TCONS_00028304 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028304
Unique NameTCONS_00028304
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1342

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028304 ID=TCONS_00028304|Name=TCONS_00028304|organism=Clytia hemisphaerica|type=transcript|length=1342bp
GCTcgtgaaaattgtttttatctaaaaatacaatgaaaaccaaaccaaaa
caaTCAGTTGAAACGCCATTAAAAACAaccaaatttcaatcaaatcagCA
ATTAAAACATTTCTTTTACAACACTACGCATGCgcctaaaaataaaacaa
taaatggTCATTCAAAAAGATATCAAAACACCGCTTGCTGTtataaaaac
acacaaattttgcAAGAAAGAATCATTCTCGAGCTGAACTATCAAGCAGG
GGACAGCGCTTCTACAAAAAGGTTTACTTTCAAAATAACTACAAGAAAAT
CTAACTAAAGATGGCAGCTAATGTTACATTCGATTACTCTGGAAAAGTGG
TGCTGGTCACAGGTGCTGGATCAGGCATCGGTCAAGGCACTGCTTACATG
TTCGCAAAATCTGGTGCCAAAATGGTCGTTACAGATCGTAACGAAGGCAA
ATTGAAAGAAACTGCAAAAAAATGTGAAGAATTAAGCAAGCAAACGGCCC
TGGCAATTGTTGGAGATATCACAGTTCAAAGTGACATTGAGAACATTATC
AATACAACCATGGATACTTTCAAACGTCTCGATGTCTTGGTAAACAATGC
TGGAGGTTTAGTCATGGGGACATGTCTTCAAACATCAACAGAAGATTTTG
ATCAAATGATGAACATCAATGTCAGATCTGTTTTTCTCATTACCAAGATG
GCTATTCCACATTTGAAGAAAACTCAAGGCAACATTGTCAACGTTTCGAC
CCTTGGTAGCTCGAGACCACAAATTGGAGTAAATGCATATTGTACCAGCA
AAGCAGCTTTGGATCAATTTACGAGAGCTACTGCAATTGAGTTAGGAGCT
GACCAAGTTCGTGTCAATTGTGTCAACCCAAGCATCATTGCTACTGAAAA
TACCTCAAGTAGCAACCATCCCACAATCTCAAGTGCAATGGAAAGAAGCA
AAGACGTGCACGCCCTGGGTCGTGCTGGTACAGTTGACGAGGTAGCCTCA
GTTATCTGTTTCCTAGCGTCAGGAGCTGCTTCATATATGACTGGAGCATG
CATCCCAATCGATGGAGGACGATCAAACATGATTCCAGTCTAGATCTTCA
ACAATACGATATTTACAGTCTGTAACatggattaaaaaaaaattctacca
aCAAAATCGATGTACTTTGATTTCTTTGAACAGTGTGATTTTTAATGTga
gcttttttaattttttgtggtTTTGGGTGAAGCACTCTTTTGtatattgt
caattttttcacttttctatAAAACCAAATATctttggaaataatttttt
tactatGGTTGAATGAGAAATAAAAACGAAATACAAAAAATT
Run BLAST on NCBI

protein sequence of TCONS_00028304-protein

>TCONS_00028304-protein ID=TCONS_00028304-protein|Name=TCONS_00028304-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
MAANVTFDYSGKVVLVTGAGSGIGQGTAYMFAKSGAKMVVTDRNEGKLKE
TAKKCEELSKQTALAIVGDITVQSDIENIINTTMDTFKRLDVLVNNAGGL
VMGTCLQTSTEDFDQMMNINVRSVFLITKMAIPHLKKTQGNIVNVSTLGS
SRPQIGVNAYCTSKAALDQFTRATAIELGADQVRVNCVNPSIIATENTSS
SNHPTISSAMERSKDVHALGRAGTVDEVASVICFLASGAASYMTGACIPI
DGGRSNMIPV
Run BLAST on NCBI

transcript from alignment at sc0000673:11344..17755-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028304 ID=TCONS_00028304|Name=TCONS_00028304|organism=Clytia hemisphaerica|type=transcript|length=6412bp|location=Sequence derived from alignment at sc0000673:11344..17755- (Clytia hemisphaerica)
GCTCGTGAAAATTGTTTTTATCTAAAAATACAATGAAAACCAAACCAAAA
CAATCAGTTGAAACGCCATTAAAAACAACCAAATTTCAATCAAATCAGCA
