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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028271 ID=TCONS_00028271|Name=TCONS_00028271|organism=Clytia hemisphaerica|type=transcript|length=920bp
CTTAGGGCGAAGTTTGGGCGGCACCAACCTGGGGCGGCACTTCTTAAATA
AGACCCTGTCTATATGTCATAAATACATACTAAAGCTCTATCCATATgga
catttttaaacaaaaaaaatcaaaatgtcgtCGGGAAGGGAAGATCCTCG
TCGTTCCAACAGAATTTATAGATACAAACCTTCTGCAAATAAGCCAGGAG
ATGACCCAACAGCTGACTACCTCAACCTGATGGGTATGATTTTCAGTATG
TGTGGTTTAATGATGAGGaTGAAATGGGCTGCTTGGGCTGCTGTTTATTG
TTCATTTATCAGTTTTGCTAATTCAAGAGCTTCAGAAGATGCAAGGCAGA
TGTTCAGCAGTTTCTTATTATCTGTATCTGCTGTAGTGATGTCTTATTTA
CAAAACCCCCAACCGATGGCTGCAAGTTGGTGACGTTTGTTTTAATTTGT
TTCNTTACAAAACCCCCAACCGATGGCTGCAAGTTGGTGACGTTGGTTTT
AATTTGTTTCACAATCATACACCTATAAACCCTTAATGGCGCGGTCGACT
TTTGAATGGTCCAGTAATGATGTTACACAGAAATGACGTCAAAACTCTTT
GTATTATGAAATGttaatgcaatgacttcagacattttgacgtcatttct
tcCTGGTAAACTCCAACGCAACCTCCTCACGCTTTTAAAGGTTGCATGTT
ATGtggaaacaaatttttataaaatagggAATATTTTAATTCTTCATATT
AGTGTTAGCAGAATAAACGATActactttttgaagtttttctttggGGTT
TCAGAAAGGCACTTACTGGATTTATGTCCATGCTTGAATCATTTTGGGGT
ATTTAATAAATGGTGAGATTAACGCTAAAATTTCAATATAATTGCTCTCA
CAGGGAGCTTCAATTGCAAC Run BLAST on NCBI protein sequence of TCONS_00028271-protein >TCONS_00028271-protein ID=TCONS_00028271-protein|Name=TCONS_00028271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MSSGREDPRRSNRIYRYKPSANKPGDDPTADYLNLMGMIFSMCGLMMRMK
WAAWAAVYCSFISFANSRASEDARQMFSSFLLSVSAVVMSYLQNPQPMAA
SW Run BLAST on NCBI transcript from alignment at sc0000672:53002..65920+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028271 ID=TCONS_00028271|Name=TCONS_00028271|organism=Clytia hemisphaerica|type=transcript|length=12919bp|location=Sequence derived from alignment at sc0000672:53002..65920+ (Clytia hemisphaerica)
CTTAGGGCGAAGTTTGGGCGGCACCAACCTGGGGCGGCACTTCTTAAATA
AGACCCTGTCTATATGTCATAAATACATACTAAAGCTCTATCCATATgga
catttttaaacaaaaaaaatcaaaatgtcgtCGGGAAGGGAAGATCCTCG
TCGTTCCAACAGAATTTATAGATACAAACCTTCTGCAAATAAGCCAGGAG
ATGACCCAACAGCTGACTACCTCAACCTGATGGGTATGATTTTCAGTATG
TGTGGTTTAATGATGAGGGTAAGCActcaattacttttttataccTAACA
CTTTTTGAATATAGTCTagctaaaattttctttttttcttttttttcttt
ttgtgtttaaagctttacaaacatTACAGTTGGAGGCCTTTTAAGAATGT
AATAGTGTTTGGTTTACCTATTTGTGCTCATCATTTTTTgagctcaaggt
ttatttttctttgcaaatttttgtcttcaacttCAATCTTAAAAATAGGT
GATGAGGCGACAATCcaaaatatgttccattcgggTCCTAAAACATCTTA
AAATCCAGTCGCTCAGTCAGTCGGAGTCGGTCGGTCAGTATTAaattttg
tcggatttttataaatcccgatgaatcaagtcggcaatcaacagtATCTT
TTAGGACCCTCCCAGCGCTCCGGATACCGGAAATCTCCGGTGTTTTCCGG
