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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028281 ID=TCONS_00028281|Name=TCONS_00028281|organism=Clytia hemisphaerica|type=transcript|length=1373bpRun BLAST on NCBI protein sequence of TCONS_00028281-protein >TCONS_00028281-protein ID=TCONS_00028281-protein|Name=TCONS_00028281-protein|organism=Clytia hemisphaerica|type=polypeptide|length=312bp MESLQTVRNTDDNVGGSLIFDEVVIKIEQEDYEEIPDSYCMEEKEARNYTRun BLAST on NCBI transcript from alignment at sc0000672:149259..153894+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028281 ID=TCONS_00028281|Name=TCONS_00028281|organism=Clytia hemisphaerica|type=transcript|length=4636bp|location=Sequence derived from alignment at sc0000672:149259..153894+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000672:149259..153894+ >TCONS_00028281 ID=TCONS_00028281|Name=TCONS_00028281|organism=Clytia hemisphaerica|type=CDS|length=2817bp|location=Sequence derived from alignment at sc0000672:149259..153894+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028281 vs. Swiss-Prot (Human)
Match: ZN235 (Zinc finger protein 235 OS=Homo sapiens GN=ZNF235 PE=2 SV=3) HSP 1 Score: 255.758 bits (652), Expect = 3.166e-76 Identity = 124/248 (50.00%), Postives = 163/248 (65.73%), Query Frame = 2
Query: 212 CGKEFTASSHSNNNLLVQTKMKSFNCNICTKEFTRRSSFIDHFRIHTGEKPNKCDVCGKGFNQSGNLQTHLRIHTGEKPYKCDLCHKEFNDVRNFKRHLRIHTGEKPFKCNVCDKQFSESNHLKRHLLSHTGERPFKCDVCKRDFRYAAHLKEHLRTHTGEKPYKCDVCGRTFTTSTTLRKHKIIHNSERPFKCDVCEKSFKRSSYLKRHAFIHT-EKPFKCDVCEKRFLRLNYLKTHIASSHKDESP 952
CGK F+ S + +++ V T K + C C K F+ SSF H R+HTGEKP +C+VCGKGF+QS Q H R+HTGEKPYKC++C K FN N H R+HTGEKP+KC C K FS++++L+ H HTGE+PFKCD C++ F A+HL+ H R HTGEKPYKCD CG+ F+ + L+ H+IIH E+PFKC+ C K F S+ L H +HT EKP+ C C K F + ++ TH H E P
Sbjct: 464 CGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTH-QRVHTGERP 710 HSP 2 Score: 253.447 bits (646), Expect = 1.947e-75 Identity = 118/239 (49.37%), Postives = 163/239 (68.20%), Query Frame = 2
Query: 209 VCGKEFTASSHSNNNLLVQTKMKSFNCNICTKEFTRRSSFIDHFRIHTGEKPNKCDVCGKGFNQSGNLQTHLRIHTGEKPYKCDLCHKEFNDVRNFKRHLRIHTGEKPFKCNVCDKQFSESNHLKRHLLSHTGERPFKCDVCKRDFRYAAHLKEHLRTHTGEKPYKCDVCGRTFTTSTTLRKHKIIHNSERPFKCDVCEKSFKRSSYLKRHAFIHT-EKPFKCDVCEKRFLRLNYLKTH 922
VCGK FT SH + + T K + C C K F+ S+ H R+HT EKP KCD CGK F+ S NL +H R+HTGEKPYKC+ C K F+ +F+ H R+HTGEKPF+CNVC K FS+S++ + H HTGE+P+KC+VC + F ++ +L H R HTGEKPYKC+ CG+ F+ ++ L+ H+ +H E+PFKCD C+K F ++S+L+ H +HT EKP+KCD C K F + + L+ H
