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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028282 ID=TCONS_00028282|Name=TCONS_00028282|organism=Clytia hemisphaerica|type=transcript|length=1797bp TTCAGATAaatgaaatttgtaaaaataagaaaatacaaagaaaatacaaa GAGTTTATCAATTCCATTATGGTGGAGAGTTATTTTGAATCAAAAGCAAA TACAATTAACAACCCAAGCTGACTATCGCGATGTTTCGACCAGTACATGT AACGAATCTTTTGTATTATGATGAGTGAACTAacctttcaactgcaattg aacTTTGGACATCACCTTGTGGGACCCCAATGTTTGGTGCACATGCTGAA GTTTGATGTAAATTGCTCTTGGCACAACTTGAGTGCGAAATGGGACACTG TCTGTCTTGGTAGTTTGATGGACGATTACAGATTGTATAAATGAAATGTA ATGTTGATTGCAGCAACCCATATCACGTGACCTACATCTCCGATATATGA CTGATGGATAATGATGTCaccttttgaaaaatcaatttctcgTTTGAAAT ATGTATTGGGTCTCTTTTTTGGTGGTTTGACTGATGGTGATTCATTGTCT GATTGCATGATCAATACCACACCTGGCGCTGATTCTTGCAACGATTCATG CAACAAATCTTTGATTAGCAGATTTTCATTGCACGTGATTAGGTTGAGTG TTTGAAGTTGGATATAGAATGTAATGGCTCGTTCTTGATGTCACTGGAGT GCAAAATGGTACACACTGTGTGTCTTGCAGTTTTATTGGAGGGTTACAGA TTGTGTGGTTGAATGGAACATGTACAATACTGAAGTCAAGTGTGAATATG GATGGCTGACGCTGGTTTGATTGAGTAGTGGTGTGAAGTGGAGTGGTTGA ATATTgatcagtgctgcaaataaggaatTTCAAGTTGGCCGGTGATTACT CAATCAGAAAGCACTAATAATGAAACCATCAAAATTTCACGGGAAAAAAC ACACATATTAGCTTAAAAATGGCCAGTGATTACCGGTCACTGgacgttat ttgcagcactgattGATCGTTTATAAATTTCATCAATGCTAGAACGTGGT GATGGAATATCCAATGTATGTTATGGCCTTCCATAATTGCTTGGTGAATG GTGGGATACGCAGACAACTTGCTCCTTTTGGGTGATGCTCGCAATGCTCG ACGATAAGTTTAACAGTAGTCCTTCGTATTAGTACtgaatttctttctta ttaAATTCACTCGTCACTTGAGAGTCATTTGAATGTTGTCTAGTTACCGG CGACTGAGCACTTCAACGTTGATCTTTGATCGTTTTTGTGCCTATCAAGA AAAGCTCTTCAGCTTAAAATAGACAGGGACTTCCTCGGGTCAGGGTTTCA TTGATAACATTCAAGAGGTTTTTCAAAGGCCCTTGCCAAGCCGTTTTGAA GTGATAGGGTGAAAGTTCTGGGGATTGTTAATTGTTGCTAAGCATGGTTA AGCGACgaagaaaacttttactactTGCACCTTCAAAAAACGAAACGCTA TTTTATTGGATAAAAACAGGTTATGAGGAGCCATAACGgtaatttcatca aaaagtgAGGCCCCCTCTGCTATTTGCTATTGCCACTATGTTTTATTTGG AAACATACTCAATAAATCTCGAAAAAGTTGAGTACCACCCGCTAAGGCTA TGGAAGTGTTGATACATTTTCACGGACTTCTTTCGAATTGAGTTAGTTAT TAAAGGGTTTTTACAAAATGTTGGCTCTTGCGATTTCCCTTTTAAAGGCA ACTTTAATAGatattgataaattttacaattatttatgaaattttataaa tttgaattttataattttgttgTCGGTATGGGCTTTTCCAGGTGTTT Run BLAST on NCBI transcript from alignment at sc0000672:154067..158789+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028282 ID=TCONS_00028282|Name=TCONS_00028282|organism=Clytia hemisphaerica|type=transcript|length=4723bp|location=Sequence derived from alignment at sc0000672:154067..158789+ (Clytia hemisphaerica) TTCAGATAaatgaaatttgtaaaaataagaaaatacaaagaaaatacaaa
GAGTTTATCAATTCCATTATGGTGGAGAGTTATTTTGAATCAAAAGCAAA
