TCONS_00028282 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028282
Unique NameTCONS_00028282
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028282 ID=TCONS_00028282|Name=TCONS_00028282|organism=Clytia hemisphaerica|type=transcript|length=1797bp
TTCAGATAaatgaaatttgtaaaaataagaaaatacaaagaaaatacaaa
GAGTTTATCAATTCCATTATGGTGGAGAGTTATTTTGAATCAAAAGCAAA
TACAATTAACAACCCAAGCTGACTATCGCGATGTTTCGACCAGTACATGT
AACGAATCTTTTGTATTATGATGAGTGAACTAacctttcaactgcaattg
aacTTTGGACATCACCTTGTGGGACCCCAATGTTTGGTGCACATGCTGAA
GTTTGATGTAAATTGCTCTTGGCACAACTTGAGTGCGAAATGGGACACTG
TCTGTCTTGGTAGTTTGATGGACGATTACAGATTGTATAAATGAAATGTA
ATGTTGATTGCAGCAACCCATATCACGTGACCTACATCTCCGATATATGA
CTGATGGATAATGATGTCaccttttgaaaaatcaatttctcgTTTGAAAT
ATGTATTGGGTCTCTTTTTTGGTGGTTTGACTGATGGTGATTCATTGTCT
GATTGCATGATCAATACCACACCTGGCGCTGATTCTTGCAACGATTCATG
CAACAAATCTTTGATTAGCAGATTTTCATTGCACGTGATTAGGTTGAGTG
TTTGAAGTTGGATATAGAATGTAATGGCTCGTTCTTGATGTCACTGGAGT
GCAAAATGGTACACACTGTGTGTCTTGCAGTTTTATTGGAGGGTTACAGA
TTGTGTGGTTGAATGGAACATGTACAATACTGAAGTCAAGTGTGAATATG
GATGGCTGACGCTGGTTTGATTGAGTAGTGGTGTGAAGTGGAGTGGTTGA
ATATTgatcagtgctgcaaataaggaatTTCAAGTTGGCCGGTGATTACT
CAATCAGAAAGCACTAATAATGAAACCATCAAAATTTCACGGGAAAAAAC
ACACATATTAGCTTAAAAATGGCCAGTGATTACCGGTCACTGgacgttat
ttgcagcactgattGATCGTTTATAAATTTCATCAATGCTAGAACGTGGT
GATGGAATATCCAATGTATGTTATGGCCTTCCATAATTGCTTGGTGAATG
GTGGGATACGCAGACAACTTGCTCCTTTTGGGTGATGCTCGCAATGCTCG
ACGATAAGTTTAACAGTAGTCCTTCGTATTAGTACtgaatttctttctta
ttaAATTCACTCGTCACTTGAGAGTCATTTGAATGTTGTCTAGTTACCGG
CGACTGAGCACTTCAACGTTGATCTTTGATCGTTTTTGTGCCTATCAAGA
AAAGCTCTTCAGCTTAAAATAGACAGGGACTTCCTCGGGTCAGGGTTTCA
TTGATAACATTCAAGAGGTTTTTCAAAGGCCCTTGCCAAGCCGTTTTGAA
GTGATAGGGTGAAAGTTCTGGGGATTGTTAATTGTTGCTAAGCATGGTTA
AGCGACgaagaaaacttttactactTGCACCTTCAAAAAACGAAACGCTA
TTTTATTGGATAAAAACAGGTTATGAGGAGCCATAACGgtaatttcatca
aaaagtgAGGCCCCCTCTGCTATTTGCTATTGCCACTATGTTTTATTTGG
AAACATACTCAATAAATCTCGAAAAAGTTGAGTACCACCCGCTAAGGCTA
TGGAAGTGTTGATACATTTTCACGGACTTCTTTCGAATTGAGTTAGTTAT
TAAAGGGTTTTTACAAAATGTTGGCTCTTGCGATTTCCCTTTTAAAGGCA
ACTTTAATAGatattgataaattttacaattatttatgaaattttataaa
tttgaattttataattttgttgTCGGTATGGGCTTTTCCAGGTGTTT
Run BLAST on NCBI

transcript from alignment at sc0000672:154067..158789+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028282 ID=TCONS_00028282|Name=TCONS_00028282|organism=Clytia hemisphaerica|type=transcript|length=4723bp|location=Sequence derived from alignment at sc0000672:154067..158789+ (Clytia hemisphaerica)
TTCAGATAaatgaaatttgtaaaaataagaaaatacaaagaaaatacaaa
GAGTTTATCAATTCCATTATGGTGGAGAGTTATTTTGAATCAAAAGCAAA
TACAGTAAGTTCTTTTTCTAGGTTTTGATAGTTATTGAATGTAGTTTTTA
