TCONS_00028251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028251
Unique NameTCONS_00028251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length256

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028251 ID=TCONS_00028251|Name=TCONS_00028251|organism=Clytia hemisphaerica|type=transcript|length=256bp
TCAAGCCATCGATGAAACGTTCGAACATTATGAAAGAGACCCATCGCTGA
ATTTCATGGTGATTTATATAGATGCACCAGACATTGTTGGTCACTATCAA
GGAAAGTCGTCTGATCAGtacaGAGAACGTATGGAGAATTTGGACAAAGA
AATATTAGGTTACGTATTGGAGAAATTATCTAAGCGACCTGAAATCAATC
TATTGGTGACATCAGATCATGGACATATCGATGTTGCACATGAGCATATA
CGATTT
Run BLAST on NCBI

transcript from alignment at sc0000671:77275..79226-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028251 ID=TCONS_00028251|Name=TCONS_00028251|organism=Clytia hemisphaerica|type=transcript|length=1952bp|location=Sequence derived from alignment at sc0000671:77275..79226- (Clytia hemisphaerica)
TCAAGCCATCGATGAAACGTTCGAACATTATGAAAGAGACCCATCGCTGA
ATTTCATGGTGATTTATATAGATGCACCAGACATTGTTGGTCACTATCAA
GGAAAGTCGTCTGATCAGGTATGCATAGAAGTCTTGCTGCAAAGCTTAAA
ATTGTAGTTTGAATTAAAAGGGATGAAGCTTTTACGGAAACGCAGGATTA
TCAAAAGGAAGAAAAATTTTGATTAATTCTGTGAAAAATTCTGTAAAGTT
GATTAGCGAAAAAAGAACTTTTTCAGGTCATTGTAGAATCAATCTCTCCT
TGGACATTTTGAGCCTGAAAGTCTATTCACGATAAGTGTGCACTCTTTTT
TCTTTTACCTATAACTTTTGAAAGAATTCTTCAATCTTTATAAATTTGGT
ACCATTGGAAAGATATTAGTGAGTGGAACAATTTGAAATATAAAACTATT
TGAAAAAATTCTAAAAATGAAGATGAAAATGAAGAAGAAAAAAATGAAGA
TCTTGTAACAAAGTGCTTGACTATCATTTTCACTGAAATGAATTCTTGAT
CACCGAACGTCATCACTGTGAAAATATTTCTCAAAAATAATCATTCAGTC
AAAAGATATCAAACAAAGTTATAAGCTGATTGACGTCTAAAAACGAATTT
TTCTGCTGTTTTTTGGGGTCAATCACTTATTTACTTTGTATCATAACTTT
ATATTGAATAAATATTTTAGTGAAATTTCTTCACAGTGATGACCTCCTAA
GATCAAAAAATCTCTCCAGCGATAATGAAAGTTATAGCACGTTTCTACAA
GATCTTCATTTCTATCTTCTTCATTTTCATCTTCTTTTTTAGAATTTTTT
AAAATATTTATATATTTCAAATTGTTCTACTCACTAATATCTTTCCAATG
ATACCAAATATATAAAGATTGAATAATTCCTTCAAAAGTTACAAGTAAAA
GAAAAAGGAGTGCTCACTTATCGTGAACAGACTTCAGATAAGTATTTTAA
GGATACTTTTTAAGTTGGTGGGTGTAAAAAAAGCCAGATTTTACCATCTT
AATATTAATAGAAAATTACCAAGTATCAGAGGTTAAGTTTTCAAAGAATA
TATTAACCTCTGAATACCAATAACAGAAATTTTATCGCGCATGCGTCAAT
CTAATCACTGTAGAAAGAATCAAAGATGAAGAGCAAATATTACCTTATTA
ATGTCTAGCAGACTGTATCAGTATGCAGTTTACTATTTACGAATTCCCCA
AAAACCTCCAAGTTTAATTGAAGTGAGTTTCTTTCGAAAGAAATCTTTTA
CATGATCCCCAAATGTATAACAGTAATTACTAAACTATTGTAATTATGGA
AATGTTACTTTAATTGAATCGAAATAATAGACAGACTTTATGTTATAATT
CTCTATCACTGACTCTTTTTAAAAAGCATTGCTGATATTTTTTAGTTGTG
TTTTGAACGACGGGAATAAAAATATCAACTTTGGACTTCATCCAAGATCT
TGGATGGTCGTCATGGTTACTTTTGTCTTCGTTGATTGCGCGCTGAATAG
AATCTGGATTGGTCGGCACAGCGTCGATATATGATTTCGACCTGTGCTTT
TCACGGTAATAGAAAATAGGATAAGGAAAATAATAATCAACAAACTGCAA
AAAGTTTTTTCTGGTGGAGAAAGGAAAGTTGATTCTCGCAAAATCCGAAA
AATTCGCGAAAGTTTCTTCCCCTAAAAAATAATTGCAGCTTTTCTTTAAA
AGGCTTTTAATCTTGAAATCAAACAAAGACATATATTCGACTCAATTTTA
TGTTTGATTTTCAGTACAGAGAACGTATGGAGAATTTGGACAAAGAAATA
TTAGGTTACGTATTGGAGAAATTATCTAAGCGACCTGAAATCAATCTATT
GGTGACATCAGATCATGGACATATCGATGTTGCACATGAGCATATACGAT
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_015999XLOC_015999Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028251-exon-sc0000671-1575043694:79109..79226TCONS_00028251-exon-sc0000671-1575043694:79109..79226Clytia hemisphaericaexon
TCONS_00028251-exon-sc0000671-1575043694:77275..77412TCONS_00028251-exon-sc0000671-1575043694:77275..77412Clytia hemisphaericaexon
TCONS_00028251-exon-sc0000671-1510915933:79109..79226TCONS_00028251-exon-sc0000671-1510915933:79109..79226Clytia hemisphaericaexon
TCONS_00028251-exon-sc0000671-1510915933:77275..77412TCONS_00028251-exon-sc0000671-1510915933:77275..77412Clytia hemisphaericaexon
TCONS_00028251-exon-sc0000671-1491911889:79109..79226TCONS_00028251-exon-sc0000671-1491911889:79109..79226Clytia hemisphaericaexon
TCONS_00028251-exon-sc0000671-1491911889:77275..77412TCONS_00028251-exon-sc0000671-1491911889:77275..77412Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000671supercontigsc0000671:77275..79226 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.595228	0	0	1.88242	2.23127	6.28118	0	1.76442	1.01258	0	0.464824	2.78507	4.49623	4.93439	2.97713	0.523941	2.29684	1.48385	5.4346	0.841767	0	1.96573	0	0.749347	0	0.957014	0	2.21456	1.80898
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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