TCONS_00028298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028298
Unique NameTCONS_00028298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1199

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028298 ID=TCONS_00028298|Name=TCONS_00028298|organism=Clytia hemisphaerica|type=transcript|length=1199bp
AGAGTCAACACGAAGATGACTTTGAGTTTCATCACGTTATTAGTTTTATG
TTTACCAGAACTGATTTTCGCTCATTCTTGGATGACATGCCCACCCTCTT
TCAATCCAAGACTTGGACGAGGAGGGATCATTGGAGGCGCACAATGTGAA
GGGGAATGGGGCACAATCCCTGTCACCGAAGTTGAAGCGGGCGATCGATT
GAAAGTGGGATGGGTTTCGAACAACCATGGTGGCGGTTTTGCACGCATTG
CTTTAGTACCTTGGAATGAACGAAAAAATGCTCAAAGTTATAAAAACAAT
GTCATGAAGTTCGCTTGTTATGGACATGATGAGAGACCTGGCAAATACAG
AAATGGGGATTGCTTACATCCGTGTAATGCACGCAAAGGTTGCGAATATC
AGTNAAGACCTGGTAGATATGGATCTGGTGATTGTAAACATCCTTGCAAT
GGAAGACCTGGATGCGAATACCAATCTGACCCATCTGATTTTGAGCGTTA
CGATACAACCATCGGAATTCCAACAAACTTGAAAGATGGTTTCTACTCTC
TCCAAGCCTCTATGATAGTAGGCAATGGAGGTGTTTACAATAGTTGTGCT
AAACTAAAGGTCACAGGTGGAAGCCCGTCATTCACGTGCAGCTCCAGCAA
GACACCAGTTTCTTACAATTGTCGCACTGCGTTGAGCAAAGATATCTCGC
CGATAAAATCAGGGACTAAACGTGGTAACTTTTGTTATGGTCTTGACGGT
AAAGTTGGTACAGTGGATGATTATATGACAGATGTACCAATCAACGTTGA
TTGCGATCCACGTGCTTCTTGCAGCCAATCAACAGCAAGGAGTAGATGTC
AAAGTGAATTTCCATCAATGCTGAAGATTATTACATCATCGAGTAACCCA
AGGCAACCGAATTGTCCGGTATACAAAGTACTACCAAACCTTTAAATCTG
AGTGGATGAGAAATATTCGATCGGAAAAAGATCGGACGAATAGCCAGCCA
AAGCAAGAAGATTGAAAACTAAAGTTGAAATATagtttcattttcttcaa
acGATTTGGTGTCACTTGTACGTAATTGTATgtgaatattttatttttat
catataAGTTCCAAGTCAAATCTTAGTACACAGAATTCGTTTAAAAGTGC
ATGCAAATCAATATTGTACGCAATTGTTATCATTATGAACagttatttc
Run BLAST on NCBI

transcript from alignment at sc0000673:154696..158998+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028298 ID=TCONS_00028298|Name=TCONS_00028298|organism=Clytia hemisphaerica|type=transcript|length=4303bp|location=Sequence derived from alignment at sc0000673:154696..158998+ (Clytia hemisphaerica)
AGAGTCAACACGAAGATGACTTTGAGTTTCATCACGTTATTAGTTTTATG
TTTACCAGAACTGATTTTCGCTCATTCTTGGATGACATGCCCACCGTAAG
TAGATGTGAAATTTGAACGTTGGAGTaaacaaaatatgaaaaggCCGTAT
TCTCAAAAGTGTGCATTTCAAGATATCAGTCGTACAGACCCTAAGCCTTT
TTGCTGACCCTAAATAAGTTATATGATCAAACTCTTTGAAATAATAAACA
TAGATCGATATTCTACGTGAATAGCTCAGTAATCTAGAACAGTTTTATAT
TGTTTTAACAGGGTCTACAGCCAGCCGGATCAGCTATCTACGAGCTCGAC
GAAACTTTGTAGgaagcggggattcgaaccctTGGTTCAGGCGCTGAAAC
CTTGACCATTTGGCCATTACTTCCTATTATTACATCataagtaacttttt
tatttaaaccCATTTCAGCTCTTTCAATCCAAGACTTGGACGAGGAGGGA
TCATTGGAGGCGCACAATGTGAAGGGGAATGGGGCACAAGTAAGTAAAAT
CTGTTAAACTCCTGATCTTTTTGAATTCAATAGCCGAGTAGAAATCGCTG
CCATCAAGgcaaaaggtccaatctcaaaattagtgtcTGAGAAAACTGAG
AATTTCTCTGTTTGGCTAACCTTAAATCTTGAGCTTGGCCCTTTTTGCAT
AGTGAAGGGGATCCCATCTACATGAAAAagggtcaatctcaaaatttaaa
attagcaaaacAGAAGAAATTCTTAGTTTCCTCAGACACTAATTTTAAGA
TTGGTGACAGCGAAATGTTCTTGATTTCAGCTGAAGAAAAGTTGATTATA
AATTAGTTTCAGACCTTAGATTACCCTGGCTtacctgtattttgattttt
cgatgTTGGGATCAAAACTCAATGCAATTAATTTCTTGATTTCATTCTAG
TCCCTGTCACCGAAGTTGAAGCGGGCGATCGATTGAAAGTGGGATGGGTT
TCGAACAACCATGGTGGCGGTTTTGCACGCATTGCTTTAGTACCTTGGAA
TGAACGAAAAAATGCTCAAAGTTATAAAAACAATGTCATGAAGTTCGCTT
GTTATGGACATGATGAGAGACCTGGCAAATACAGAAATGGGGATTGCTTA