Sbjct: 407 VCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVH 645 HSP 3 Score: 246.899 bits (629), Expect = 5.637e-73 Identity = 122/248 (49.19%), Postives = 160/248 (64.52%), Query Frame = 2
Query: 212 CGKEFTASSHSNNNLLVQTKMKSFNCNICTKEFTRRSSFIDHFRIHTGEKPNKCDVCGKGFNQSGNLQTHLRIHTGEKPYKCDLCHKEFNDVRNFKRHLRIHTGEKPFKCNVCDKQFSESNHLKRHLLSHTGERPFKCDVCKRDFRYAAHLKEHLRTHTGEKPYKCDVCGRTFTTSTTLRKHKIIHNSERPFKCDVCEKSFKRSSYLKRHAFIHT-EKPFKCDVCEKRFLRLNYLKTHIASSHKDESP 952
CGK F+ S+ N + V T K + C +C K FT+RS H RIHTGEKP KC CGK F+ S NL TH R+HT EKPYKCD C K F+ N H R+HTGEKP+KC C K FS ++ + H HTGE+PF+C+VC + F +++ + H R HTGEKPYKC+VCG+ F S L H+ +H E+P+KC+ C K F ++S L+ H +HT EKPFKCD C+KRF + ++L+ H H E P
Sbjct: 380 CGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAH-QRVHTGEKP 626 HSP 4 Score: 239.58 bits (610), Expect = 2.953e-70 Identity = 113/229 (49.34%), Postives = 155/229 (67.69%), Query Frame = 2
Query: 212 CGKEFTASSHSNNNLLVQTKMKSFNCNICTKEFTRRSSFIDHFRIHTGEKPNKCDVCGKGFNQSGNLQTHLRIHTGEKPYKCDLCHKEFNDVRNFKRHLRIHTGEKPFKCNVCDKQFSESNHLKRHLLSHTGERPFKCDVCKRDFRYAAHLKEHLRTHTGEKPYKCDVCGRTFTTSTTLRKHKIIHNSERPFKCDVCEKSFKRSSYLKRHAFIHT-EKPFKCDVCEKRF 895
CGK F+ SS+ + V T K + C+ C K F + S H IHTGEKP +CD CGKGF++S +L H R+HTGEKPYKC++C K F + + H RIHTGEKP+KC C K+FS S++L H HT E+P+KCD C + F + +L H R HTGEKPYKC+ CG+ F+++++ + H+ +H E+PF+C+VC K F +SSY + H +HT EKP+KC+VC KRF
Sbjct: 324 CGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRF 552 HSP 5 Score: 229.565 bits (584), Expect = 1.128e-66 Identity = 103/216 (47.69%), Postives = 143/216 (66.20%), Query Frame = 2
Query: 209 VCGKEFTASSHSNNNLLVQTKMKSFNCNICTKEFTRRSSFIDHFRIHTGEKPNKCDVCGKGFNQSGNLQTHLRIHTGEKPYKCDLCHKEFNDVRNFKRHLRIHTGEKPFKCNVCDKQFSESNHLKRHLLSHTGERPFKCDVCKRDFRYAAHLKEHLRTHTGEKPYKCDVCGRTFTTSTTLRKHKIIHNSERPFKCDVCEKSFKRSSYLKRHAFIHT 856
VCGK F+ SS+ + V T K + C +C K F + +H R+HTGEKP KC+ CGKGF+Q+ NLQ H +HTGEKP+KCD C K F+ + + H R+HTGEKP+KC+ C K FS+ ++L+ H + HTGE+PFKC+ C ++F ++A L H R HTGEKPY C CG+ F+ ++ H+ +H ERP+ CDVC K F + S+L H +HT
Sbjct: 519 VCGKGFSQSSYFQAHQRVHTGEKPYKCEVCGKRFNWSLNLHNHQRVHTGEKPYKCEECGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQRVHT 734 HSP 6 Score: 224.557 bits (571), Expect = 8.690e-65 Identity = 110/232 (47.41%), Postives = 148/232 (63.79%), Query Frame = 2
Query: 260 VQTKMKSFNCNICTKEFTRRSSFIDHFRIHTGEKPNKCDVCGKGFNQSGNLQTHLRIHTGEKPYKCDLCHKEFNDVRNFKRHLRIHTGEKPFKCNVCDKQFSESNHLKRHLLSHTGERPFKCDVCKRDFRYAAHLKEHLRTHTGEKPYKCDVCGRTFTTSTTLRKHKIIHNSERPFKCDVCEKSFKRSSYLKRHAFIHT-EKPFKCDVCEKRFLRLNYLKTHIASSHKDESP 952
V+T K + C+ C K F++ S+ H R+HTGEKP C CGK FNQS +L HL IHTGEKPY+CD C K F+ + H R+HTGEKP+KC VC K F++ +HL+ H HTGE+P+KC C + F +++L H R HT EKPYKCD CG+ F+ S L H+ +H E+P+KC+ C K F +S + H +HT EKPF+C+VC K F + +Y + H H E P