ATTAAAACATTTCTTTTACAACACTACGCATGCGCCTAAAAATAAAACAA
TAAATGGTCATTCAAAAAGATATCAAAACACCGCTTGCTGTTATAAAAAC
ACACAAATTTTGCAAGAAAGAATCATTCTCGAGCTGAACTATCAAGCAGG
GGACAGCGCTTCTACAAAAAGGTTTACTTTCAAAATAACTACAAGAAAAT
CTAACTAAAGATGGCAGCTAATGTTACATTCGATTACTCTGGAAAAGTGG
TGCTGGTCACAGGTTTGTTGTAAAGATAATTTCTTCTATAAAATCTTCTA
CCCCTGAATTATATTCCACTCTATTCTATTGATATTCATAAAATGTTTCG
ACCGCTTTTCTGGGGTCAATGGCTAAAAACATTAGAGTGTCGCATCCTTA
GGTACAGAAAACATCTTGTGTTCAACTAGTAAGTGATTCACTAAGCTGAT
CTTATTTAGAGCCTGATTGCACGTTTTTTATAAGAACATTCAAAAATTTT
GAAGCCTTGGGATGTTGTTAACTTTTTGAAGAAAATTTTTTAACATGCTC
TTATTTTCGCCATTTTTTGAGTACTTTTGTCCATTTTCCTATGAATTTCG
GTTTTCTAGAGTCCGAAAAGCCTAAAGATGTTCTTCACTTGTTCTTAACA
TCTTGAGAATCGAAGTCTTTATATATGTTCTTATATAGTTTGCTCTTATA
AAAAACGTCTATNTTTGTTCTTAACATCTTGGGAATCGAAGTCTTTATAT
ATGGTCTTATATAGTTTGCTCTTATAAAAAACGTCTATTACTATTTTCAT
TGGAATCCTAGTCCGAAAAGTAGAATCGTAGAATTTGCAACATTGCGTGT
TAGTAGATCTTCAATTCCCTTGTACACTTCAGAATTCCTTCTCTCCCAAA
TAACTTCGAACCATTTTCTGGTATATCCGATACCTTTTATAACAGATTAT
AAGCTTATTGATATAAGGATTTATCAATCTTTTTTGAAAATATCTTTATC
AGGTGCTGGATCAGGCATCGGTCAAGGCACTGCTTACATGTTCGCAAAAT
CTGGTGCCAAAATGGTCGTTACAGATCGTAACGAAGGCAAATTGAAAGAA
ACTGCAAAAAAATGTGAAGAATTAAGCAAGCAAACGGTAATTCAATTAAA
AAATGAATTAACATTTTCTTCCGTTCGAAAATTAGAATTATGATATATTT
TCCATGTTTCAGCAGCAAGGCAATTCCCTAAAAATGACTCTAGTACGAAG
GAATACCTATAAGGACTTGAATTATCCGTCAAGGTGAATAAGGGGTGACC
AATGAGTAAAGGATGGCTTTATTTAGATCCCACACGAGACTAGCAAGCGT
CTGTCTTTCCTTGGACACAGGAACGCGGGAATAGTGCTTATAATAAAGAG
AGTTCTTATAAAAAATAGAAATTGCCGCGGGAGAGTGGATTGGAAAGATT
GTATTCAGTGAACATATATAGAAATAGATCCATTGCAAGTTCAATCTACA
GCAAAATACAACGACGTGGTTTACTAGTCTAATCCCACACTGACATGGAA
ATCCCCCCTTCTCTTTACCGTGCAAAGCGAACACCGTGAAAAAATCACGT
TAATATTTTTGTTTCACGTGAATTTAAACCATCTTGTCATTCAGAAATCC
TTCCATTCAAAGTTTTCTTTCAATGTTTTTCTTGCCATCTCGGTGCAAAG
CTGACCTTTCAAACTTTGTAATAAACAATCGAAATTATCGGGAAATATCC
TACTGTGGCTGAGAAATTCATGACCGTGATTTTTATTGAGGTGTTAACGC
GCGAAACATTAAAGTCCTACCGTCGTTTGGTATAAGATTCGCATTTCCAC
ACTAAGATTCTTGTCAGTTTTCCGGAATCTTTCCGCTACTTTCCCCGGGA
TGATATTGGAAAGGGTTTGTCTCTAAAGGTACAGAAAATCTTGCGTTTTC
TCACGAAACTTTCCGAAGCTTATTTCTCAACTATCCGGAGCTCTGGTCTT
TTTCCGTTAGAAAAGTGGCAAAGGAATCTTAGTACGGAAATAAGAATCTT
ATATAGAACGACGGATACACGGATACAGATTTTTACTAAGAAACAAAGTT
CAACCTGAATCAGCGCTATCCATTTTCAAAATATAAAAACAAACTTTATG
AGAACGTCTCAACTTGTCTTAAATAGACGTTCCTTTGACGTCTCATTTTT
CGCGCTTCCCGGAAAAATCTTAAAAGATCTCATCCTCAAGCATATATCCC
GAAAGGGCCATAGGCGAAACTCTTAGATATGAACTGATAATCTACTCATT
TACCATCTGAGAAGCGTGACCGTTATGGCTTAAAAACGCTGAATCGGAGG
TTAGATATATTGCCACATTAAAAATATACCTTGTGAAAACAAACTTTCAA
TCCGCCATTCTAAATTGTGGCGAGAATCTTAAGGCTTCGTTTCTTGCTTC
GGAAAGGTTAAAGATCTCACACTCTAGCTCTTCGAAGAAGCATAAAAGGC
AAATTATCCATCCGAAATCCAAAAATGTATTTTATATTTCTTCATTAACA