TGCAGCTAAAAAAACGCCATTTTTCACACCGGATTTTCGCACGCTCTAAA
GAGCCGTTTAGACAACAGGGTCACGAAAAAATAAATGTGATTAGCCAGTA
CCAACCGAACTTTTTATTTGATCACTGCGCAGCGAACGCTATCGCATTTA
TATTGCAGAAATTATGCATCGGAAGCACCGGAACGTTCTGGTGTTCCGGT
GCAGCTCGATTCGGAAAAATCTTGCACCGGACCGGAACGTTCCGGTGTTC
AGGTGCACGAAAAAAACAGCACTTTTTGCACCGGAGgtttccggagcgcc
gggagggtctTTATCTTTTAtcccgccatctttaatttgtCAAACTAAAT
GTGCACACACATGTGTTACCTTAAAAAGCGGCCCTTATTTACGGCCCCCA
gggtattggccctaccgcgttgctgaattttgacatgaaaatttcaataa
gggtacatgaaaaaacttgaatGGGACTCAAATGTGGgtttagaaaacaa
aaaataataattcaaaGACATGCTCCGTTTGCCCGTGCCCGCCATTATGG
GAAAGATCTGAACCTGCGAACAGCGCCCAAAAAACCCTGATGATTTTACT
GACTTTCCGGCTAGTTccaaacacgggtcacgggttattattattattaa
tttatttggtaaAGAAGGTCAATACAAACTAGCAGACAGTGAAAAACCAC
TGATGTGGACCTACTATAAATCTAAGATAAAATATCGGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTTC
TTCTTGATTCGTTCGATGAAACGAGCAGCTTTAATGTGGATCTTTTCTAT
ATCGTCCAGTAGGTGATCAGCACAATTCCCCCAGATCAAGATACCATATA
GAACTGATGGTAAAATACCGCTATTATAGATTGTTCTAAGCGTATATTTA
TCAAGGGTGTTCATTTTGTAAAGGTTTTTAAGTTTGTTGCTAAAGGCATT
ACACACCATTTCCGTATGAGGGCCCCATGATAGTTTATTGTCAAGAATCA
CACCAAGACATTTAGTTTTGTCAGTTATTTTGATAGAATTGTTGTTGATC
TTAACATCTGGTAGGGGACCAATGAACTTCTGTTTGCTTAATATCAATAT
TTGACATTTATCTGGATGGATTGTAAGACAGTTCTCTAACGAATAATTAG
CAATTAGNATTTACggttacggggcacggggtacgggtcacaggcacggg
gcacggggcatacaatttacagaccggaaaaaatataacgatatcatgac
gtataattAATTACACGTACTACATaacataacacatataatagtactaa
tactactaatatagtatgtctgaaacaattatatacgaatagtattagca
tgaaaatttttaaataatatgtcacccacaaattttgacaaaatgatatt
gaatgacaaaaatattgtcaaaatcatgaaatataaggcctctgaaccaa
tttacagcaaaatgtttttcatactcaataggatgctaatcatgtgactg
gatatttattgacatgttttaaaacgattaaatgctgttagatagtggtt
ttagagatatgagtataattacatcatttttattaaaaattcataatggt
aggtggaaaatattgacacatttataaaaatataccatcatttctacgtt
attatccattaaaattatattcatactcatagtgatggaggggatataaT
GAGAGATGATTTAACAATAGCCATCATTTTCGTGAGAAAGCTCGCTTTTC
AGGCAATGGGAATTGTTATATGTATATTACTTAcgtataacatataacat
gcatataacactaaaagtgtattattgataatataagcttattatatgta
tgtaatatgttgCGGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTAATATGTTGCggtgttttctggtctgcattatacacgacgca
aacttcgaaagcacgtggaaagcacgtggttaggttttagcgttttaaat
agtcatacgtggatcgataatttttagtgtttttaaaacattttctgttt
gaattactttgatctgAGCTGCCCCGTAACctgtgtttcgaactagccgc
tgACTTTCCGAATCgggttttcttgtaaataaacagtCGGTTGGACAACC
CGAAcgcaacatatttttgattgccgcctgAACGAGTATTTGATAGGGTG
GTGACCCtgaggccaaaattttcccctcaaattttgaaaaccaaactaat
tttatttgaaagtccttacctttgtgagaaaaatgaggggtcatttgtta
aaattgcttaagtagttcaaaagttattctattttcaaaccacaaaaaaa
