TCONS_00028322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028322
Unique NameTCONS_00028322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length304

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028322 ID=TCONS_00028322|Name=TCONS_00028322|organism=Clytia hemisphaerica|type=transcript|length=304bp
ATTGTTTGAATGGTTAAGGTTTGTTGCTTGATTCTGACAGGCATATCATT
TGATACTTAAAGTACATAATTTCCCTCCCTTTCTAAATATTTTGTCTGCC
CTTTTCTTATGCTTCACATactattgttcttaaacaatagagccattgtt
taggtaccaaaaactgagatTACATATACTTAAATGTGgtttcagaaaaa
agaaaaaaaacaaaaaaaacatgtgATCCGAAGAATGGTACTAGAGGCTG
ATTGAAACATTGCCTTGTGGGCAGGTGAAAATCTAGAATAATGTGAAGGT
GTTG
Run BLAST on NCBI

transcript from alignment at sc0000673:5422..5725

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028322 ID=TCONS_00028322|Name=TCONS_00028322|organism=Clytia hemisphaerica|type=transcript|length=304bp|location=Sequence derived from alignment at sc0000673:5422..5725 (Clytia hemisphaerica)
CAACACCTTCACATTATTCTAGATTTTCACCTGCCCACAAGGCAATGTTT
CAATCAGCCTCTAGTACCATTCTTCGGATcacatgttttttttgtttttt
ttcttttttctgaaacCACATTTAAGTATATGTAatctcagtttttggta
cctaaacaatggctctattgtttaagaacaatagtATGTGAAGCATAAGA
AAAGGGCAGACAAAATATTTAGAAAGGGAGGGAAATTATGTACTTTAAGT
ATCAAATGATATGCCTGTCAGAATCAAGCAACAAACCTTAACCATTCAAA
CAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016044XLOC_016044Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028322-exon-sc0000673-1491911889:5422..5725TCONS_00028322-exon-sc0000673-1491911889:5422..5725Clytia hemisphaericaexon
TCONS_00028322-exon-sc0000673-1510915933:5422..5725TCONS_00028322-exon-sc0000673-1510915933:5422..5725Clytia hemisphaericaexon
TCONS_00028322-exon-sc0000673-1575043694:5422..5725TCONS_00028322-exon-sc0000673-1575043694:5422..5725Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000673supercontigsc0000673:5422..5725 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.363851	0	0	2.61286	3.64558	2.50997	3.78681	0.628843	2.82559	0.378021	0.251626	1.6939	0.792004	0.709477	2.58967	0.840364	2.33875	0.396635	1.27759	0.360754	0.52789	0	0	2.40391	5.46182	0	0	0.414135	0.421938
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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