GGCCCTGGCAATTGTTGGAGATATCACAGTTCAAAGTGACATTGAGAACA
TTATCAATACAACCATGGATACTTTCAAACGTCTCGATGTCTTGGTAAGT
TATTATTATCAACATCAAGTTAGATATTGACGAAGTTAAATCCTTTGGTA
TTAGATACTATGCCAGAATGTCATGAAAATTTTAACATACCAGAACTTTA
ACTCAATAAGGTACGTTCATATGAGTAAAATTAGTACTGCGACGCATTGA
GTAATTTAACTTCTTTTATTACGCAGGTAAACAATGCTGGAGGTTTAGTC
ATGGGGACATGTCTTCAAACATCAACAGAAGATTTTGATCAAATGATGAA
CATCAATGTCAGGTAAACAACTTCCAGCTGGCACACAACGTTGTTTCAAC
GTTTATCTAACGTTCACAACGTCCAGATAAAAACGTTAGATTAACGTTTA
AACAACGTTGTGTGCCAGCTGGGCTTGTGTTCTTTCATTTCGTTCCTTCT
ACACTGGTATGTAAATTAACGAGTTCATGTATGTCTGTTTTTCTGCTACG
GAGATGGATAGTTCTTTTTTCATTTTTCATTTTTCTGTCGTGACTGACTA
GCGATGACGGTAAGTCACCACTTTTACTGTCCTCGATTTTGCGGGTCAAA
CTGTGAGCTGTTGCAATTCGTTTCGGTCACTTTACCCTCCTCAGGGTACA
TAAATTTGCAATTTCACTGCAGCAAGGGTGTCGTAAGAGACGAATGAACA
CAGCTCCAAATAAGGACGATCAACGCCCCATTTACAATTTATATTCATCA
AGCTAGTGTTTGATTTTTTGGCACAAGATATTGTCTCCCTTTGTCAGCTT
AACAGGTCGCTTCTTGCAACAAAATGAAGAGGTACTTAAAGTGTACCTAC
TTCAAACACTCTTGACTGTCTGTATTTGTTTATGTTACCTAATTCAAATG
TCACGTTTTGATGGTCTAATGTTTACATAATGGATCCATTTTTAGATGCT
ACACGTGACGAACTATTTCTAATGCAAATCATGTACTTAAAGAGAAATTA
CTACCTTATTACACGAATATTACTACTCATTTTATTAACACGAATTGAAA
AATTTCGTGTAAAACCCCCTTAATTAAAACCAGCCGGTTGTTTCCTTGAA
AAAGCAGAAAAATTCGTGTTAATTTCAGATTGTGCAAATTTCAAGGCCGT
TAAATACTTGCCTAGTAATATTCGTGTAATGAGGTATATACACAAGCTCT
CTGATTGGTCGGACCCTAATTATGGAACCAATGAAGAGGTTTTCAGTGAC
GCTTAAAGACCCATAAAACCCTTGGTAGAACCGAACCCTCAAACTCGTGT
GCTTTCGAAAGCTCTGTTATAATCCTTATGTCAATTCTTGTTTCCAGATC
TGTTTTTCTCATTACCAAGATGGCTATTCCACATTTGAAGAAAACTCAAG
GTAAAAGTCAGCTTGTTTTTTAATCTTAAAACTGAATTTCAGCCAACTCT
ACTACAAGCAAACCTTCACCAATCCAATATCTTTATCTCTAGCTAAAATA
GTTTTGCCTACAAATAGACTTAAACTTGAGGGTACCATCAGATAATATCA
GAGTAAATTGTAAAAGTGAAATTATTTTTCGGGGTATAAAAACCTTTGTG
GAGAAAAGATCATTGTGGTGAACAAAAGTCAAAATTTGAGAAACTAATTT
GGGAACAAAAAATGTCGTGTTTATTAAAACCGTGTTTTGTTCAATCTTTT
AGGCAACATTGTCAACGTTTCGACCCTTGGTAGCTCGAGACCAGTAAGTT
GTTCTTTTTCAATCTCTTCAGAACTTTCAGTTGCCTCGTTCTTTTTCATG
AGACCATATTCGCACGTGACGGTTGAAGCCATTCTATTGGTTAGAAGTGA
CGTAACACTTGAATGTAACCAATTGAATCGCTTCATTTTGTTTCGGGGCT
CACGTGAGAATTTGGCCTGAATTTTGGGTATCTAACATACTGTATTTAAA
CTCTGATAACTGGTATTGGTGCCAACTCTTTCCTCATTTCATAGCCTACA
CACACACCTACTCATACTATACACATCCCTTCTTTAGAAGCAACCAGGTT
GTTAAGCATCGAGCCCTAAAATAAGCTAATTCTTCTCCCCTATAAAAGGT
TAAACGGTAGCCCTTGACCCAATAAGCATTGATAGAGTATAATATGAGGG
GTGGCTAGAGCAAGTTTTTTTTTAAATTGAGCTAAAATGTTAAGCAACTT
CAACCCTAAGCCGAAAATTTTCTTTTGTTGCAGCAAATTGGAGTAAATGC
ATATTGTACCAGCAAAGCAGCTTTGGATCAATTTACGAGAGCTACTGCAA
TTGAGTTAGGAGCTGACCAAGTTCGTGTCAATTGTGTCAACCCAAGCATC
ATTGCTACTGAAAATACCTCAAGTAGCAACCATCCCACAATCTCAGTATG
TAGTAGTTTTTTAATTTCTAAAGTATTTCTATAACTTGAAAATCAAATGT
ACAGAAGGCCCTTTCATCTAGTGCCTGTTTAATCCATTTAAGATACAGGA