ccaccttttcaaGGAATCGTCTCCCTACCACGCGCAACCAAGAAATGACC
TTTGGACAGCATCGAAAAACATTAAAGATGGCAGGTGAATTATAGCCTTC
CGCGTGGCGGggcgtgaggagttttgctggcgcggtctgaaaatcggccc
gatgactgttaaactttagcctatggctaatgagctggaaatgatagcta
aaaacaaattttaccaatgaaaagctgaaacccttAGCTTTCTAACGATA
TATGGTAgtcctgataaaaatttcaggaaagtgccgaaaaatcgaaattt
cttcttttttctcgatttaaagacagcccgtagattatcgaaaaggctac
cacgtgacaaactaaagtactatctttcctgtgttttatataaaaaaacc
gtCTATAGCTaatccagctcaatagcgatagCCATTTGAAAAAAGGTGGT
CGAGGTAGACGGTGGAGCCACGAATTCTGAGTTGCCATTTTTCCACCTTG
ATGTCTAAtaaatggtatatctttttattgaaggtaggtaatgggatgga
gttttttcctttgttttctctgataaattctgagtttaaaaaaaaaaaag
aatgaataagtttggagttgttaaggataagttatgatggatggaatgtt
ctaattttgattttcgacttgtTACGTAAAAAATCCcaacgagtgcgcac
cctataTTTGACTAGGAGGGTGgtcagtcgaaatttcaaactcatttgca
aaatgtcaaaccaagtttaatgaaaagcccttatcctcagaaaaaaaatc
agggGTCACTCATCTTTAAACCTTTAGTAGTTTTCCAGATATTCCATTTC
AAAGttccattttttgaagatttccgTAGAAAAATTCCCCGCCATCTTGT
AACCTCTTCACGgcactgaaatcgaaagtgtttcacaaaaaaaatccttG
CGAGAAGTTTGGGGCGAGTGAGTTTTTCCGTAGCGCAAGCTACAAACTGG
GGTCACCGTACCATTAACTTTCCCTTTAGCGCTTTCCACCCGCGAATCTA
tttgattaaagattttttcagatttggaaagaataaacatttatcttgtt
aaaataataaccttggttgaaaaatattgtagGGCCGATAGCTGACTCGG
GTGGTTAGAGCTTTTGATTTTAGTAACCCCtggtaaaaaaatttcctgTG
CCGTGAACAAGACGTCTGAAAAAGCGCATCCgcgagtactcattttcaaa
ttttgaaagaacgaaaagacatatcttgataatttcttttgcaaaagaaa
gctgaataaattctcttAAAGTTGGAAAAAGAATTTGTGCTAGAAAACTT
TTCCTTCCTGGATTTATGtaagtttgaagattttttttcaaaagtcctgC
TTTTGTTACTGCCGCAGGCTCGAGCCTCGACCTCCCTAatttgactgatg
gttatgattttttcacagaacatagtaaaaccaTTCAGAAAATAGTCGTC
TAAGAAAActgctattcttttttagaatcttccttaggcaattacttttt
tattttctggtttactgacattatgaggaaaagttttggacaggaggatg
gaaaaaaaataaaaataaaattgatgttttgaaatttttttattttcttt
ttaaaaatctgaaacagaggaaataatgaaataaaattttatgaaatttc
ctaaagtatcgattttttagatttaaagacaaaagaatAAAGTGCAAGAT
GTATAGATTAGTTTTAGATAGAGTCTATGGatgaaaaacactaaaaataa
actgaaacataaaaaatgtacATATAAAGACTGATATGTGTATATGTAAG
ACTGACATAGGTTCCCATTTAGGGTTCACCCTtagggttcccacttaggt
tcccccatctcACTTTTCTGGTATGCCTATTTTTATATATACTCTTGAAT
TTTTTAATGATATAAAGGACTTTGAATAAAagtaattacaaaaaaaaaaa
aaaaatcgactGCATACACAAAGAGTTATataatttagtttgttttttgt
ggatAAGGAAAATACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNAGATCATTTAACcccctctctctttctcttct
tttcttttgttttcctgtttaagtaaaggttttttatttatttcttcttt
tttgaaggtcggagaagaaaaagtaaataaaagtttttgaaatctctatt
ttttattttttttattttggcaaacaTAACGTCGGTGGATCCGTAAACCa
atgaataaaaaagtatttgccttacaatctagtttttatatttataaaaa
ctagattgctggcgtgtggaaaggaatgtcggcgtgacTGGTACTTtggt