TACGCCTTTAATCTGAAGTTGGGGGAGTTACATCCTAAAATTCTCCATAA
AAAGAAGGTGGCTGGAAGTAAACCACTTGTTTCTCATTATTAATTTACAT
GAATCTTTGGGGTACTTAAAACTCTTGGAGGGACCTAATATTTGCCCGGG
ACCTAAACCGTTCCATAGTGTATATAGGTAGAACACTCAGATACGGTACA
GTATGGTCGTGGGTTCGATCTCTTTCTGGGTCATACCCAAGACTCTAAAA
TAATACTTGATGACTCTGTTTAATTGCTCAGCAGTAATTACTAAGGATTT
CCAAcaactttttgtaattttgaatcTTATTCAATCCCAGTCGAAAATAC
TACAGGTATATCATGCATACAACATTGCAATATCTTCTAACATTACGTCA
TAGACGCAACAACATTCATTGCAATTACAAGCGTATTTTACGTCATTTAC
AACCAATCATCTACTGGGTCGATGGCGTAATGTCAGTTGACATAATGggg
catatcatgaatacacctGAAGTATTTATGATTGGGTTAACTTGTGAAAG
ATGCTACCGCTAGTCCACTCTGCTACCATCCCTTAGCGATTGTCTTTTTA
TTTAGATATTAGTGACggtaatattttttgtatttcctCCAGATTAACAA
CCCAAGCTAACTATCGCGATGTTTCGACCAGTATATGTAACGAATCTTTN
TTATGATTGGGTTAACTTGTGAAAGATGCTACCGCTAGTCCACTCTGCTA
CCATCCCTtagcgattttctttttatttagatattagtggtaatattttt
tgtatttcctCCAGATTAACAACCCAAGCTGACTATCGCGATGTTTCGAC
CAGTACATGTAACGAATCTTTTGTATTATGATGAGTGAACTAacctttca
actgcaattgaacTTTGGACATCACCTTGTGGGACCCCAATGTTTGGTAA
GAATAAGTTCAGACAGAAACAAGTttaattttctggtctgtaaattacca
CAACATGAATAAACTTGAGACACCCGCTCTATCAGCTTGAAATTTTGCCG
TGACCTGAGAAATCAATTTCTGAAATTAAGTAAGATTTGAAAACAATCTC
ATGTTTGATTTACGATCCAAGAAAGCTCCTAGAACATTCtggtctataaa
ataaattcgagaaaataaaaatgatggcacagcttttgaaatataaattt
tgaggCTTTTCGTATTCTGGTCTGCAAAACATTCTACATTTTCTTATCGG
AGCTCCCTTAAAAATAAAAGCTGCCGATTTTCAGTATCGCCAGGGTGACA
TAAGTAAATTGATAAGGTTAAGATTATTCTTTTAAAAGTAGTGCACGGTA
AAACTCTATAACATCGATGTTTTTAACTTTACCATTTTCAGGTGCACATG
CTGAAGTTTGATGTAAATTGCTCTTGGCACAACTTGAGTGCGAAATGGGA
CACTGTCTGTCTTGGTAGTTTGATGGACGATTACAGATTGTATAAATGAA
ATGTAATGTTGATTGCAGCAACCCATATCACGTGACCTACATCTCCGATA
TATGACTGATGGATAATGATGTCaccttttgaaaaatcaatttctcgTTT
GAAATATGTATTGGGTCTCTTTTTTGGTGGTTTGACTGATGGTGATTCAT
TGTCTGATTGCATGGTATGAAATTTATGTTATTGAACgcgttttaaaggt
tttgtttatcAGTTTTAATCTATAAGCTTTTTGATGTTGAATTGACacgg
agcaagattggtcagaaagaggaaaaacgaaaaatatttttgcttatatc
aggacaataaatattaaaaattttcgTCCGTCGGCCCAAACCATTGTGGC
GCCTCATTAGTCAGTATATCGTtgccctatcactttcaaagtggagccgT
GGCCCCtgtgaatcaatttttttggtgAATTATCTTAAAACGTTCTTTAT
CTGTAAAAATCTTTGACTTGTTAAGAACAGGTTGTTTTGCTATATCATCA
TTGACGCATGATCTCTCCCGTATTGTAGATTTCCAATAGCAAGGAGACCC
AGTCTTTTTAACATATTATTGacaatatttttacattttactcCAGATCA
ATACCACACCTGGCGCTGATTCTTGCAACGATTCATGCAACAAATCTTTG
ATTAGCAGATTTTCATTGCACGTGATTAGGTTGAGTGTTTGAAGTTGGAT
ATAGAATGTAATGGCTCGTTCTTGATGTCACTGGAGTGCAAAATGGTACA
CACTGTGTGTCTTGCAGTTTTATTGGAGGGTTACAGATTGTGTGGTTGAA
TGGTATGAAATTTATATTTGATTCATTGAATGTTTAGACCGGGCTTTTTT
TAGATTAGACCCCCTACCATAAAATCATATTATTCATAGTTCTGTTTCTG
TTCTCAAAGTTCAATGTTATatcaaattaaatgaaaaagtttCCTTCAGC
TTTAGGCACtgaaacaaaagagaaaaatagatGAGACTattgatacacgc