TACAGTAAGTTCTTTTTCTAGGTTTTGATAGTTATTGAATGTAGTTTTTA
TACGCCTTTAATCTGAAGTTGGGGGAGTTACATCCTAAAATTCTCCATAA
AAAGAAGGTGGCTGGAAGTAAACCACTTGTTTCTCATTATTAATTTACAT
GAATCTTTGGGGTACTTAAAACTCTTGGAGGGACCTAATATTTGCCCGGG
ACCTAAACCGTTCCATAGTGTATATAGGTAGAACACTCAGATACGGTACA
GTATGGTCGTGGGTTCGATCTCTTTCTGGGTCATACCCAAGACTCTAAAA
TAATACTTGATGACTCTGTTTAATTGCTCAGCAGTAATTACTAAGGATTT
CCAAcaactttttgtaattttgaatcTTATTCAATCCCAGTCGAAAATAC
TACAGGTATATCATGCATACAACATTGCAATATCTTCTAACATTACGTCA
TAGACGCAACAACATTCATTGCAATTACAAGCGTATTTTACGTCATTTAC
AACCAATCATCTACTGGGTCGATGGCGTAATGTCAGTTGACATAATGggg
catatcatgaatacacctGAAGTATTTATGATTGGGTTAACTTGTGAAAG
ATGCTACCGCTAGTCCACTCTGCTACCATCCCTTAGCGATTGTCTTTTTA
TTTAGATATTAGTGACggtaatattttttgtatttcctCCAGATTAACAA
CCCAAGCTAACTATCGCGATGTTTCGACCAGTATATGTAACGAATCTTTN
TTATGATTGGGTTAACTTGTGAAAGATGCTACCGCTAGTCCACTCTGCTA
CCATCCCTtagcgattttctttttatttagatattagtggtaatattttt
tgtatttcctCCAGATTAACAACCCAAGCTGACTATCGCGATGTTTCGAC
CAGTACATGTAACGAATCTTTTGTATTATGATGAGTGAACTAacctttca
actgcaattgaacTTTGGACATCACCTTGTGGGACCCCAATGTTTGGTAA
GAATAAGTTCAGACAGAAACAAGTttaattttctggtctgtaaattacca
CAACATGAATAAACTTGAGACACCCGCTCTATCAGCTTGAAATTTTGCCG
TGACCTGAGAAATCAATTTCTGAAATTAAGTAAGATTTGAAAACAATCTC
ATGTTTGATTTACGATCCAAGAAAGCTCCTAGAACATTCtggtctataaa
ataaattcgagaaaataaaaatgatggcacagcttttgaaatataaattt
tgaggCTTTTCGTATTCTGGTCTGCAAAACATTCTACATTTTCTTATCGG
AGCTCCCTTAAAAATAAAAGCTGCCGATTTTCAGTATCGCCAGGGTGACA
TAAGTAAATTGATAAGGTTAAGATTATTCTTTTAAAAGTAGTGCACGGTA
AAACTCTATAACATCGATGTTTTTAACTTTACCATTTTCAGGTGCACATG
CTGAAGTTTGATGTAAATTGCTCTTGGCACAACTTGAGTGCGAAATGGGA
CACTGTCTGTCTTGGTAGTTTGATGGACGATTACAGATTGTATAAATGAA
ATGTAATGTTGATTGCAGCAACCCATATCACGTGACCTACATCTCCGATA
TATGACTGATGGATAATGATGTCaccttttgaaaaatcaatttctcgTTT
GAAATATGTATTGGGTCTCTTTTTTGGTGGTTTGACTGATGGTGATTCAT
TGTCTGATTGCATGGTATGAAATTTATGTTATTGAACgcgttttaaaggt
tttgtttatcAGTTTTAATCTATAAGCTTTTTGATGTTGAATTGACacgg
agcaagattggtcagaaagaggaaaaacgaaaaatatttttgcttatatc
aggacaataaatattaaaaattttcgTCCGTCGGCCCAAACCATTGTGGC
GCCTCATTAGTCAGTATATCGTtgccctatcactttcaaagtggagccgT
GGCCCCtgtgaatcaatttttttggtgAATTATCTTAAAACGTTCTTTAT
CTGTAAAAATCTTTGACTTGTTAAGAACAGGTTGTTTTGCTATATCATCA
TTGACGCATGATCTCTCCCGTATTGTAGATTTCCAATAGCAAGGAGACCC
AGTCTTTTTAACATATTATTGacaatatttttacattttactcCAGATCA
ATACCACACCTGGCGCTGATTCTTGCAACGATTCATGCAACAAATCTTTG
ATTAGCAGATTTTCATTGCACGTGATTAGGTTGAGTGTTTGAAGTTGGAT
ATAGAATGTAATGGCTCGTTCTTGATGTCACTGGAGTGCAAAATGGTACA
CACTGTGTGTCTTGCAGTTTTATTGGAGGGTTACAGATTGTGTGGTTGAA
TGGTATGAAATTTATATTTGATTCATTGAATGTTTAGACCGGGCTTTTTT
TAGATTAGACCCCCTACCATAAAATCATATTATTCATAGTTCTGTTTCTG