ttcgataataacatcaaagcgggaactaattttcttcccgtttctttctt
tcctttttctttcttataagttcaagttcaaattttttcaattctggatt
ttgtttttgtgctcATCACTTTAATTGTGAATCACATTTTCATGagagtg
aagagatatcgacGCATTATGTAACCttaattgctattagtaattatgcg
ttcaattcgaatctatgatctgttcTCTCCTAGTGAGGAGTTTAATACCC
TTATAACAACGGTATTGTATAAGCactgaatactgaaattcaaataacga
ccacgcgagaaagataagcaaacgattggatcaagtgtcaaacattttga
cccggaaatcaATTATCATTCTGCCTTTAAAGCATAAAACAAGAAGTTCT
ATGATTCTGAAAGAAGTTATTTGACGATTCTCTTACAAAGAATTGCTCGC
TCACTCAatggctgaaagtgaaagtgaaagtagtgaaaGTGAAACTTTCA
GTCACCAAACGCAGGCGCAAACGCCTATACCCGTTCAtctatatctcagc
cttgaataatcgcttgtggtaaaaaaaagattgaagaacaaaaaacttaa
aaaaattcttattaagtgatgctatcatagcttatctaaaccttacacag
agagcggaggtaatatatgctagttacttgtttgattgaccttcattaTG
ATAGAAAGagtattaaaaaaagaaatttgaagaattgaaaaatttgacat
cCATCgggatcgaactcggaaaccTATGCTTACGAGACAGACGctctaac
cgcttgagctaaccacgcttggagAGTGTGAGGCAAAgcttataagaaag
aaaaagaaaagaaagaaaattagttcccgctttgatgttattatcgaaac
aaaaggatcagtcacgccaacattcctttccacacgtcagcaatctagtt
tttataaatataaaaactagattgtaaggaagatCCTAAAAAAGAATAGC
AGTTTTCTTAGACGACTACGTTTCAGGAACTTTTACATTGTGTGGCAGTG
TAAGGTGGGGCTGGATCTGAATGTCCGGTAGGAATATTGGGTTAGGTTTG
AAAGGATCGTATTTTTTCCCACCCGACATCAAATTCCAACCGGACAATTG
TACGGTCAGTTACGTGGAAGTACTTCGATTTGTGAAGCatggaacaaaaa
aaaaagcaaaataacaaaggaattacccatagccacCATTTTGCAACCAT
GGGGAGTCACCATTTTACagaaatgggaatcctcataCATATCAAATAAA
GCATTTTCTGAAGATTTCATTctcgaaaatgaaaaatgaagaagtgttat
taaatgttttaaaattccttatagaaaGACACATTCTCCTACAAAGAGCC
TTCATAAAAATGACctagaaaaaagttgttaaaaagtatTTCATTTTGTC
TCAGCAATTTCGTAAACTATGTCACAATCACAgagcgctgacttttagtt
ttatgacttgtTCTTACTGGTTTGGTTCgcgtaataaaaagaaagtcgtt
attgGGAACTTTGAACATGCTAATAATCgaggtacttccactaactgacc
GAACTGGGAATTCGATCGcagttaaaactcaaaaagctttgtttaataaa
atcaaaattttggtgttgtttatttgtttgaatCAGTAATTTAAAAGATA
GTGAAGAAGCCAGTGTTGCTAGCACGAAAGTGATGGGACCACCAAACTTT
GCACATTGTTGAAAATAGGCTAACTTGAAATCCACAGACACATACATTCC
ATCGTAGTCGTACCCACCAAGGTCAATCGAAAACTGGGAAATCTTTCACT
GACCAACTGCCTGCCCGCCTGTGCCCTCGCATATTTTAAACAACTGCTGC
AATgggaacagaacaatttttctaTGGTCGCCCCATCTTAAATTATATGC
AAAATTTCTGGAATGAAAAAAAGCTGTGGTTGgattaagtttgaaaaaag
caaacataagtttacacaaagattacaGACAATTAGCcacggtcgtggct
tcttcgtaaagacgaaagacagatctggacttatttcgtactttccagtc
tcttgttcgtagtttttctgactttctggttctgtgTGAGTNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGATCTGGTTCTGTGT
gagttatttactatgttttctaacttactgaatgacttaccgacagatcg
ccaccggtgggattcgaacccactaaatgcaaagtttagatgttttgaaa
cccaatgcctgatccactgcgccacggattcatgcagAAAGAgcgtttct
gacggctatttatattgtacaaactacagaccagactgtattaagagaaa
