TCONS_00028317 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028317
Unique NameTCONS_00028317
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length748

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028317 ID=TCONS_00028317|Name=TCONS_00028317|organism=Clytia hemisphaerica|type=transcript|length=748bp
aattgaagatgagaataTGCGTAGAGAAATAAGAGAAGCACAGTTAGCTG
AATCAACTAAAACACTATCTCCGGACCCTGATGAAATCGATGAATTTTGT
TCCCAAGAAGATTTGTCCTTCAATCCCTCAGCCTCGATGTCGATGAACCT
TAAGAGAAGCTCCCGGAAGAAAATCATACCACTCTCAAAAATAGTTGAAT
TGCATAAAGTATTACATCAGTTTAGTACAGAGCGCAAAGGTTCATATAAT
CGTAACGTGCCGGAGAATCTGGCCAAAGAGACATTAATGGAATGTGCAGC
AAACGCCAAGACCAGTGAACAATGGAATAATGTTTATGAACGTATGAGGG
AAGATGTAATTCAAGATTTGATCAGCAAAGAACAAAGACGTCATTCCATT
GACTGTAGTACAGATGATGGCATTCTTTTGCGCGAAGAGTATCAGACAGG
AGAAAAACATACAAAACTGAATTTAAAGGTAGGAGATAACCGCTCttata
atgggcttttccagaaatagtccgtgccccctgttgaggatatcggaggG
GTTCAGGGGGTAAAcgatttttgctcaaaagtggatatcaagggggttaa
atatctacaagggagcggataccCAGGGGgtaagtaaaaagtaaaaaata
cgatatccaggggtaagcatctttataagagatcCAGGGGATTGAGCATA
TTtgtaagagtggatatccagggggtctttgctaataaagtaggatat
Run BLAST on NCBI

transcript from alignment at sc0000673:125293..127640-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028317 ID=TCONS_00028317|Name=TCONS_00028317|organism=Clytia hemisphaerica|type=transcript|length=2348bp|location=Sequence derived from alignment at sc0000673:125293..127640- (Clytia hemisphaerica)
AATTGAAGATGAGAATATGCGTAGAGAAATAAGAGAAGCACAGTTAGCTG
AATCAACTAAAACACTATCTCCGGACCCTGATGAAATCGATGAATTTTGT
TCCCAAGAAGATTTGTCCTTCAATCCCTCAGCCTCGATGTCGATGAACCT
TAAGAGAAGCTCCCGGAAGAAAATCATACCACTCTCAAAAATAGTTGAAT
TGCATAAAGTATTACATCAGTTTAGTACAGAGCGCAAAGGTTCATATAAT
CGTAACGTGCCGGAGAATCTGGCCAAAGAGACATTAATGGAATGTGCAGC
AAACGCCAAGACCAGTGAACAATGGAATAATGTTTATGAACGTATGAGGG
AAGATGTAATTCAAGATTTGATCAGCAAAGAACAAAGACGTCATTCCATT
GACTGTAGTACAGGTAACTCAACATTTTCATCTCAATAGTATATCTGATG
TAACAGCTGGTCTCATGGGAGAAGGCACTGAGCCAGGGAAAGTCAATTCT
TTTAGAGAAATGACCCCTCCCTAGTAAGTAGTAAGTCTACGACCGCAGTC
GGAGGCGACCCGAAGGCTCCTCTTTTGATAGCTATCTACCCGAAGGTTGG
GGAGGGCGCCACTCTTTCTCCCTGGATTGATCCACTTACCCTTGAGAAAT
GACCCCCTCCCTAGAATGGACTTTGAAATGAACGAATAATCATAAAAATT
CCTTTACAATTTTCATTCGATATGATTTTTAGTTTCCAAAGACCTGGAGA
GGGGTACATCCTTCATACAAAAGGCGTCGTTTCAAAGTGTTGTTTCCAAG
AGATACTTTAATCAGCTTTTTTGAATGTTTTTATTTTCGTGACAAAATTT
GGGAAGCATGGGTGAGTTGCACCAAATCTGTACCGTGGTTTTGAAAACAA
GACAAACTGTCTTCAAATTGCCATAGAAGTAGATGTGTTAGGTATTAGAA
CTTGAGTTTTTGTGGATCTGGTACTGCGACAGAAGGTATCAGTCAGGACT
AAGTCATTTTTTGATACTTTGTTTTGTCTTTGAAATATTAGCAGAAATCT
TTGAGAGACAGGTCGTCCCATCTGTCACGCATATGCATTCACACAAATTT
TTGTTATAACTGAAAATGTGTGACGGACGGGACATACATAATTTTGTTGT