AAAAATTTAGCTATAATATCCGCCCTTTGAATTCCACTGGCGGATATAAG
ACAATAGAGCAAGTACGCCAAAAACATGCTAAGGAGTGCAACGGTCGTCA
ATTGACAATTAAATTACAATTACAAATCTCTTAACCCAGTGCACCTTGAA
AAGTGTACATTTTACAGTGTGTCTCGAAAAAGATACTGTATCAGACCGCT
TATATACTAAGTAGAAATAGTACTCTTTTCAATTATTTATACGAGATGAT
CTTTAATGTGTTGTTTGCCAAAAAACATGCCTTAATTTTAGTTGGCCTTA
ATTATTAGTTGATCCTAATTTTACTCACCTCGTCAAAATTAAGTCACTAA
GGGCCGACTAATAATTAAATTTTGGCCATTTCTAAATTTTTAGTCGGCCC
AAATTTTAGTCACCAAACCAAAATTTAGTCACTTAGGGCCGACTAAGTTT
TGGTCGATAAGGTAGATTACAGAACAGATCAACGAATATCATGTATTTTC
CACCACAATGTACCAACTGTACTAGTACTGTACAAACAAAATTGATGGTA
ATTTCCCTGCTTTATTTAGAAATGATAGGTAAACTTTTTCATATACGATA
AATATTTTCTACTCACAGTTCTTTTCTTGCTGTATCCCAGCTGGCACACA
GCGTTGTTTCAACGTTCATCTAACGTTATATGTACGTTGTGAACGTTAGA
CAAACGTTAAAACAACGTTGTGTGCCTGCTGGGATGTGTCATATGTTATG
GTAAACTATAATAAACCATTGCTTGAAATCATTGCGATTAATTTCTCATA
GAGTGCAATGGAAAGAAGCAAAGACGTGCACGCCCTGGGTCGTGCTGGTA
CAGTTGACGAGGTAGCCTCAGTTATCTGTTTCCTAGCGTCAGGAGCTGCT
TCATATATGACTGGAGCATGCATCCCAATCGATGGAGGACGATCAAACAT
GATTCCAGTCTAGATCTTCAACAATACGATATTTACAGTCTGTAACATGG
ATTAAAAAAAAATTCTACCAACAAAATCGATGTACTTTGATTTCTTTGAA
CAGTGTGATTTTTAATGTGAGCTTTTTTAATTTTTTGTGGTTTTGGGTGA
AGCACTCTTTTGTATATTGTCAATTTTTTCACTTTTCTATAAAACCAAAT
ATCTTTGGAAATAATTTTTTTACTATGGTTGAATGAGAAATAAAAACGAA
ATACAAAAAATT

Coding sequence (CDS) from alignment at sc0000673:11344..17755-

>TCONS_00028304 ID=TCONS_00028304|Name=TCONS_00028304|organism=Clytia hemisphaerica|type=CDS|length=6264bp|location=Sequence derived from alignment at sc0000673:11344..17755- (Clytia hemisphaerica)
AGTGCAATGGAAAGAAGCAAAGACGTGCACGCCCTGGGTCGTGCTGGTAC
AGTTGACGAGGTAGCCTCAGTTATCTGTTTCCTAGCGTCAGGAGCTGCTT
CATATATGACTGGAGCATGCATCCCAATCGATGGAGGACGATCAAACATG
ATTCCAGTCTAGCAAATTGGAGTAAATGCATATTGTACCAGCAAAGCAGC
TTTGGATCAATTTACGAGAGCTACTGCAATTGAGTTAGGAGCTGACCAAG
TTCGTGTCAATTGTGTCAACCCAAGCATCATTGCTACTGAAAATACCTCA
AGTAGCAACCATCCCACAATCTCAGCAACATTGTCAACGTTTCGACCCTT
GGTAGCTCGAGACCAATCTGTTTTTCTCATTACCAAGATGGCTATTCCAC
ATTTGAAGAAAACTCAAGGTAAACAATGCTGGAGGTTTAGTCATGGGGAC
ATGTCTTCAAACATCAACAGAAGATTTTGATCAAATGATGAACATCAATG
TCAGGCCCTGGCAATTGTTGGAGATATCACAGTTCAAAGTGACATTGAGA
ACATTATCAATACAACCATGGATACTTTCAAACGTCTCGATGTCTTGGTG
CTGGATCAGGCATCGGTCAAGGCACTGCTTACATGTTCGCAAAATCTGGT
GCCAAAATGGTCGTTACAGATCGTAACGAAGGCAAATTGAAAGAAACTGC
AAAAAAATGTGAAGAATTAAGCAAGCAAACGATGGCAGCTAATGTTACAT
TCGATTACTCTGGAAAAGTGGTGCTGGTCACAGAGTGCAATGGAAAGAAG
CAAAGACGTGCACGCCCTGGGTCGTGCTGGTACAGTTGACGAGGTAGCCT
CAGTTATCTGTTTCCTAGCGTCAGGAGCTGCTTCATATATGACTGGAGCA
TGCATCCCAATCGATGGAGGACGATCAAACATGATTCCAGTCTAGCAAAT
TGGAGTAAATGCATATTGTACCAGCAAAGCAGCTTTGGATCAATTTACGA
GAGCTACTGCAATTGAGTTAGGAGCTGACCAAGTTCGTGTCAATTGTGTC