atcacaaaagagtgcttttttcgagctccaaccctaacgaAGAAGCCTTT
ACCATTAGCCACACTAGTGTCCTGCCAAAAATGCATATAAAAGATTAATG
CTGTGAAATCGCTTTATCGTTTTACTTGTTGTCTCACAAGCAAAAGAATG
TACCGCAAAACTTCTACAGAGCAGTTATATATAGAAAGATTTTCTGGCAc
tctttaatgaaattaacattttgaggaaactttgagaaattcagCTGGAC
ACACACTCGTATTTTTGCGAAGcaaatttatgagcgaagcagttttgcta
cattgtgtgcacgtacctttaacttctatcccaagcaaaaatttgctata
taaataacatcttcaaaccgatgattttgtctaaatgaccttgaatggtt
tggcttgccATGGAAATTTTCTCGATTTGGTAGCCAGGACTgcaaaaaat
gccgttttaaaatggtaccCTAGCAGTagtgaacagcaaaaaaataCCGG
AAACCGTAACACGGacttgatcaaattgccgcgcgggcacgCATCTAAAC
AGTGATTCTtcagttttaaatgtttattttgctgttaaatagaaaaataa
ttagtttgaacggtgacagaaaggatcttcatcattccttgacttttaac
atcAAGTATCAAGTAttaaataaggtcaatcaatgagaggtttttgcaag
tcgcgcaggcgggaggagtgctcttttagtgaactaaacttaccttgcaa
aaccaagtggatatttaATGATAAAGAaggtacggaggtaatcaaattca
agaaaacaaatcaaaactggCCAAGAACCAAAAAGCCATCGTTGTAGATT
TTggcttttgtttacttttgattttgacagacgattggaataaaaatgtt
cgaacgtTCAATTCTACAAatattgtttgatttttctaaggcaccattta
cattagaagaactagaaagaaagaaagtgtGTTGTGCAGGGCGTTGGTGT
CGTGCCGCCGTGGTTTGTGTGGTGAGTTTGGGGTATTATAAGGTTTACGA
CCCTCCTGTTTCTTTTAGGGTTTTGtcagagtgtctcttattttgctagt
aACTTGGATCgtttcgcaacccttatacaatatgGCTAGTTGTGTCCATA
TAAACTCATCATTTAACAACACAAATGAGCCAACATTTCTGCAAAAGAGA
CCatgacaaatgaaatttcactgCTAGTGCGccctttcttatttttttct
tcaaactttcttCCTTCAAAATAGCCAATGCCTATTGGAAAATTATAGAG
GGAAACCGCCTTAATGTGATCAACAAATTACAAGTATGTTATTTGCCACA
CAGGTGAGAGGTTTCGCACTCCACTGTGTAATGCTgcaaatttcttcttc
ttcattttcgaagaAGGCAAGTCgtggaaagttgaaaaatggTACCATTT
AGCTAATGAAAGCCACCAGTTATATTTAGTTATATTTACTCGATTTACTT
GCTATCAATTGCAATTTAAGTTAGCggtaaatttctttgatttttgacta
ttttcttttgttccatacagcaatttttttacaaaatatcaagCTCAAAA
TTATACAGAAAGTTGGACTGAAattatatattaaaaaaatgcccaaaaaa
tgTCTGTGCGGGAAGTTTGGAGTGAGAGTGTTTCTCTGTATCTATTTTAG
TTGTGCAAGCTGTAGATAGGCAGTCTGGGAAATGTACTTAATCATGCACT
TATTTTCTGCTTAAATCATAAATCTGCGGATGAATTCTCTTcaatttgga
aaaaacttttattgctGGCTGACATATCAAAAGATCTATACAGTAGGTTT
TCAAGACTGTtcaacaattttaaaaacttttatgtGGATTGGAATGTTTT
GTCTTGCCCAGACTTTAATTTCTAAAAAGGCCTGTGCTTGATAGAGTTAC
AGCAAAAAGGACATTATGTCTTCATCCCTGATTTAGGAGGGAGAAGATTA
GTTTTGGAGCAAAGGTAGTAGATTTTTATTGAAAGGTATACAACATTGag
attttcagcaaaaattggaggtacattaaaggaagaaattttggcaggaa
tttaatttgacagatggctgaaaaagttttttcagagggaatttaatttg
gcggttttaacttgaaaattttaatttggtgggaatttaatttggcagat
gaaggacatttttgtccaaaaaaaagccattaaaaaaggaaaaacctgtt
ttaaagccaGAAATAGCTAGCACACATTGAGGGGAATGAATAGagcaatt
taaatttggcaggaattATATTTGGCAGATGACGGAAAATCTTTTTGACC
ATATCCGCCAAATtcaccaaattaagttcccgcccaaaatttcttccttt