CATCCGTGTAATGCACGCAAAGGTTGCGAATATCAGTNAAGACCTGGTAG
ATATGGATCTGGTGATTGTAAACATCCTTGCAATGGAAGACCTGGATGCG
AATACCAATCTGGTAAGGAACTTAAAAACTGAACTTTGCAGGTTTACCCT
TTGGTCACACTTTAGTCGGTATAAAAACCCTTTGACTGAGAAATCATCAT
TTTACACCCCAAAATTGGGAAAACCCAGACCTTAGAGATCGTTTATTTTC
ACAAAGAAATTCGGAAAACCCATGCCTGGGAAATTATCATTTTACAACCC
GAAATTTGGAAAACCCAAGCCAAGGAGATTAGATTTTCCAGGCCTGTAGT
TGTTTCATTTTTACAGGGCAAATCCCAACCCCAAAAATGGCAATTTCTAA
TCCCGAAAATTGTCATTTCCCAGGGCAGGGGATTTAAGATTTGTCCTGTG
ATTGTTGTAACCTTGTGTTCCAGTTTTTGATCAGGTTACGAAATGCTCCC
CTATTAGGATTGGTTTaaaatttaatcacatgatcaaaaagtgaacaAAA
CAACCCAATTTATCAATGCAAGCTAAGAAACAATAAACAGGAAAAAGGAA
TACAGAACGAACTTTTTACACGGTAAAAGTAAATACGTTTCAACGAACGT
GAATTTGAATCGTCAAACTTGCGGAATTACTTCTATTTTAATGTTCTGCG
ATTCAGAAACTTGAACCTCTATGACTCGAAAGAATACTGGTTCCGCACAT
TTTTGTTGTCCAAGTCAGGAGACCTGATAGTATTTCAACCCACAGAATCt
atcactttcaaccaataatATTGCTCATGAAATATTATTAACTTTTAGAC
CCATCTGATTTTGAGCGTTACGATACAACCATCGGAATTCCAACAAACTT
GAAAGATGGTTTCTACTCTCTCCAAGCCTCTATGATAGTAGGCAATGGAG
GTGTTTACAATAGTTGTGCTAAACTAAAGGTCACAGGTGGAAGCCCGTCA
TTCACGTGCAGCTCCAGCAAGACACCAGTTTCTTACAATTGTCGCACTGC
GTTGAGCAAAGATATCTCGCCGATAAAATCAGGTAAAGCAACGATTTCAG
GTCATGTTCTCTTTGGCTCTAACGGAGAAGAATTTTTAGGAATCTTCCTT
TTATTCAAACCGCCCCCTTATATTTGGACCGCCCCGTTATTATTCGGACC
ACCTCTTttactattcgggaccttagagtaagaAACCTCCGCCAGCGCAT
TAcgtgtttaaaaaggtttaataaagaataaaaacgtGTTATTAATATCA
AGACTTTGAATTggaaatcaccttttcaaaaattacgtcatggacaacgc
ttacctcgtacttgttttcaaaatattgctatagTTTCAGAATCAGGTAG
TGGTCGCACTCAAATAATTCATGAGAAggtaaaaaatacatttttagtCC
TTCAAAATTAGGTGAATGAATCACCTCACTTTTTTGCCGAGGAAggctat
tttgaaaattctcttaAAACTTATTTTTCCATAAATTCTCTTCAAATTGA
CTCTAAGTGGGTCCTAAAATAGCGTTTTTAACCTTAAAATCCTAAATTTT
TCTCCGTTACCGAACCATGATGGCCAACGTCAATTTACTTCAATATTTGG
CCCCCTAAATTCAGCCCTCAAGCCGGGGACCCTGGACAAAAGTAAGATTG
ATAgggaatgttttcatttttagcaaCCCTGAGCCACAGACCAGACACAG
TGGGACCCCCACTCCATTGgaaaattatgtaaaatttCGTCTCcgccggt
gggaaaataccgtACAATTCCAGCACGActggaaatttattttcatcCCT
ATTTAAAACTCAATGGACAAAAGTTGCACTCTAAAATCACTTGCTTTTCT
CAaccaagaacaatagaatttctaatcTCATTCGGAtctcgatagaaatt
ttcatctctGCTATGGAAAGAAGTTCCACTGGAGACAGAGGTGTTTTTGA
CAAGAAATGAAATTTGGAAATTATTCCCAAATCTTTCCCCAAACTTTTCT
TCCAGGGACTAAACGTGGTAACTTTTGTTATGGTCTTGACGGTAAAGTTG
GTACAGTGGATGATTATATGACAGATGTACCAATCAACGTTGATTGCGAT
CCACGTGCTTCTTGCAGCCAATCAACAGCAAGGAGTAGATGTCAAAGTGA
ATTTCCATCAATGCTGAAGATTATTGTAagttttttgtataagaacaaat
tCTATAAGAACACCAGAGCGTTTCAAACATAGTCGACTGTAGTCCCTGTT
CTCAAGGGTTTACCTCCAAGATCTTGCTTTGCAATTCCAGTATTACAAAG
AATGATATCTGGGGGAAGTGGTTTTTTACCCCCTTGGTCTTAGTTTTGAG
AACTCTTCCCGGGAACATCgttacgttttttttatttctaatttgaaaaa
ctacattacacttacgaacatatactacttacaaaacgaacacagaaaaa
ataaatagctccTCCCCCTGTaaggcactaagtgatatcgccaGGGGTAC
TAAGCtataaaatataagaaaaacttAAAGGAAAAACCGTCActaaaagg
aataaaaaaagaCTTAGTTAGAGGCTACCATAGAAATAGAAGGGGTATCA
TATCCTCGTTCTGCACTAAAGCCAGGCGTCTTCAAAATTGAATTCTATGC
TTCTTCAAAAACAGCAGAGATTCTTGGACATCACCATAGATTTGACCAAA
TGAAGGCTGAGATCTCCAAAGAAAGGCAAGGCAATACTTTGATTAGTAAC
AATTTCACTTATAATCTTCCTTAATTTACATTGTAGACATCATCGAGTAA
CCCAAGGCAACCGAATTGTCCGGTATACAAAGTACTACCAAACCTTTAAA
TCTGAGTGGATGAGAAATATTCGATCGGAAAAAGATCGGACGAATAGCCA
GCCAAAGCAAGAAGATTGAAAACTAAAGTTGAAATATagtttcattttct