AACCCAAGCATCATTGCTACTGAAAATACCTCAAGTAGCAACCATCCCAC
AATCTCAGCAACATTGTCAACGTTTCGACCCTTGGTAGCTCGAGACCAAT
CTGTTTTTCTCATTACCAAGATGGCTATTCCACATTTGAAGAAAACTCAA
GGTAAACAATGCTGGAGGTTTAGTCATGGGGACATGTCTTCAAACATCAA
CAGAAGATTTTGATCAAATGATGAACATCAATGTCAGGCCCTGGCAATTG
TTGGAGATATCACAGTTCAAAGTGACATTGAGAACATTATCAATACAACC
ATGGATACTTTCAAACGTCTCGATGTCTTGGTGCTGGATCAGGCATCGGT
CAAGGCACTGCTTACATGTTCGCAAAATCTGGTGCCAAAATGGTCGTTAC
AGATCGTAACGAAGGCAAATTGAAAGAAACTGCAAAAAAATGTGAAGAAT
TAAGCAAGCAAACGATGGCAGCTAATGTTACATTCGATTACTCTGGAAAA
GTGGTGCTGGTCACAGAGTGCAATGGAAAGAAGCAAAGACGTGCACGCCC
TGGGTCGTGCTGGTACAGTTGACGAGGTAGCCTCAGTTATCTGTTTCCTA
GCGTCAGGAGCTGCTTCATATATGACTGGAGCATGCATCCCAATCGATGG
AGGACGATCAAACATGATTCCAGTCTAGCAAATTGGAGTAAATGCATATT
GTACCAGCAAAGCAGCTTTGGATCAATTTACGAGAGCTACTGCAATTGAG
TTAGGAGCTGACCAAGTTCGTGTCAATTGTGTCAACCCAAGCATCATTGC
TACTGAAAATACCTCAAGTAGCAACCATCCCACAATCTCAGCAACATTGT
CAACGTTTCGACCCTTGGTAGCTCGAGACCAATCTGTTTTTCTCATTACC
AAGATGGCTATTCCACATTTGAAGAAAACTCAAGGTAAACAATGCTGGAG
GTTTAGTCATGGGGACATGTCTTCAAACATCAACAGAAGATTTTGATCAA
ATGATGAACATCAATGTCAGGCCCTGGCAATTGTTGGAGATATCACAGTT
CAAAGTGACATTGAGAACATTATCAATACAACCATGGATACTTTCAAACG
TCTCGATGTCTTGGTGCTGGATCAGGCATCGGTCAAGGCACTGCTTACAT
GTTCGCAAAATCTGGTGCCAAAATGGTCGTTACAGATCGTAACGAAGGCA
AATTGAAAGAAACTGCAAAAAAATGTGAAGAATTAAGCAAGCAAACGATG
GCAGCTAATGTTACATTCGATTACTCTGGAAAAGTGGTGCTGGTCACAGA
GTGCAATGGAAAGAAGCAAAGACGTGCACGCCCTGGGTCGTGCTGGTACA
GTTGACGAGGTAGCCTCAGTTATCTGTTTCCTAGCGTCAGGAGCTGCTTC
ATATATGACTGGAGCATGCATCCCAATCGATGGAGGACGATCAAACATGA
TTCCAGTCTAGCAAATTGGAGTAAATGCATATTGTACCAGCAAAGCAGCT
TTGGATCAATTTACGAGAGCTACTGCAATTGAGTTAGGAGCTGACCAAGT
TCGTGTCAATTGTGTCAACCCAAGCATCATTGCTACTGAAAATACCTCAA
GTAGCAACCATCCCACAATCTCAGCAACATTGTCAACGTTTCGACCCTTG
GTAGCTCGAGACCAATCTGTTTTTCTCATTACCAAGATGGCTATTCCACA
TTTGAAGAAAACTCAAGGTAAACAATGCTGGAGGTTTAGTCATGGGGACA
TGTCTTCAAACATCAACAGAAGATTTTGATCAAATGATGAACATCAATGT
CAGGCCCTGGCAATTGTTGGAGATATCACAGTTCAAAGTGACATTGAGAA
CATTATCAATACAACCATGGATACTTTCAAACGTCTCGATGTCTTGGTGC
TGGATCAGGCATCGGTCAAGGCACTGCTTACATGTTCGCAAAATCTGGTG
CCAAAATGGTCGTTACAGATCGTAACGAAGGCAAATTGAAAGAAACTGCA
AAAAAATGTGAAGAATTAAGCAAGCAAACGATGGCAGCTAATGTTACATT
CGATTACTCTGGAAAAGTGGTGCTGGTCACAGAGTGCAATGGAAAGAAGC
AAAGACGTGCACGCCCTGGGTCGTGCTGGTACAGTTGACGAGGTAGCCTC
AGTTATCTGTTTCCTAGCGTCAGGAGCTGCTTCATATATGACTGGAGCAT
GCATCCCAATCGATGGAGGACGATCAAACATGATTCCAGTCTAGCAAATT
GGAGTAAATGCATATTGTACCAGCAAAGCAGCTTTGGATCAATTTACGAG
AGCTACTGCAATTGAGTTAGGAGCTGACCAAGTTCGTGTCAATTGTGTCA
ACCCAAGCATCATTGCTACTGAAAATACCTCAAGTAGCAACCATCCCACA
ATCTCAGCAACATTGTCAACGTTTCGACCCTTGGTAGCTCGAGACCAATC
TGTTTTTCTCATTACCAAGATGGCTATTCCACATTTGAAGAAAACTCAAG
