TCONS_00028319 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028319
Unique NameTCONS_00028319
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length575

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028319 ID=TCONS_00028319|Name=TCONS_00028319|organism=Clytia hemisphaerica|type=transcript|length=575bp
gtgcatttttagaaaaaaatgtagGAAAGCAAAAGATAATGCGACTCTGA
ATGTTTTTTCTCTGTGCAACCAAGTCAGATTGTCACATTCcgcacatccc
tttagagcagagcaTGATACATGCAGAATgaatgatctgttatgagaatA
AGGTAATGTATGAatctataaaaataaatttattaaaaatgaaaatagta
gGAAGGTTTTTCTTTGGACTCAGTTCAGCTAATTCCAATTCTTTTTAGAT
CAAGACAAAACACACGAAACACTACACATTACACAACTATTGGAATAAAT
ATaagaagtaaaaaaataaataatgtttGGGTCAAAAACCCCTTTTGGAA
GTGGTGGATTTGGGTCTACAAATAGTGCATTTGGATCACAATCATCCACA
CCATTTGGTGGTTCTACCTCTGGAGgACTTTTTGGTAGCAGTACAACGCC
ACAGGCTGGTTCCTTTGGCACACCTAGTTTTGgttcaacaactcctgctg
caggGGGTTTATTTGGAGGTACTTCATCTGGAGGAACTAGCCTTTTTGGA
AATAAGACAACTCAATCATCTGgta
Run BLAST on NCBI

transcript from alignment at sc0000673:180871..181573-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028319 ID=TCONS_00028319|Name=TCONS_00028319|organism=Clytia hemisphaerica|type=transcript|length=703bp|location=Sequence derived from alignment at sc0000673:180871..181573- (Clytia hemisphaerica)
GTGCATTTTTAGAAAAAAATGTAGGAAAGCAAAAGATAATGCGACTCTGA
ATGTTTTTTCTCTGTGCAACCAAGTCAGATTGTCACATTCCGCACATCCC
TTTAGAGCAGAGCATGATACATGCAGAATGAATGATCTGTTATGAGAATA
AGGTAATGTATGAATCTATAAAAATAAATTTATTAAAAATGAAAATAGTA
GGAAGGTTTTTCTTTGGACTCAGTTCAGCTAATTCCAATTCTTTTTAGAT
CAAGACAAAACACACGAAACACTACACATTACACAACTATTGGAATAAAT
ATAAGAAGTAAAAAAATAAATAATGTTTGGGTCAAAAACCCCTTTTGGAA
GTGGTGGATTTGGGTCTACAAATAGTGCATTTGGATCACAATCATCCACA
CCATTTGGTGGTTCTACCTCTGGAGGTAAGTGAAAGTTAGCTTCTAGTTG
GTTGTAATATGTCAATTCAACACCTTTTACGAAACAAACATTTTTGTTCG
CTCATGTCCATATTTTAGCATTATCAAAAACTTTTTTTTTTAATTTTTCT
CAGGACTTTTTGGTAGCAGTACAACGCCACAGGCTGGTTCCTTTGGCACA
CCTAGTTTTGGTTCAACAACTCCTGCTGCAGGGGGTTTATTTGGAGGTAC
TTCATCTGGAGGAACTAGCCTTTTTGGAAATAAGACAACTCAATCATCTG
GTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016041XLOC_016041Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028319-exon-sc0000673-1575043694:181149..181573TCONS_00028319-exon-sc0000673-1575043694:181149..181573Clytia hemisphaericaexon
TCONS_00028319-exon-sc0000673-1575043694:180871..181020TCONS_00028319-exon-sc0000673-1575043694:180871..181020Clytia hemisphaericaexon
TCONS_00028319-exon-sc0000673-1510915933:181149..181573TCONS_00028319-exon-sc0000673-1510915933:181149..181573Clytia hemisphaericaexon
TCONS_00028319-exon-sc0000673-1510915933:180871..181020TCONS_00028319-exon-sc0000673-1510915933:180871..181020Clytia hemisphaericaexon
TCONS_00028319-exon-sc0000673-1491911889:181149..181573TCONS_00028319-exon-sc0000673-1491911889:181149..181573Clytia hemisphaericaexon
TCONS_00028319-exon-sc0000673-1491911889:180871..181020TCONS_00028319-exon-sc0000673-1491911889:180871..181020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000673supercontigsc0000673:180871..181573 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.7953	11.8157	35.2308	36.0785	41.8306	30.576	25.0493	24.2676	10.6189	14.3674	11.0974	7.94055	10.4437	12.3188	11.1185	15.7713	15.6451	13.9473	6.38865	5.17568	13.1209	11.9313	9.22481	13.0347	24.2491	29.351	4.12038	3.40442	8.39193	9.5366
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028319 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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