TCONS_00028291 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028291
Unique NameTCONS_00028291
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length718

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028291 ID=TCONS_00028291|Name=TCONS_00028291|organism=Clytia hemisphaerica|type=transcript|length=718bp
GAAAAATCTTATAATTTATTATGAGAATggctttcaaaatattttagtcA
TTAAATTATTTGATTCCTCCTATAGTTTATAGAAAACAAACTCGTTGAAG
AAAGTaaaatgtttgaagaaaaagaaaacatcgAAGTCAAATCATACGAG
TGTAATGTTTGTGGGAAAGTCTTTCGCCTTGCATCTTATTTGAGAAAACA
TCTTAATATTCATGCTGGGTCTTTTAAATGTGATGAGTGTGGAAAAGTTT
ATCAATCTGCATATACCTTAAAGAGACATGAAACTCTTCATAACAAAGAG
AAGAAGCACCTTTATACTCATGCAAAAAAGAAATGCAGTGAATGCAATGT
TTGTGGAAATGTGTTTACAATAAAATATCGCTATCCACTTCATACCAAGA
AACCCTCTCAATTTGATGTTTGTGGAAATTGTCTTGTTGATAAAAAAGAT
GATTTACAAACCAATGTTACTTCTAAAGAGGAGGATCTCCATCCGTATAA
ATGTGATGTTTgtagaaaatattttacagattctgttgaatttcaattgC
ACATTCGTGAACATTGGTAGTTTCGATTTGCACTTACTTAACCAACTTTT
CTATTAGGTTTATTAATTTCATTCAATTTGTTATAGTTTTCatcaataat
tttctttgttatATTCTTTTGGCTTTTATAATTATTATTGGTCGTCGTAA
AGTGATCTGAAACTCAGC
Run BLAST on NCBI

protein sequence of TCONS_00028291-protein

>TCONS_00028291-protein ID=TCONS_00028291-protein|Name=TCONS_00028291-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
MFEEKENIEVKSYECNVCGKVFRLASYLRKHLNIHAGSFKCDECGKVYQS
AYTLKRHETLHNKEKKHLYTHAKKKCSECNVCGNVFTIKYRYPLHTKKPS
QFDVCGNCLVDKKDDLQTNVTSKEEDLHPYKCDVCRKYFTDSVEFQLHIR
EHW
Run BLAST on NCBI

transcript from alignment at sc0000672:175391..176108

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028291 ID=TCONS_00028291|Name=TCONS_00028291|organism=Clytia hemisphaerica|type=transcript|length=718bp|location=Sequence derived from alignment at sc0000672:175391..176108 (Clytia hemisphaerica)
GCTGAGTTTCAGATCACTTTACGACGACCAATAATAATTATAAAAGCCAA
AAGAATataacaaagaaaattattgatGAAAACTATAACAAATTGAATGA
AATTAATAAACCTAATAGAAAAGTTGGTTAAGTAAGTGCAAATCGAAACT
ACCAATGTTCACGAATGTGcaattgaaattcaacagaatctgtaaaatat
tttctacAAACATCACATTTATACGGATGGAGATCCTCCTCTTTAGAAGT
AACATTGGTTTGTAAATCATCTTTTTTATCAACAAGACAATTTCCACAAA
CATCAAATTGAGAGGGTTTCTTGGTATGAAGTGGATAGCGATATTTTATT
GTAAACACATTTCCACAAACATTGCATTCACTGCATTTCTTTTTTGCATG
AGTATAAAGGTGCTTCTTCTCTTTGTTATGAAGAGTTTCATGTCTCTTTA
AGGTATATGCAGATTGATAAACTTTTCCACACTCATCACATTTAAAAGAC
CCAGCATGAATATTAAGATGTTTTCTCAAATAAGATGCAAGGCGAAAGAC
TTTCCCACAAACATTACACTCGTATGATTTGACTTcgatgttttcttttt
cttcaaacattttACTTTCTTCAACGAGTTTGTTTTCTATAAACTATAGG
AGGAATCAAATAATTTAATgactaaaatattttgaaagccATTCTCATAA
TAAATTATAAGATTTTTC