tcaaacGATTTGGTGTCACTTGTACGTAATTGTATgtgaatattttattt
ttatcatataAGTTCCAAGTCAAATCTTAGTACACAGAATTCGTTTAAAA
GTGCATGCAAATCAATATTGTACGCAATTGTTATCATTATGAACagttat
ttc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016033XLOC_016033Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028298-exon-sc0000673-1491911889:154696..154790TCONS_00028298-exon-sc0000673-1491911889:154696..154790Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1510915933:154696..154790TCONS_00028298-exon-sc0000673-1510915933:154696..154790Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1575043694:154696..154790TCONS_00028298-exon-sc0000673-1575043694:154696..154790Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1491911889:155164..155234TCONS_00028298-exon-sc0000673-1491911889:155164..155234Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1510915933:155164..155234TCONS_00028298-exon-sc0000673-1510915933:155164..155234Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1575043694:155164..155234TCONS_00028298-exon-sc0000673-1575043694:155164..155234Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1491911889:155646..155957TCONS_00028298-exon-sc0000673-1491911889:155646..155957Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1510915933:155646..155957TCONS_00028298-exon-sc0000673-1510915933:155646..155957Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1575043694:155646..155957TCONS_00028298-exon-sc0000673-1575043694:155646..155957Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1491911889:156694..156927TCONS_00028298-exon-sc0000673-1491911889:156694..156927Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1510915933:156694..156927TCONS_00028298-exon-sc0000673-1510915933:156694..156927Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1575043694:156694..156927TCONS_00028298-exon-sc0000673-1575043694:156694..156927Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1491911889:157901..158070TCONS_00028298-exon-sc0000673-1491911889:157901..158070Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1510915933:157901..158070TCONS_00028298-exon-sc0000673-1510915933:157901..158070Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1575043694:157901..158070TCONS_00028298-exon-sc0000673-1575043694:157901..158070Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1491911889:158682..158998TCONS_00028298-exon-sc0000673-1491911889:158682..158998Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1510915933:158682..158998TCONS_00028298-exon-sc0000673-1510915933:158682..158998Clytia hemisphaericaexon
TCONS_00028298-exon-sc0000673-1575043694:158682..158998TCONS_00028298-exon-sc0000673-1575043694:158682..158998Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000673supercontigsc0000673:154696..158998 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.91204e-09	0	0	7.15956e-09	2.11199e-09	0	0	0.0513886	0	0	0	2.15808	2.54145	0.802408	6.76903	0.527555	0.729906	0	0.706504	4.46066e-10	3.28259e-09	0	0	0	0	0.56799	0.875484	0.0473585	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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