tttttttataagaatacttagtgtactttggatgagggtcaagtattctt
aaaaaattgccaaaattgagggtgaaatatgcttaacgtattcttacttt
tttagacttgacttttttacaaacatgagaaatgatcaattttgagagtt
ttggacttttgaatgaacatttggAGCTAAATGtacatttctgcctcaaa
gtttaaattcaagtctaacaaaggaagcagttttttctgttaaccaaata
caaaatgactgtattcttatcaaatctGAGAAACTCACCATAGAGGGTac
attcttagggtattctaaCGANGGACTGTATTTTTATCAAATCTGAGaaa
ctcaccctagagggtattcttagggtattcttacgatttggccaattttc
accctagtattcttatagaagatattcttataaaaaaaagtgtattccGT
CAGTAATCGACATTTTGACCATGCCCCATCTCATTTCCTATATcgaaatg
cttcgaaaaaacctAATAAACATTCACGTTAAGGGGCGAAACCTCATGCG
ACCATTTGGGAGTGCCTTAGGTTCCCCGAGTTCTTGCGCCCTTCGTATAG
CAGCTCCAAATATCGGCCGCTGGGGGATCACTGCAATTTACGAGAATTTT
TTACTCTTTTAGAGAGTCGATTTCGTACTTTTAGGACTGAGACTCAACTG
CTGTTctatggtttttgtacccctgtGAGAGACTTTCAAGGTtgtaaaaa
agggaaaaataccCGATTTATTTGTTCTTGCAGCCGACCTTCCAACAAGt
ttgtttaaattttatttccgtTGTTTATTTAATAATACATTCTACCCTTT
TTCTAGGAACATGTACAATACTGAAGTCAAGTGTGAATATGGATGGCTGA
CGCTGGTTTGATTGAGTAGTGGTGTGAAGTGGAGTGGTTGAATATTgatc
agtgctgcaaataaggaatTTCAAGTTGGCCGGTGATTACTCAATCAGAA
AGCACTAATAATGAAACCATCAAAATTTCACGGGAAAAAACACACATATT
AGCTTAAAAATGGCCAGTGATTACCGGTCACTGgacgttatttgcagcac
tgattGATCGTTTATAAATTTCATCAATGCTAGAACGTGGTGATGGAATA
TCCAATGTATGTTATGGCCTTCCATAATTGCTTGGTGAATGGTGGGATAC
GCAGACAACTTGCTCCTTTTGGGTGATGCTCGCAATGCTCGACGATAAGT
TTAACAGTAGTCCTTCGTATTAGTACtgaatttctttcttattaAATTCA
CTCGTCACTTGAGAGTCATTTGAATGTTGTCTAGTTACCGGCGACTGAGC
ACTTCAACGTTGATCTTTGATCGTTTTTGTGCCTATCAAGAAAAGCTCTT
CAGCTTAAAATAGACAGGGACTTCCTCGGGTCAGGGTTTCATTGATAACA
TTCAAGAGGTTTTTCAAAGGCCCTTGCCAAGCCGTTTTGAAGTGATAGGG
TGAAAGTTCTGGGGATTGTTAATTGTTGCTAAGCATGGTTAAGCGACgaa
gaaaacttttactactTGCACCTTCAAAAAACGAAACGCTATTTTATTGG
ATAAAAACAGGTTATGAGGAGCCATAACGgtaatttcatcaaaaagtgAG
GCCCCCTCTGCTATTTGCTATTGCCACTATGTTTTATTTGGAAACATACT
CAATAAATCTCGAAAAAGTTGAGTACCACCCGCTAAGGCTACTATGGAAG
TGTTGATACATACCCATTCGatctcgaaaaagtttttcgaTCTTTAAGAC
AATATTAAATCCATTAAAATTTGCAAAGTGAAACTAAGCCAGATTCAAAT
CCCTTCACGGACNCCCGCTAAGGCTATGGAAGTGTTGATACATTTTCACG
GACTTCTTTCGAATTGAGTTAGTTATTAAAGGGTTTTTACAAAATGTTGG
CTCTTGCGATTTCCCTTTTAAAGGCAACTTTAATAGatattgataaattt
tacaattatttatgaaattttataaatttgaattttataattttgttgTC
GGTATGGGCTTTTCCAGGTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016021XLOC_016021Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028282-exon-sc0000672-1491911889:154067..154170TCONS_00028282-exon-sc0000672-1491911889:154067..154170Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1510915933:154067..154170TCONS_00028282-exon-sc0000672-1510915933:154067..154170Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1575043694:154067..154170TCONS_00028282-exon-sc0000672-1575043694:154067..154170Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1491911889:155031..155162TCONS_00028282-exon-sc0000672-1491911889:155031..155162Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1510915933:155031..155162TCONS_00028282-exon-sc0000672-1510915933:155031..155162Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1575043694:155031..155162TCONS_00028282-exon-sc0000672-1575043694:155031..155162Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1491911889:155608..155880TCONS_00028282-exon-sc0000672-1491911889:155608..155880Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1510915933:155608..155880TCONS_00028282-exon-sc0000672-1510915933:155608..155880Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1575043694:155608..155880TCONS_00028282-exon-sc0000672-1575043694:155608..155880Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1491911889:156313..156518TCONS_00028282-exon-sc0000672-1491911889:156313..156518Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1510915933:156313..156518TCONS_00028282-exon-sc0000672-1510915933:156313..156518Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1575043694:156313..156518TCONS_00028282-exon-sc0000672-1575043694:156313..156518Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1491911889:157573..158453TCONS_00028282-exon-sc0000672-1491911889:157573..158453Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1510915933:157573..158453TCONS_00028282-exon-sc0000672-1510915933:157573..158453Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1575043694:157573..158453TCONS_00028282-exon-sc0000672-1575043694:157573..158453Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1491911889:158589..158789TCONS_00028282-exon-sc0000672-1491911889:158589..158789Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1510915933:158589..158789TCONS_00028282-exon-sc0000672-1510915933:158589..158789Clytia hemisphaericaexon
TCONS_00028282-exon-sc0000672-1575043694:158589..158789TCONS_00028282-exon-sc0000672-1575043694:158589..158789Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000672supercontigsc0000672:154067..158789 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.84219	1.97189	1.22013	1.28022	1.57601	1.29557	1.44544	1.59286	1.26379	1.19766	1.15586	1.01539	0.598731	0.709807	0.991517	0.857686	1.4088	1.38584	0.54623	0.764965	1.86144	1.22034	1.81873	1.8398	1.15136	0.87771	0.804778	0.45771	1.26464	1.51585
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028282 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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