Sbjct: 312 VRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSHQRVHTGEKPFRCNVCGKGFSQSSYFQAH-QRVHTGEKP 542 HSP 7 Score: 206.453 bits (524), Expect = 2.518e-58 Identity = 113/260 (43.46%), Postives = 147/260 (56.54%), Query Frame = 2
Query: 212 CGKEFTASSHSNNNLLVQTKMKSFNCNICTKEFTRRSSFIDHFRIHTGEKPNKCDVCGKGFNQSGNLQTHLRIHTGEKPYKCDLCHKEFNDVRNFKRHLRIHTGEKPFKCNVCDKQFSESNHLKRHLLSHTGERPFKCDVCKRDFRYAAHLKEHLRTHTGEKPYKCDVCGRTFTTSTTLRKHKIIHNSERPFKCDVCEKSFKRSSYLKRHAFIHT-EKPFKCDVCEKRFLRLNYLKTHIASSHKDESPPNTNLAEKDLEK 988
C + F SS + V KS C+ K+ + S + TG+K C CGKGF+QS NLQTH R+HTGEKPY C C K FN + HL IHTGEKP++C+ C K FS S L H HTGE+P+KC+VC + F +HL+ H R HTGEKPYKC CG+ F+ S+ L H+ +H E+P+KCD C K F S L H +HT EKP+KC+ C K F + ++H H E P N+ K +
Sbjct: 268 CEEAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSHQRVHTGEKPYKCEECGKGFSSASSFQSH-QRVHTGEKPFRCNVCGKGFSQ 526 HSP 8 Score: 179.874 bits (455), Expect = 3.223e-49 Identity = 97/232 (41.81%), Postives = 131/232 (56.47%), Query Frame = 2
Query: 260 VQTKMKSFNCNICTKEFTRRSSFIDHFRIHTGEKPNKCDVCGKGFNQSGNLQTHLRIHTGEKPYKCDLCHKEFNDVRNFKRHLRIHTGEKPFKCNVCDKQFSESNHLKRHLLSHTGERPFKCDVCKRDFRYAAHLKEHLRTHTGEKPYKCDVCGRTFTTSTTLRKHKIIHNSERPFKCDVCEKSFKRSSYLKRHAFIHT-EKPFKCDVCEKRFLRLNYLKTHIASSHKDESP 952
+ T K++ N C + F SS H ++H G+K C K + S + + TG+K Y C C K F+ N + H R+HTGEKP+ C+ C K F++S+HL HL HTGE+P++CD C + F + L H R HTGEKPYKC+VCG+ FT + L+ H+ IH E+P+KC C K F SS L H +HT EKP+KCD C K F L +H H E P
Sbjct: 256 IHTGQKTYQGNECEEAFNDSSSLELHKQVHLGKKSPACSTHEKDTSYSSGIPVQQSVRTGKKRYWCHECGKGFSQSSNLQTHQRVHTGEKPYTCHECGKSFNQSSHLYAHLPIHTGEKPYRCDSCGKGFSRSTDLNIHCRVHTGEKPYKCEVCGKGFTQRSHLQAHERIHTGEKPYKCGDCGKRFSCSSNLHTHQRVHTEEKPYKCDECGKCFSLSFNLHSH-QRVHTGEKP 486 HSP 9 Score: 166.392 bits (420), Expect = 1.443e-44 Identity = 80/160 (50.00%), Postives = 100/160 (62.50%), Query Frame = 2
Query: 212 CGKEFTASSHSNNNLLVQTKMKSFNCNICTKEFTRRSSFIDHFRIHTGEKPNKCDVCGKGFNQSGNLQTHLRIHTGEKPYKCDLCHKEFNDVRNFKRHLRIHTGEKPFKCNVCDKQFSESNHLKRHLLSHTGERPFKCDVCKRDFRYAAHLKEHLRTHTG 691
CGK F+ +S+ + V T K F C+ C K F++ S H R+HTGEKP KCD CGK F+Q NLQ H IHTGEKP+KC+ C KEF+ H R+HTGEKP+ C C K FS+++H H HTGERP+ CDVC + F +HL H R HTG
Sbjct: 576 CGKGFSQASNLQAHQSVHTGEKPFKCDACQKRFSQASHLQAHQRVHTGEKPYKCDTCGKAFSQRSNLQVHQIIHTGEKPFKCEECGKEFSWSAGLSAHQRVHTGEKPYTCQQCGKGFSQASHFHTHQRVHTGERPYICDVCCKGFSQRSHLIYHQRVHTG 735 The following BLAST results are available for this feature:
BLAST of TCONS_00028281 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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