TCONS_00028333 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028333
Unique NameTCONS_00028333
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028333 ID=TCONS_00028333|Name=TCONS_00028333|organism=Clytia hemisphaerica|type=transcript|length=1566bp
CATTCCATCCATATATTCAGCTGAGACATACGTAATATTAGatttctttc
aaacaaagATGGTACAGCCATAATAACACCTTCAACTATGAATGCAAAAG
GGCATCAACAGAGTTATCCAACCACGTTTGGGACCTGCAAATCAAAAACA
TACAACCAAAATTATCATGGGAGATTATCGACCACGCCCGCTCGTATTTT
AAAGGCTTGGTAAACTGCAACATCTGTCTCACAGAAAAATTTCACTTAAT
TACATCAGAGCTTCATCTCGTAAACAAAAGATCAGAACTTATTTCCACAT
GTCGCCATAACAACAGATTTAATCTGAAGAACTTCAAATTGGTCCCCCCC
CCGGATGAAtcatgaattttattttcaatatgttttaataattgttttta
ttacagTTTTATTGCACAAATTATCCAGTTTTTCACATTCAAGGAATGCT
TGAAAGGGATTAGttcgtcaaaaaaaaggttggtATCATAGCTTTGAATG
GGCTTTGAAtagttttgattgttttaagttgtatatttatttttagtatA
TTTGTTTTATATCAACAAACATATCAATCAAAAATATACACAATATGGTT
GGTTTGATGGGTTTGATTCCTACTAGCATGTTCGTCTTCACCAAAAATAT
TGTCAAGCAGTCTGGATTAAGAGCACCATGAACGCTTGCGCAGAGTCAAC
CCAGCGCTGCCCAAGAGAGCTGGATGAATTGGCAGATCGCAGTCAAGTAT
TCAAACCTTCCAATGTCAACAACAGACCCTGCCACCCTTTCAAAATCATA
CCAGCCGTCCAAAGAACAACAAACACTATCTTTAACTTATCAATGATTTT
CAGAATCCAGATGGCACATGTAAGGATAGACCAGGAAAATCGCAGCATGG
ACATAAGATGAAAGGTTATGCTGAACTTGACAACACAGGATtataaaatt
ttggaaatacatatttctaaattttaatagTCCCTTTTCTGAAAGTGAAA
GAAATGACTTGGGAggtaatttattcaaaaaaacaaacaatgcaTCTGTC
TCCTATTAGGAATGCATTAGTCGACAAGAGGTGACCAAGCAAAGGCCTGG
TAATATGATGTTGTTTTCGCCTAAAAAACCACATAACAAAAATCATGGCC
TTTGATAAAAGTTACAAAATAGACATACAAATAGCATTTCATATTCTGAC
CACAAGATGTGTTtcacaaaagtttcaaaactttgatgATGTGATCAAAA
Atgaacaagacgacttaaagtcgaaaatttcgcataatacttgaacatca
acgacgaagacgcgtgaaacgtgactcctgcagcattatgcattttgaat
gaagcgttacacaaaatatacacaatgcattgtacacacaggtcatagat
accctgtttttttaatgaaaaatctcaatccattaaaaaaaagattcctt
taAAAATGCGACTTAAGAATTCTattctataaagcgtaaacaaaatcttt
caattcagaataattcagagaactgcaatatacttgagaaaaataattta
aaatttttttgaaaac
Run BLAST on NCBI

transcript from alignment at sc0000674:161059..166431+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028333 ID=TCONS_00028333|Name=TCONS_00028333|organism=Clytia hemisphaerica|type=transcript|length=5373bp|location=Sequence derived from alignment at sc0000674:161059..166431+ (Clytia hemisphaerica)
CATTCCATCCATATATTCAGCTGAGACATACGTAATATTAGGTAAGAACT
TGTTTATTTACATCCACCAGAACTCCCTATAAAATACATTTCTGTCAGTG
ATGAATTGTCTTAAATGTATTTCTAAAATCAtcttaaaaacaaatttgcc
tcttgcaaatcattatctAATGTAAAGTTACCAAACTGTAAGGGATTGAT
TAATCATATTCCAAAAACTGTTCTATTCTTTGTACAGAGCTTTTGATACG
ATGCGACATAGGGTAGatatcaattttcaattatttcatGGCTTTGTTTC
AAAATAAACTTCTGAAGGAGGTATAAATTAATTGCTGAAAGGGCAATCAT
AGATCGATTTAgagggaaaatttttattttcatcgtTTTTATGGCAAACT
NACTTCTGAAGGAGGTATAAATTAATTGCTGAAAGGGCAATCATAGATCG
ATTTAgagggaaaatttttattttcatcgtTTTTATGGCAAACTCATCTT
GTTCCGaagatttctttgaaaaattgatggttttttttagcagatttctt
tcaaacaaagATGGTACAGCCATTATAACACCTTCAACTATGAATGCAAA