aatgtaatcTATATGAACCAGATGGTTGCCAGAGACATTATTAGAGACTC
GACAGAAAATCATTAGAAATAAGTTTGTGTCCCAAACTTTCTTTGACATT
TAGTTTGGAATGTCTTTTATTAGCTGCCTGCCGATGGTTCCCTCTTTTAA
AACGTTTTGACAAAAGCTGATTTGATAAAATCAGAGATGAAAATTTAATA
ACCTTCGATTACAAtcttattttgtattttgtagaTGAAATGGGCTGCTT
GGGCTGCTGTTTATTGTTCATTTATCAGTTTTGCTAATTCAAGAGCTTCA
GAAGATGCAAGGCAGATGTTCAGCAGTTTCTTGTAAGAAATTGTCTTTTT
ATTTAGATTTCTCCAGATTTTTTTCTTACaggcctttgaaaaaaaaggtg
tTACAAAtggattacacgctttttttataagaatatctctataagaatat
taggctgaaaattggccaaattgttagaataccctaagaataccctctaa
gGTGAGTTTCACAGAGTTTGataatacagtcattttgtatttggttgtGT
TAAcaggaaaaactgcttcctttgttatacttgaatttaaactttgaggc
agaaatgtaaatttagctccaaaatgttcattcaaaagtccagaactctc
atgtttgtaaaaaaatcttgaagtctaaaaaagtaCGAATACATTtcacc
ctcatccaaagtacactattttcataaaaaacaacatatttaagtcagaa
aaattcttgttgttgttgtcaaCGTAGAATGTGGCAAGAGCTAAAAAGAC
TACTTTGGAAATGTTAAAtggaaattcgaaattttcttttgttaggCTCA
TTTTGTGAATAGAAGGAGGAAGGATTCACACACCTACTGAAAAACCTTGA
GTTAAACTTCtaagaaacaatttttttatatacttAGATTCAATTTGAAA
ATGCCAAACATTCGTTattttttcatccagatttttTGACATTATCTTTC
TCTTTGCTTTTCAAGATTATCTGTATCTGCTGTAGTGATGTCTTATTTAC
AAAACCCCCAACCGATGGCTGCAAGTTGGTGACGTTTGTTTTAATTTGTT
TCNTTACAAAACCCCCAACCGATGGCTGCAAGTTGGTGACGTTGGTTTTA
ATTTGTTTCACAATCATACACCTATAAACCCTTAATGGCGCGGTCGACTT
TTGAATGGTCCAGTAATGATGTTACACAGAAATGACGTCAAAACTCTTTG
TATTATGAAATGttaatgcaatgacttcagacattttgacgtcatttctt
cCTGGTAAACTCCAACGCAACCTCCTCACGCTTTTAAAGGTTGCATGTTA
TGtggaaacaaatttttataaaatagggAATATTTTAATTCTTCATATTA
GTGTTAGCAGAATAAACGATActactttttgaagtttttctttggGGTTT
CAGAAAGGCACTTACTGGATTTATGTCCATGCTTGAATCATTTTGGGGTA
TTTAATAAATGGTGAGATTAACGCTAAAATTTCAATATAATTGCTCTCAC
AGGGAGCTTCAATTGCAAC Coding sequence (CDS) from alignment at sc0000672:53002..65920+ >TCONS_00028271 ID=TCONS_00028271|Name=TCONS_00028271|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at sc0000672:53002..65920+ (Clytia hemisphaerica)
atgtcgtCGGGAAGGGAAGATCCTCGTCGTTCCAACAGAATTTATAGATA
CAAACCTTCTGCAAATAAGCCAGGAGATGACCCAACAGCTGACTACCTCA
ACCTGATGGGTATGATTTTCAGTATGTGTGGTTTAATGATGAGGaTGAAA
TGGGCTGCTTGGGCTGCTGTTTATTGTTCATTTATCAGTTTTGCTAATTC
AAGAGCTTCAGAAGATGCAAGGCAGATGTTCAGCAGTTTCTTATTATCTG
TATCTGCTGTAGTGATGTCTTATTTACAAAACCCCCAACCGATGGCTGCA
AGTTGGTGAatgtcgtCGGGAAGGGAAGATCCTCGTCGTTCCAACAGAAT
TTATAGATACAAACCTTCTGCAAATAAGCCAGGAGATGACCCAACAGCTG
ACTACCTCAACCTGATGGGTATGATTTTCAGTATGTGTGGTTTAATGATG
AGGaTGAAATGGGCTGCTTGGGCTGCTGTTTATTGTTCATTTATCAGTTT
TGCTAATTCAAGAGCTTCAGAAGATGCAAGGCAGATGTTCAGCAGTTTCT
TATTATCTGTATCTGCTGTAGTGATGTCTTATTTACAAAACCCCCAACCG
ATGGCTGCAAGTTGGTGAatgtcgtCGGGAAGGGAAGATCCTCGTCGTTC