TTTCAAAGGTGAATTCGGCACAAGATGCTTATTTATTCAAGAACTGTATG
TTCTGAGAATTTATTTTTGTATTTTGAGTATTCTCCTATCAAGATGTGAC
CAAATAGTGGAGAAAACTGTAACAATTTTGATTAATGTTTCCTCTAAGAA
GCTTTAAACACTAAACTTTGCTTTGAAAACAACAAAATTGTGTCCTATCT
GTCACATGTTTTCAGTTATAACTCAAGTTTGGTTCAAGAAAAATGCTTGT
AACTTTCAAATCATATACTTCCATTATAGAGTAACACTTTTACATAAAAT
TGACAAGAATTTAGAAGGCCAAATTTAAAATTGTGTTGAAGGAAGATAGG
CATATGCGTGACGGACGGGACGTCCCGTCCATCACAGATTTGAGCTAATA
TTATTTCAAAGACAAAATAAAATATCAAAAAGTGACTTTTANGGGGGGGG
GGGGGGGGTGCACACTATGCGGGACGTCCCGTCCATCTCAGATTTGAGCT
AATATTTCAAAGACAAAATAAAATATCAAAAAGTGACTTTTAGCTCTGAC
TGATACTTTCTGCCACAGTACCAAATCCACAAAAACTTAAGCTCTAATAC
CTAACACATTCACTTCTATGGTACTTTGAATACAGTTTGCTTTGTTTACG
AAACCACGGTACAGATTTGGCGCAATTCACCCATATAAACTGCCAATGAT
AGTAAAATGAATTTATTCTTTTTCTTAGCCTAAAACTAGGCCCGAAATGA
TTTTATGTGTTTCGAGAAGAGTGTATTGATTGACCTTGAAAACCCTACAC
CAACCCTAGGATCGACTTGGCTTTGGGCTAGAACAAACAAAATATTTCTT
TCTTGTGTTTTAGATGATGGCATTCTTTTGCGCGAAGAGTATCAGACAGG
AGAAAAACATACAAAACTGAATTTAAAGGTAGGAGATAACCGCTCTTATA
ATGGGCTTTTCCAGAAATAGTCCGTGCCCCCTGTTGAGGATATCGGAGGG
GTTCAGGGGGTAAACGATTTTTGCTCAAAAGTGGATATCAAGGGGGTTAA
ATATCTACAAGGGAGCGGATACCCAGGGGGTAAGTAAAAAGTAAAAAATA
CGATATCCAGGGGTAAGCATCTTTATAAGAGATCCAGGGGATTGAGCATA
TTTGTAAGAGTGGATATCCAGGGGGTCTTTGCTAATAAAGTAGGATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016040XLOC_016040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028317-exon-sc0000673-1575043694:127228..127640TCONS_00028317-exon-sc0000673-1575043694:127228..127640Clytia hemisphaericaexon
TCONS_00028317-exon-sc0000673-1575043694:125293..125627TCONS_00028317-exon-sc0000673-1575043694:125293..125627Clytia hemisphaericaexon
TCONS_00028317-exon-sc0000673-1510915933:127228..127640TCONS_00028317-exon-sc0000673-1510915933:127228..127640Clytia hemisphaericaexon
TCONS_00028317-exon-sc0000673-1510915933:125293..125627TCONS_00028317-exon-sc0000673-1510915933:125293..125627Clytia hemisphaericaexon
TCONS_00028317-exon-sc0000673-1491911889:127228..127640TCONS_00028317-exon-sc0000673-1491911889:127228..127640Clytia hemisphaericaexon
TCONS_00028317-exon-sc0000673-1491911889:125293..125627TCONS_00028317-exon-sc0000673-1491911889:125293..125627Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000673supercontigsc0000673:125293..127640 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.206073	0	0.00132824	0.000601876	0	0.000986451	0.00114259	1.40415	0	0.252635	0.0900554	0.0318894	0	0	0	0	0	0	0	0.427128	0	0.476839	0.453166	2.70767e-05	0	0	0.355454	3.91953e-07
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028317 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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