GTAAACAATGCTGGAGGTTTAGTCATGGGGACATGTCTTCAAACATCAAC
AGAAGATTTTGATCAAATGATGAACATCAATGTCAGGCCCTGGCAATTGT
TGGAGATATCACAGTTCAAAGTGACATTGAGAACATTATCAATACAACCA
TGGATACTTTCAAACGTCTCGATGTCTTGGTGCTGGATCAGGCATCGGTC
AAGGCACTGCTTACATGTTCGCAAAATCTGGTGCCAAAATGGTCGTTACA
GATCGTAACGAAGGCAAATTGAAAGAAACTGCAAAAAAATGTGAAGAATT
AAGCAAGCAAACGATGGCAGCTAATGTTACATTCGATTACTCTGGAAAAG
TGGTGCTGGTCACAGAGTGCAATGGAAAGAAGCAAAGACGTGCACGCCCT
GGGTCGTGCTGGTACAGTTGACGAGGTAGCCTCAGTTATCTGTTTCCTAG
CGTCAGGAGCTGCTTCATATATGACTGGAGCATGCATCCCAATCGATGGA
GGACGATCAAACATGATTCCAGTCTAGCAAATTGGAGTAAATGCATATTG
TACCAGCAAAGCAGCTTTGGATCAATTTACGAGAGCTACTGCAATTGAGT
TAGGAGCTGACCAAGTTCGTGTCAATTGTGTCAACCCAAGCATCATTGCT
ACTGAAAATACCTCAAGTAGCAACCATCCCACAATCTCAGCAACATTGTC
AACGTTTCGACCCTTGGTAGCTCGAGACCAATCTGTTTTTCTCATTACCA
AGATGGCTATTCCACATTTGAAGAAAACTCAAGGTAAACAATGCTGGAGG
TTTAGTCATGGGGACATGTCTTCAAACATCAACAGAAGATTTTGATCAAA
TGATGAACATCAATGTCAGGCCCTGGCAATTGTTGGAGATATCACAGTTC
AAAGTGACATTGAGAACATTATCAATACAACCATGGATACTTTCAAACGT
CTCGATGTCTTGGTGCTGGATCAGGCATCGGTCAAGGCACTGCTTACATG
TTCGCAAAATCTGGTGCCAAAATGGTCGTTACAGATCGTAACGAAGGCAA
ATTGAAAGAAACTGCAAAAAAATGTGAAGAATTAAGCAAGCAAACGATGG
CAGCTAATGTTACATTCGATTACTCTGGAAAAGTGGTGCTGGTCACAGAG
TGCAATGGAAAGAAGCAAAGACGTGCACGCCCTGGGTCGTGCTGGTACAG
TTGACGAGGTAGCCTCAGTTATCTGTTTCCTAGCGTCAGGAGCTGCTTCA
TATATGACTGGAGCATGCATCCCAATCGATGGAGGACGATCAAACATGAT
TCCAGTCTAGCAAATTGGAGTAAATGCATATTGTACCAGCAAAGCAGCTT
TGGATCAATTTACGAGAGCTACTGCAATTGAGTTAGGAGCTGACCAAGTT
CGTGTCAATTGTGTCAACCCAAGCATCATTGCTACTGAAAATACCTCAAG
TAGCAACCATCCCACAATCTCAGCAACATTGTCAACGTTTCGACCCTTGG
TAGCTCGAGACCAATCTGTTTTTCTCATTACCAAGATGGCTATTCCACAT
TTGAAGAAAACTCAAGGTAAACAATGCTGGAGGTTTAGTCATGGGGACAT
GTCTTCAAACATCAACAGAAGATTTTGATCAAATGATGAACATCAATGTC
AGGCCCTGGCAATTGTTGGAGATATCACAGTTCAAAGTGACATTGAGAAC
ATTATCAATACAACCATGGATACTTTCAAACGTCTCGATGTCTTGGTGCT
GGATCAGGCATCGGTCAAGGCACTGCTTACATGTTCGCAAAATCTGGTGC
CAAAATGGTCGTTACAGATCGTAACGAAGGCAAATTGAAAGAAACTGCAA
AAAAATGTGAAGAATTAAGCAAGCAAACGATGGCAGCTAATGTTACATTC
GATTACTCTGGAAAAGTGGTGCTGGTCACAGAGTGCAATGGAAAGAAGCA
AAGACGTGCACGCCCTGGGTCGTGCTGGTACAGTTGACGAGGTAGCCTCA
GTTATCTGTTTCCTAGCGTCAGGAGCTGCTTCATATATGACTGGAGCATG
CATCCCAATCGATGGAGGACGATCAAACATGATTCCAGTCTAGCAAATTG
GAGTAAATGCATATTGTACCAGCAAAGCAGCTTTGGATCAATTTACGAGA
GCTACTGCAATTGAGTTAGGAGCTGACCAAGTTCGTGTCAATTGTGTCAA
CCCAAGCATCATTGCTACTGAAAATACCTCAAGTAGCAACCATCCCACAA
TCTCAGCAACATTGTCAACGTTTCGACCCTTGGTAGCTCGAGACCAATCT
GTTTTTCTCATTACCAAGATGGCTATTCCACATTTGAAGAAAACTCAAGG
TAAACAATGCTGGAGGTTTAGTCATGGGGACATGTCTTCAAACATCAACA
GAAGATTTTGATCAAATGATGAACATCAATGTCAGGCCCTGGCAATTGTT
GGAGATATCACAGTTCAAAGTGACATTGAGAACATTATCAATACAACCAT
GGATACTTTCAAACGTCTCGATGTCTTGGTGCTGGATCAGGCATCGGTCA