CAACAGAATTTATAGATACAAACCTTCTGCAAATAAGCCAGGAGATGACC
CAACAGCTGACTACCTCAACCTGATGGGTATGATTTTCAGTATGTGTGGT
TTAATGATGAGGaTGAAATGGGCTGCTTGGGCTGCTGTTTATTGTTCATT
TATCAGTTTTGCTAATTCAAGAGCTTCAGAAGATGCAAGGCAGATGTTCA
GCAGTTTCTTATTATCTGTATCTGCTGTAGTGATGTCTTATTTACAAAAC
CCCCAACCGATGGCTGCAAGTTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028271-exon-sc0000672-1491911889:53002..53269 | TCONS_00028271-exon-sc0000672-1491911889:53002..53269 | Clytia hemisphaerica | exon |
| TCONS_00028271-exon-sc0000672-1510915933:53002..53269 | TCONS_00028271-exon-sc0000672-1510915933:53002..53269 | Clytia hemisphaerica | exon |
| TCONS_00028271-exon-sc0000672-1575043694:53002..53269 | TCONS_00028271-exon-sc0000672-1575043694:53002..53269 | Clytia hemisphaerica | exon |
| TCONS_00028271-exon-sc0000672-1491911889:64586..64683 | TCONS_00028271-exon-sc0000672-1491911889:64586..64683 | Clytia hemisphaerica | exon |
| TCONS_00028271-exon-sc0000672-1510915933:64586..64683 | TCONS_00028271-exon-sc0000672-1510915933:64586..64683 | Clytia hemisphaerica | exon |
| TCONS_00028271-exon-sc0000672-1575043694:64586..64683 | TCONS_00028271-exon-sc0000672-1575043694:64586..64683 | Clytia hemisphaerica | exon |
| TCONS_00028271-exon-sc0000672-1491911889:65367..65920 | TCONS_00028271-exon-sc0000672-1491911889:65367..65920 | Clytia hemisphaerica | exon |
| TCONS_00028271-exon-sc0000672-1510915933:65367..65920 | TCONS_00028271-exon-sc0000672-1510915933:65367..65920 | Clytia hemisphaerica | exon |
| TCONS_00028271-exon-sc0000672-1575043694:65367..65920 | TCONS_00028271-exon-sc0000672-1575043694:65367..65920 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000672 | supercontig | sc0000672:53002..65920 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR005351 | UPF0139 |
Blast
BLAST of TCONS_00028271 vs. Swiss-Prot (Human)
Match: ASTER (Protein Asterix OS=Homo sapiens GN=WDR83OS PE=1 SV=1) HSP 1 Score: 126.716 bits (317), Expect = 1.290e-35 Identity = 70/104 (67.31%), Postives = 83/104 (79.81%), Query Frame = 2
Query: 128 SSGREDPRRSNRIYRYKP---SANKPGDDPTADYLNLMGMIFSMCGLMMRMKWAAWAAVYCSFISFANSRASEDARQXXXXXXXXXXXXXXXYLQNPQPMAASW 430
++ DPRR N++ RYKP N DDPT DY+NL+GMIFSMCGLM+++KW AW AVYCSFISFANSR+SED +QM SSF+LS+SAVVMSYLQNPQPM W
Sbjct: 3 TNNMSDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAVYCSFISFANSRSSEDTKQMMSSFMLSISAVVMSYLQNPQPMTPPW 106
The following BLAST results are available for this feature:
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