TCONS_00028256 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028256
Unique NameTCONS_00028256
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length506

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028256 ID=TCONS_00028256|Name=TCONS_00028256|organism=Clytia hemisphaerica|type=transcript|length=506bp
gtgatatttttattgtaatatATTGTTTTAGGTCATCGAGACTAATCGAG
GCCTACTTAgtgcttttgttaattttgtttatcaCAGTCCTTTAAAGAAA
GTCATTGAGACAACACGTAAAATATTTCATGGTCCACACGTGCCGCATat
taaaaagagaagaaaaaagttaaagtGTGTGAGtgttgagaaaataaaat
tgtaagaaagaagagaaacataaaaattaaaaagtcgaaacaagaaaata
aataataaaagttgaaaaatggtTGATGTTGAGAAACTTGGCAAGAAGCG
CAACGCTCTCACATCATATGTTAACAAGTTGATTTTGGAGTGCGAAGAAT
GGAACAAGGAtgctaaaaataacaaaaacgcTCTTGAAACCACTTGTAAA
GTTTTAAGTAAAAAGCTACAAATTATCATTGAGATTACGGATAACATCGT
GGATGAATTAGACGATGAAGAGCAAATGGGAATACAATATGAGAAGTGTT
CCAAAG
Run BLAST on NCBI

protein sequence of TCONS_00028256-protein

>TCONS_00028256-protein ID=TCONS_00028256-protein|Name=TCONS_00028256-protein|organism=Clytia hemisphaerica|type=polypeptide|length=125bp
LEHFSYCIPICSSSSNSSTMLSVISMIICSFLLKTLQVVSRAFLLFLASL
FHSSHSKINLLTYDVRALRFLPSFSTSTIFQLLLFIFLFRLFNFYVSLLS
YNFIFSTLTHFNFFLLFLICGTCGP
Run BLAST on NCBI

transcript from alignment at sc0000671:47543..48048

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028256 ID=TCONS_00028256|Name=TCONS_00028256|organism=Clytia hemisphaerica|type=transcript|length=506bp|location=Sequence derived from alignment at sc0000671:47543..48048 (Clytia hemisphaerica)
CTTTGGAACACTTCTCATATTGTATTCCCATTTGCTCTTCATCGTCTAAT
TCATCCACGATGTTATCCGTAATCTCAATGATAATTTGTAGCTTTTTACT
TAAAACTTTACAAGTGGTTTCAAGAgcgtttttgttatttttagcaTCCT
TGTTCCATTCTTCGCACTCCAAAATCAACTTGTTAACATATGATGTGAGA
GCGTTGCGCTTCTTGCCAAGTTTCTCAACATCAaccatttttcaactttt
attatttattttcttgtttcgactttttaatttttatgtttctcttcttt
cttacaattttattttctcaacaCTCACACactttaacttttttcttctc
tttttaatATGCGGCACGTGTGGACCATGAAATATTTTACGTGTTGTCTC
AATGACTTTCTTTAAAGGACTGtgataaacaaaattaacaaaagcacTAA
GTAGGCCTCGATTAGTCTCGATGACCTAAAACAATatattacaataaaaa
tatcac

Coding sequence (CDS) from alignment at sc0000671:47543..48048

>TCONS_00028256 ID=TCONS_00028256|Name=TCONS_00028256|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at sc0000671:47543..48048 (Clytia hemisphaerica)
TTGGAACACTTCTCATATTGTATTCCCATTTGCTCTTCATCGTCTAATTC
ATCCACGATGTTATCCGTAATCTCAATGATAATTTGTAGCTTTTTACTTA
AAACTTTACAAGTGGTTTCAAGAgcgtttttgttatttttagcaTCCTTG
TTCCATTCTTCGCACTCCAAAATCAACTTGTTAACATATGATGTGAGAGC
GTTGCGCTTCTTGCCAAGTTTCTCAACATCAaccatttttcaacttttat
tatttattttcttgtttcgactttttaatttttatgtttctcttctttct
tacaattttattttctcaacaCTCACACactttaacttttttcttctctt
tttaatATGCGGCACGTGTGGACCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016004XLOC_016004Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028256-proteinTCONS_00028256-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028256-exon-sc0000671-1491911889:47543..48048TCONS_00028256-exon-sc0000671-1491911889:47543..48048Clytia hemisphaericaexon
TCONS_00028256-exon-sc0000671-1510915933:47543..48048TCONS_00028256-exon-sc0000671-1510915933:47543..48048Clytia hemisphaericaexon
TCONS_00028256-exon-sc0000671-1575043694:47543..48048TCONS_00028256-exon-sc0000671-1575043694:47543..48048Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000671supercontigsc0000671:47543..48048 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.865838	0.987249	0	0	1.28872	0.652133	1.7401	1.21589	0.966305	1.56917	1.27443	1.06418	1.31426	1.24509	1.05539	1.61223	0.636343	1.1783	0.425267	0.873702	2.79008	3.72836	1.60771	1.01786	0.392928	0.930777	2.08693	5.49289	3.83903	4.74028
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028256 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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