Coding sequence (CDS) from alignment at sc0000672:175391..176108

>TCONS_00028291 ID=TCONS_00028291|Name=TCONS_00028291|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at sc0000672:175391..176108 (Clytia hemisphaerica)
CTACCAATGTTCACGAATGTGcaattgaaattcaacagaatctgtaaaat
attttctacAAACATCACATTTATACGGATGGAGATCCTCCTCTTTAGAA
GTAACATTGGTTTGTAAATCATCTTTTTTATCAACAAGACAATTTCCACA
AACATCAAATTGAGAGGGTTTCTTGGTATGAAGTGGATAGCGATATTTTA
TTGTAAACACATTTCCACAAACATTGCATTCACTGCATTTCTTTTTTGCA
TGAGTATAAAGGTGCTTCTTCTCTTTGTTATGAAGAGTTTCATGTCTCTT
TAAGGTATATGCAGATTGATAAACTTTTCCACACTCATCACATTTAAAAG
ACCCAGCATGAATATTAAGATGTTTTCTCAAATAAGATGCAAGGCGAAAG
ACTTTCCCACAAACATTACACTCGTATGATTTGACTTcgatgttttcttt
ttcttcaaacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016030XLOC_016030Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028291-proteinTCONS_00028291-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028291-exon-sc0000672-1491911889:175391..176108TCONS_00028291-exon-sc0000672-1491911889:175391..176108Clytia hemisphaericaexon
TCONS_00028291-exon-sc0000672-1510915933:175391..176108TCONS_00028291-exon-sc0000672-1510915933:175391..176108Clytia hemisphaericaexon
TCONS_00028291-exon-sc0000672-1575043694:175391..176108TCONS_00028291-exon-sc0000672-1575043694:175391..176108Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000672supercontigsc0000672:175391..176108 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.487906	0.815632	0.394594	0.463259	2.0679	1.63408	1.61301	1.59397	0.469885	0.436521	1.48294	0.742726	0.417203	0.48141	0.554098	0.297316	0.261621	0.429045	0.518655	0.465201	1.4826	1.38058	1.27868	0.799224	2.39471	3.80693	0.860164	1.12199	0.464175	0.551741
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
Blast
[Close]
BLAST of TCONS_00028291 vs. Swiss-Prot (Human)
Match: ZN836 (Zinc finger protein 836 OS=Homo sapiens GN=ZNF836 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.580e-18
Identity = 60/173 (34.68%), Postives = 80/173 (46.24%), Query Frame = 1 
Query:  139 KSYECNVCGKVFRLASYLRKHLNIHAG--SFKCDECGKVYQSAYTLKRHETLHNKEK------------------KHLYTHAKKKCSECNVCGNVFTIKYRYPLHTK-----KPSQFDVCG------NCLVDKKDDLQTNVTSKEEDLHPYKCDVCRKYFTDSVEFQLHIREH 564
            K Y+CN CGKVF   S+L  H  IH G   +KCD+CGK ++    L RH+ +H +EK                  +HL  H  ++  +CNVCG VF       +H +     KP Q + CG      +CL      L+ +   K     PYKC+VC K F DS     H R H
Sbjct:  468 KPYKCNECGKVFSQTSHLVGHRRIHTGEKPYKCDKCGKAFKQGSLLTRHKIIHTREKRYQCGECGKVFSENSCLVRHLRIHTGEQPYKCNVCGKVFNYSGNLSIHKRIHTGEKPFQCNECGTVFRNYSCLA---RHLRIHTGQK-----PYKCNVCGKVFNDSGNLSNHKRIH 632
The following BLAST results are available for this feature:
BLAST of TCONS_00028291 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN8362.580e-1834.68Zinc finger protein 836 OS=Homo sapiens GN=ZNF836 ... [more]
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