TCONS_00028263 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028263
Unique NameTCONS_00028263
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length518

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028263 ID=TCONS_00028263|Name=TCONS_00028263|organism=Clytia hemisphaerica|type=transcript|length=518bp
GTGGACGGGCAACGCCTTGAATACGGAATTCTTGTCTATTTCccaaaaca
aaataatcaatATTAGGGATAATTTGACGTGGTCTATAACTATGGTGTAC
TACAACTCTGTTTTTAACAGCAGGAAACTGGTTATGTGCTCGAAGGTTAA
AATCACCACCGACGATGAAAGGTTGTATTCCACTTATATTCCTCATAAGT
CGGATGAGGTCCCTCGCAGTGTCTGCTTTATGTTCATTTGTAACACGATT
GTGCGGTCCATGCCAAGAGGCGAAATAGACAACTCGTCCAGTTGGTCTCA
AAGTAGCTCGAATCACTTTCACTCTATCATTGATATCATAATTTCGGTTA
GTCATTTCTTGAAACAATTCATCACCATTGATGAACTTTtttacgtcatc
aaaatattcaacttgGCGGAACACGTTTGGTTGCCAAATAATTGCTACAT
CACGAATATTACCATTGCCAGGACTTATTTGATAATCCCTTCGTCCTAGA
ATTCCCATTAAATTGGTG
Run BLAST on NCBI

protein sequence of TCONS_00028263-protein

>TCONS_00028263-protein ID=TCONS_00028263-protein|Name=TCONS_00028263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
TNLMGILGRRDYQISPGNGNIRDVAIIWQPNVFRQVEYFDDVKKFINGDE
LFQEMTNRNYDINDRVKVIRATLRPTGRVVYFASWHGPHNRVTNEHKADT
ARDLIRLMRNISGIQPFIVGGDFNLRAHNQFPAVKNRVVVHHSYRPRQII
PNIDYFVLGNRQEFRIQGVARP
Run BLAST on NCBI

transcript from alignment at sc0000671:139290..139807

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028263 ID=TCONS_00028263|Name=TCONS_00028263|organism=Clytia hemisphaerica|type=transcript|length=518bp|location=Sequence derived from alignment at sc0000671:139290..139807 (Clytia hemisphaerica)
CACCAATTTAATGGGAATTCTAGGACGAAGGGATTATCAAATAAGTCCTG
GCAATGGTAATATTCGTGATGTAGCAATTATTTGGCAACCAAACGTGTTC
CGCcaagttgaatattttgatgacgtaaaAAAGTTCATCAATGGTGATGA
ATTGTTTCAAGAAATGACTAACCGAAATTATGATATCAATGATAGAGTGA
AAGTGATTCGAGCTACTTTGAGACCAACTGGACGAGTTGTCTATTTCGCC
TCTTGGCATGGACCGCACAATCGTGTTACAAATGAACATAAAGCAGACAC
TGCGAGGGACCTCATCCGACTTATGAGGAATATAAGTGGAATACAACCTT
TCATCGTCGGTGGTGATTTTAACCTTCGAGCACATAACCAGTTTCCTGCT
GTTAAAAACAGAGTTGTAGTACACCATAGTTATAGACCACGTCAAATTAT
CCCTAATattgattattttgttttggGAAATAGACAAGAATTCCGTATTC
AAGGCGTTGCCCGTCCAC

Coding sequence (CDS) from alignment at sc0000671:139290..139807

>TCONS_00028263 ID=TCONS_00028263|Name=TCONS_00028263|organism=Clytia hemisphaerica|type=CDS|length=516bp|location=Sequence derived from alignment at sc0000671:139290..139807 (Clytia hemisphaerica)
ACCAATTTAATGGGAATTCTAGGACGAAGGGATTATCAAATAAGTCCTGG
CAATGGTAATATTCGTGATGTAGCAATTATTTGGCAACCAAACGTGTTCC
GCcaagttgaatattttgatgacgtaaaAAAGTTCATCAATGGTGATGAA
TTGTTTCAAGAAATGACTAACCGAAATTATGATATCAATGATAGAGTGAA
AGTGATTCGAGCTACTTTGAGACCAACTGGACGAGTTGTCTATTTCGCCT
CTTGGCATGGACCGCACAATCGTGTTACAAATGAACATAAAGCAGACACT
GCGAGGGACCTCATCCGACTTATGAGGAATATAAGTGGAATACAACCTTT
CATCGTCGGTGGTGATTTTAACCTTCGAGCACATAACCAGTTTCCTGCTG
TTAAAAACAGAGTTGTAGTACACCATAGTTATAGACCACGTCAAATTATC
CCTAATattgattattttgttttggGAAATAGACAAGAATTCCGTATTCA
AGGCGTTGCCCGTCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016011XLOC_016011Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028263-proteinTCONS_00028263-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028263-exon-sc0000671-1491911889:139290..139807TCONS_00028263-exon-sc0000671-1491911889:139290..139807Clytia hemisphaericaexon
TCONS_00028263-exon-sc0000671-1510915933:139290..139807TCONS_00028263-exon-sc0000671-1510915933:139290..139807Clytia hemisphaericaexon
TCONS_00028263-exon-sc0000671-1575043694:139290..139807TCONS_00028263-exon-sc0000671-1575043694:139290..139807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000671supercontigsc0000671:139290..139807 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.111962	0	0	0.154834	0	7.97107	9.8117	5.22462	4.07467	2.44278	2.14105	5.72697	3.72711	1.56469	2.16891	4.05098	2.56195	10.7405	12.7717	1.11009	2.11171	0.92151	0.718103	1.84907	2.09032	1.10204	0.504053	0.254871	0.389509
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005135Endo/exonuclease/phosphatase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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