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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028327 ID=TCONS_00028327|Name=TCONS_00028327|organism=Clytia hemisphaerica|type=transcript|length=849bp
tttttaaatatttttgttatatttaTTTTGTAGAAGATTATAATTATTTA
CAACCTTAACAAAAAAACACTTTGTCCTTATTTTCACGACAGCAAACCAA
ATACGTCAGCACATCAATTAGTCCGTCAGTGCTTTCTATTTTGAAACATT
ACGCTAAACTAATTAACAGTTATTTAAGTAAACATGACAAATCCTTTTTT
GCCTGGCACCGATGTTTATCGTCACATGCTCAATAAACCAGACACAAGAA
ACCAGCTGGATACCAACCCAATATAGAATCGGAAGTTCCCTAGCTTCATA
TCTGCGGCACTACTTGAATAGCCTTTGGCATTTGCGTTGTTTTCACCGCC
ATATCTGGTCATTTCACCGTCGGTTGCCGTCCCTCTATTTCCTCCAACAT
TGTCCCAATTTGGTACACCATCATCTTCTCCAGGACCTCCTCCTCCTAAC
AGGTCTATTCCTGTGACAGTATCGTTATATCTAATCGGGGAAGATAGGGT
GGTTTTTACGGTGGGCGGTGCATCTGTGGTTGTTGTAGTTGACGTCGTTT
TTGTTGTATCGCCGCCTGGTGGTGGGAAGAAGCCGCCTGGTGGCATGCCA
GTAGAAACGAAATGGTATTTTGTTATCATCACTGTCATAGCGATGCGAAG
GATTGTTGCCATCGACATTTTCTCTGATGCAATCTTATTCCAGTTTGCCT
TATTAGCAGTTATAGTGTACTTTGCTGTTGACACCTTTATGCCGAGGATG
TGATCTCTACGTTTAAGTCTTGTCTTTTATACTGATATAGACTATATCTA
TCCATATCTCATAAACTTACTCCAATCTGATAGTAGTATTTGTTTGGAC Run BLAST on NCBI protein sequence of TCONS_00028327-protein >TCONS_00028327-protein ID=TCONS_00028327-protein|Name=TCONS_00028327-protein|organism=Clytia hemisphaerica|type=polypeptide|length=148bp
MSMATILRIAMTVMITKYHFVSTGMPPGGFFPPPGGDTTKTTSTTTTTDA
PPTVKTTLSSPIRYNDTVTGIDLLGGGGPGEDDGVPNWDNVGGNRGTATD
GEMTRYGGENNANAKGYSSSAADMKLGNFRFYIGLVSSWFLVSGLLSM Run BLAST on NCBI transcript from alignment at sc0000673:119519..120367 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028327 ID=TCONS_00028327|Name=TCONS_00028327|organism=Clytia hemisphaerica|type=transcript|length=849bp|location=Sequence derived from alignment at sc0000673:119519..120367 (Clytia hemisphaerica)
GTCCAAACAAATACTACTATCAGATTGGAGTAAGTTTATGAGATATGGAT
AGATATAGTCTATATCAGTATAAAAGACAAGACTTAAACGTAGAGATCAC
ATCCTCGGCATAAAGGTGTCAACAGCAAAGTACACTATAACTGCTAATAA
GGCAAACTGGAATAAGATTGCATCAGAGAAAATGTCGATGGCAACAATCC
TTCGCATCGCTATGACAGTGATGATAACAAAATACCATTTCGTTTCTACT
GGCATGCCACCAGGCGGCTTCTTCCCACCACCAGGCGGCGATACAACAAA
AACGACGTCAACTACAACAACCACAGATGCACCGCCCACCGTAAAAACCA
CCCTATCTTCCCCGATTAGATATAACGATACTGTCACAGGAATAGACCTG
TTAGGAGGAGGAGGTCCTGGAGAAGATGATGGTGTACCAAATTGGGACAA
TGTTGGAGGAAATAGAGGGACGGCAACCGACGGTGAAATGACCAGATATG
GCGGTGAAAACAACGCAAATGCCAAAGGCTATTCAAGTAGTGCCGCAGAT
ATGAAGCTAGGGAACTTCCGATTCTATATTGGGTTGGTATCCAGCTGGTT
TCTTGTGTCTGGTTTATTGAGCATGTGACGATAAACATCGGTGCCAGGCA
AAAAAGGATTTGTCATGTTTACTTAAATAACTGTTAATTAGTTTAGCGTA
ATGTTTCAAAATAGAAAGCACTGACGGACTAATTGATGTGCTGACGTATT
TGGTTTGCTGTCGTGAAAATAAGGACAAAGTGTTTTTTTGTTAAGGTTGT
AAATAATTATAATCTTCTACAAAAtaaatataacaaaaatatttaaaaa Coding sequence (CDS) from alignment at sc0000673:119519..120367 >TCONS_00028327 ID=TCONS_00028327|Name=TCONS_00028327|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at sc0000673:119519..120367 (Clytia hemisphaerica)
ATGTCGATGGCAACAATCCTTCGCATCGCTATGACAGTGATGATAACAAA
ATACCATTTCGTTTCTACTGGCATGCCACCAGGCGGCTTCTTCCCACCAC
CAGGCGGCGATACAACAAAAACGACGTCAACTACAACAACCACAGATGCA
CCGCCCACCGTAAAAACCACCCTATCTTCCCCGATTAGATATAACGATAC
TGTCACAGGAATAGACCTGTTAGGAGGAGGAGGTCCTGGAGAAGATGATG
GTGTACCAAATTGGGACAATGTTGGAGGAAATAGAGGGACGGCAACCGAC
GGTGAAATGACCAGATATGGCGGTGAAAACAACGCAAATGCCAAAGGCTA
TTCAAGTAGTGCCGCAGATATGAAGCTAGGGAACTTCCGATTCTATATTG
GGTTGGTATCCAGCTGGTTTCTTGTGTCTGGTTTATTGAGCATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028327-exon-sc0000673-1491911889:119519..120367 | TCONS_00028327-exon-sc0000673-1491911889:119519..120367 | Clytia hemisphaerica | exon |
| TCONS_00028327-exon-sc0000673-1510915933:119519..120367 | TCONS_00028327-exon-sc0000673-1510915933:119519..120367 | Clytia hemisphaerica | exon |
| TCONS_00028327-exon-sc0000673-1575043694:119519..120367 | TCONS_00028327-exon-sc0000673-1575043694:119519..120367 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000673 | supercontig | sc0000673:119519..120367 . |
Blast
The following BLAST results are available for this feature:
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