TTCTCAAAGTTCAATGTTATatcaaattaaatgaaaaagtttCCTTCAGC
TTTAGGCACtgaaacaaaagagaaaaatagatGAGACTattgatacacgc
tttttttataagaatacttagtgtactttggatgagggtcaagtattctt
aaaaaattgccaaaattgagggtgaaatatgcttaacgtattcttacttt
tttagacttgacttttttacaaacatgagaaatgatcaattttgagagtt
ttggacttttgaatgaacatttggAGCTAAATGtacatttctgcctcaaa
gtttaaattcaagtctaacaaaggaagcagttttttctgttaaccaaata
caaaatgactgtattcttatcaaatctGAGAAACTCACCATAGAGGGTac
attcttagggtattctaaCGANGGACTGTATTTTTATCAAATCTGAGaaa
ctcaccctagagggtattcttagggtattcttacgatttggccaattttc
accctagtattcttatagaagatattcttataaaaaaaagtgtattccGT
CAGTAATCGACATTTTGACCATGCCCCATCTCATTTCCTATATcgaaatg
cttcgaaaaaacctAATAAACATTCACGTTAAGGGGCGAAACCTCATGCG
ACCATTTGGGAGTGCCTTAGGTTCCCCGAGTTCTTGCGCCCTTCGTATAG
CAGCTCCAAATATCGGCCGCTGGGGGATCACTGCAATTTACGAGAATTTT
TTACTCTTTTAGAGAGTCGATTTCGTACTTTTAGGACTGAGACTCAACTG
CTGTTctatggtttttgtacccctgtGAGAGACTTTCAAGGTtgtaaaaa
agggaaaaataccCGATTTATTTGTTCTTGCAGCCGACCTTCCAACAAGt
ttgtttaaattttatttccgtTGTTTATTTAATAATACATTCTACCCTTT
TTCTAGGAACATGTACAATACTGAAGTCAAGTGTGAATATGGATGGCTGA
CGCTGGTTTGATTGAGTAGTGGTGTGAAGTGGAGTGGTTGAATATTgatc
agtgctgcaaataaggaatTTCAAGTTGGCCGGTGATTACTCAATCAGAA
AGCACTAATAATGAAACCATCAAAATTTCACGGGAAAAAACACACATATT
AGCTTAAAAATGGCCAGTGATTACCGGTCACTGgacgttatttgcagcac
tgattGATCGTTTATAAATTTCATCAATGCTAGAACGTGGTGATGGAATA
TCCAATGTATGTTATGGCCTTCCATAATTGCTTGGTGAATGGTGGGATAC
GCAGACAACTTGCTCCTTTTGGGTGATGCTCGCAATGCTCGACGATAAGT
TTAACAGTAGTCCTTCGTATTAGTACtgaatttctttcttattaAATTCA
CTCGTCACTTGAGAGTCATTTGAATGTTGTCTAGTTACCGGCGACTGAGC
ACTTCAACGTTGATCTTTGATCGTTTTTGTGCCTATCAAGAAAAGCTCTT
CAGCTTAAAATAGACAGGGACTTCCTCGGGTCAGGGTTTCATTGATAACA
TTCAAGAGGTTTTTCAAAGGCCCTTGCCAAGCCGTTTTGAAGTGATAGGG
TGAAAGTTCTGGGGATTGTTAATTGTTGCTAAGCATGGTTAAGCGACgaa
gaaaacttttactactTGCACCTTCAAAAAACGAAACGCTATTTTATTGG
ATAAAAACAGGTTATGAGGAGCCATAACGgtaatttcatcaaaaagtgAG
GCCCCCTCTGCTATTTGCTATTGCCACTATGTTTTATTTGGAAACATACT
CAATAAATCTCGAAAAAGTTGAGTACCACCCGCTAAGGCTACTATGGAAG
TGTTGATACATACCCATTCGatctcgaaaaagtttttcgaTCTTTAAGAC
AATATTAAATCCATTAAAATTTGCAAAGTGAAACTAAGCCAGATTCAAAT
CCCTTCACGGACNCCCGCTAAGGCTATGGAAGTGTTGATACATTTTCACG
GACTTCTTTCGAATTGAGTTAGTTATTAAAGGGTTTTTACAAAATGTTGG
CTCTTGCGATTTCCCTTTTAAAGGCAACTTTAATAGatattgataaattt
tacaattatttatgaaattttataaatttgaattttataattttgttgTC
GGTATGGGCTTTTCCAGGTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00028282-exon-sc0000672-1491911889:154067..154170 | TCONS_00028282-exon-sc0000672-1491911889:154067..154170 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1510915933:154067..154170 | TCONS_00028282-exon-sc0000672-1510915933:154067..154170 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1575043694:154067..154170 | TCONS_00028282-exon-sc0000672-1575043694:154067..154170 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1491911889:155031..155162 | TCONS_00028282-exon-sc0000672-1491911889:155031..155162 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1510915933:155031..155162 | TCONS_00028282-exon-sc0000672-1510915933:155031..155162 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1575043694:155031..155162 | TCONS_00028282-exon-sc0000672-1575043694:155031..155162 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1491911889:155608..155880 | TCONS_00028282-exon-sc0000672-1491911889:155608..155880 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1510915933:155608..155880 | TCONS_00028282-exon-sc0000672-1510915933:155608..155880 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1575043694:155608..155880 | TCONS_00028282-exon-sc0000672-1575043694:155608..155880 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1491911889:156313..156518 | TCONS_00028282-exon-sc0000672-1491911889:156313..156518 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1510915933:156313..156518 | TCONS_00028282-exon-sc0000672-1510915933:156313..156518 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1575043694:156313..156518 | TCONS_00028282-exon-sc0000672-1575043694:156313..156518 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1491911889:157573..158453 | TCONS_00028282-exon-sc0000672-1491911889:157573..158453 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1510915933:157573..158453 | TCONS_00028282-exon-sc0000672-1510915933:157573..158453 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1575043694:157573..158453 | TCONS_00028282-exon-sc0000672-1575043694:157573..158453 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1491911889:158589..158789 | TCONS_00028282-exon-sc0000672-1491911889:158589..158789 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1510915933:158589..158789 | TCONS_00028282-exon-sc0000672-1510915933:158589..158789 | Clytia hemisphaerica | exon |
TCONS_00028282-exon-sc0000672-1575043694:158589..158789 | TCONS_00028282-exon-sc0000672-1575043694:158589..158789 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000672 | supercontig | sc0000672:154067..158789 + |
Blast
The following BLAST results are available for this feature:
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