AGGCACTGCTTACATGTTCGCAAAATCTGGTGCCAAAATGGTCGTTACAG
ATCGTAACGAAGGCAAATTGAAAGAAACTGCAAAAAAATGTGAAGAATTA
AGCAAGCAAACGATGGCAGCTAATGTTACATTCGATTACTCTGGAAAAGT
GGTGCTGGTCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016036XLOC_016036Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028304-exon-sc0000673-1575043694:17394..17755TCONS_00028304-exon-sc0000673-1575043694:17394..17755Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1575043694:16520..16653TCONS_00028304-exon-sc0000673-1575043694:16520..16653Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1575043694:15012..15104TCONS_00028304-exon-sc0000673-1575043694:15012..15104Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1575043694:14744..14829TCONS_00028304-exon-sc0000673-1575043694:14744..14829Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1575043694:13656..13708TCONS_00028304-exon-sc0000673-1575043694:13656..13708Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1575043694:13313..13353TCONS_00028304-exon-sc0000673-1575043694:13313..13353Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1575043694:12661..12822TCONS_00028304-exon-sc0000673-1575043694:12661..12822Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1575043694:11344..11754TCONS_00028304-exon-sc0000673-1575043694:11344..11754Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1510915933:17394..17755TCONS_00028304-exon-sc0000673-1510915933:17394..17755Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1510915933:16520..16653TCONS_00028304-exon-sc0000673-1510915933:16520..16653Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1510915933:15012..15104TCONS_00028304-exon-sc0000673-1510915933:15012..15104Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1510915933:14744..14829TCONS_00028304-exon-sc0000673-1510915933:14744..14829Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1510915933:13656..13708TCONS_00028304-exon-sc0000673-1510915933:13656..13708Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1510915933:13313..13353TCONS_00028304-exon-sc0000673-1510915933:13313..13353Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1510915933:12661..12822TCONS_00028304-exon-sc0000673-1510915933:12661..12822Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1510915933:11344..11754TCONS_00028304-exon-sc0000673-1510915933:11344..11754Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1491911889:17394..17755TCONS_00028304-exon-sc0000673-1491911889:17394..17755Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1491911889:16520..16653TCONS_00028304-exon-sc0000673-1491911889:16520..16653Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1491911889:15012..15104TCONS_00028304-exon-sc0000673-1491911889:15012..15104Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1491911889:14744..14829TCONS_00028304-exon-sc0000673-1491911889:14744..14829Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1491911889:13656..13708TCONS_00028304-exon-sc0000673-1491911889:13656..13708Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1491911889:13313..13353TCONS_00028304-exon-sc0000673-1491911889:13313..13353Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1491911889:12661..12822TCONS_00028304-exon-sc0000673-1491911889:12661..12822Clytia hemisphaericaexon
TCONS_00028304-exon-sc0000673-1491911889:11344..11754TCONS_00028304-exon-sc0000673-1491911889:11344..11754Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028304-proteinTCONS_00028304-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000673supercontigsc0000673:11344..17755 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
724.898	713.552	911.206	937.021	270.582	211.453	193.185	189.322	212.212	167.676	93.3503	180.452	13.3375	13.5504	46.7578	112.793	16.6166	16.4998	10.6435	10.9496	4.03792	2.15569	259.881	217.328	0	0	12.2639	16.4382	92.4514	108.975
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002347SDR_fam
IPR016040NAD(P)-bd_dom
Blast
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BLAST of TCONS_00028304 vs. Swiss-Prot (Human)
Match: DCXR (L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.841e-31
Identity = 78/249 (31.33%), Postives = 129/249 (51.81%), Query Frame = 2 
Query:  338 SGKVVLVTGAGSGIGQGTAYMFAKSGAKMVVTDRNEGKLKETAKKCEELSKQTALAIVGDITVQSDIENIINTTMDTFKRLDVLVNNAGGLVMGTCLQTSTEDFDQMMNINVRSVFLITKMAIPHL--KKTQGNIVNVSTLGSSRPQIGVNAYCTSKAALDQFTRATAIELGADQVRVNCVNPSIIAT---ENTSSSNHPTISSAMERSKDVHALGRAGTVDEVASVICFLASGAASYMTGACIPIDGG 1069
            +G+ VLVTGAG GIG+GT      +GA++V   R +  L    ++C  +  +     +GD              + +   +D+LVNNA   ++   L+ + E FD+   +N+R+V  ++++    L  +   G IVNVS+  S R     + YC++K ALD  T+  A+ELG  ++RVN VNP+++ T   + T S  H    + + R      LG+   V+ V + I FL S  +   TG+ +P++GG
Sbjct:    6 AGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI--EPVCVDLGDWEAT-------ERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATWSDPHKA-KTMLNRIP----LGKFAEVEHVVNAILFLLSDRSGMTTGSTLPVEGG 240
The following BLAST results are available for this feature:
BLAST of TCONS_00028304 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DCXR1.841e-3131.33L-xylulose reductase OS=Homo sapiens GN=DCXR PE=1 ... [more]
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