0000671-1510915933:184160..184240 | TCONS_00028241-exon-sc0000671-1510915933:184160..184240 | Clytia hemisphaerica | exon |
| TCONS_00028241-exon-sc0000671-1575043694:184160..184240 | TCONS_00028241-exon-sc0000671-1575043694:184160..184240 | Clytia hemisphaerica | exon |
| TCONS_00028241-exon-sc0000671-1491911889:184587..184628 | TCONS_00028241-exon-sc0000671-1491911889:184587..184628 | Clytia hemisphaerica | exon |
| TCONS_00028241-exon-sc0000671-1510915933:184587..184628 | TCONS_00028241-exon-sc0000671-1510915933:184587..184628 | Clytia hemisphaerica | exon |
| TCONS_00028241-exon-sc0000671-1575043694:184587..184628 | TCONS_00028241-exon-sc0000671-1575043694:184587..184628 | Clytia hemisphaerica | exon |
| TCONS_00028241-exon-sc0000671-1491911889:185193..185435 | TCONS_00028241-exon-sc0000671-1491911889:185193..185435 | Clytia hemisphaerica | exon |
| TCONS_00028241-exon-sc0000671-1510915933:185193..185435 | TCONS_00028241-exon-sc0000671-1510915933:185193..185435 | Clytia hemisphaerica | exon |
| TCONS_00028241-exon-sc0000671-1575043694:185193..185435 | TCONS_00028241-exon-sc0000671-1575043694:185193..185435 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000671 | supercontig | sc0000671:183667..185435 + |
Blast
BLAST of TCONS_00028241 vs. Swiss-Prot (Human)
Match: SPB1 (pre-rRNA processing protein FTSJ3 OS=Homo sapiens GN=FTSJ3 PE=1 SV=2) HSP 1 Score: 112.079 bits (279), Expect = 1.733e-28 Identity = 50/77 (64.94%), Postives = 62/77 (80.52%), Query Frame = 3
Query: 102 FKTAIFRSKDYTALLWVFQQLFKKVHSTKPQASRSESAEIFVVCQGFLAPDKLDEKFLDPRHVFKEIHKEAIVVLKI 332
F T +FRS+DY LLW+FQQLF++V +TKPQASR ESAEIFVVCQGFLAPDK+D KF DP+ FKE+ +A V ++
Sbjct: 154 FITKVFRSRDYQPLLWIFQQLFRRVQATKPQASRHESAEIFVVCQGFLAPDKVDSKFFDPKFAFKEVEVQAKTVTEL 230
The following BLAST results are available for this feature:
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