AGGGCATCAACAGAGTTATCCAACCACGTTAGGGACCTGcaatttatcaa
aaacatacaACCAAAATTATCATGGGAGATTATCGACCACGCCCGCTCGT
ATGTCAACGGCTTGATAAACTGCAACCTCTGTCTCACAGAAAAATTTCAC
TTAATTACATCAGAGCTTCATCTCGTACAAAAGATCAGAATTTATTTCCA
CATGTCNcacgacaattcactcaacatgctccattttttaaaaagtgaaa
ccctggcattcatttgcttagaccgagcatagcattgaatattgtgttac
atgctttcagaatgaacagagccaatgacgggtaaatattttgaacttgt
gttcacgacaattcactcaacatgctccaatttttttaaataaaaattga
aacactggcattcatttgcttagaccgagcatagcattgaatattgtgtt
tacatgctttcagaatgaacagagccaatgacgggtaaatattttgaaCT
TGTATTCACGACAATTCACTCAACATGCTCCATTTTTTAAAAAATTGAAA
CCCTGGCATTCTTTTGCTTAGACCGAGCATAGCAGTGAATATTGTGTtta
catgctttcagaatgaacagagccaatgacttgtaaatattttgaacttg
tattcacgacaattcactcaacatgctccattttttaaaaagtgaaaccc
tggcattcatttgcttagaccgagaatagcagtgaatattgtgtttacat
gttttcagaatgaacagagccaatgacgggtaaatattttgaacttgtat
tcacgacaattcactcaacatgctccattttttTAaataaaaagtgaaac
cccgGCATTCATTTGcgtagaccgagcatagcattgaatattgtgtttac
atgctttcagaatgaacagagccaatgacgagtaaatattttgaacttgt
attcacgacaattcactcaacatgctccattttttaaaaagtgaaaccct
ggcattcatttgcctagaccgagcatagcagtgaatattgtgtttacatg
ctttcagaatgaacagagccaatgacgggaaaatattttgagcttGTATT
CACAACaatgcaaaagaaaaaacaccagAGGAAAAAGGAAACAGCGAAAA
GACACAAAGATTGCCATCCGCATATTGTGGTCAAGTTGACAATTTTTGTT
GGCCTTTAAAAAGCCTGGAGGTGGATACTTATAgtaactaattttttttt
aattttttctttaggtATAATAGATCAAATAAGCACCAGAATACCCCTGT
TCAttgctttgatttttttatcactttattttttaataggTGTCAGTGAA
TCTTACTGGATTACTTTAAacaatttattgcaaattttttgaagcctggA
GACAACTCAATCACTAAAATCATTAATGAAGGAAGATGTAAAAACTTTTA
TGGCGATGATGTCATATGCCAAGTANTATGAAGgaagattttaaaaactt
ttatggCGATGATGTCATATGCCAAGTACATCAGATTATCATAAAATTAA
CGTTCCTGTGACACCATAATGTGAATCAGCAGATTGAAGATTCAAATCGA
GTTTCAGTTGTCAAGTCATGAAGTAATAGATTACGATGACGATTGCATAG
AGTATGTTTGATCCACGCAAGGACTCATGTTGGTTTGGCCTAAAGAGGTA
AAAGAAGATCTCCTTTTTATCTTATTAAAGTAGCTTTCACATGAGGGACA
AGTAAAGATTCCCTCATTTTTGATAATATGAATCTTCTTTATATTGAAAA
TGCGATTATTAGATTCAAACCATTTATGAAAGTAATAATGCGGCTTTGTC
TAACTTAGTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCAATCATTCCATCCATATATTCAGCTGAGA
CATACGTAATATTAGGTAAGAACTTGTTTATTTACATCCACCAGAACTCC
CTATAAAATACATTTCTGTCAGTGATGAATTGTCTTAAATGTATTTCTAA
AATCATCTTAAACAAATTTGCCTCTTGCAAATCATATCTAATGTAAAGTT
ACCAAACTGTAAGGGATTGATTAATCATATTCCCAAACCTGTTCTATGTT
TTGTTCAGAGCTTTGTATACGATGCCACATAGGGTAaatatcaattttca
attatttcatGGCTTTGTTTCAAAATAAACTTCTGAAGGAGGTATAAATT
AATTGCTGAAAGGGCAATCATAGATCGATTTAgagggaaaatttttattt
tcatcgtTTTTATGGCAAACTCATCTTGTTCCGaagatttctttgaaaaa
ttgatggttttttttagcagatttctttcaaacaaagATGGTACAGCCAT
TATAACACCTTCAACTATGAATGCAAAAGGGNCGTTTTTTTTTAgtagat
ttctttcaaacaaagATGGTACAGCCATAATAACACCTTCAACTATGAAT
GCAAAAGGGCATCAACAGAGTTATCCAACCACGTTTGGGACCTGCAAATC
AAAAACATACAACCAAAATTATCATGGGAGATTATCGACCACGCCCGCTC
GTATTTTAAAGGCTTGGTAAACTGCAACATCTGTCTCACAGAAAAATTTC
ACTTAATTACATCAGAGCTTCATCTCGTAAACAAAAGATCAGAACTTATT
TCCACATGTCGCCATAACAACAGATTTAATCTGAAGAACTTCAAATTGGT
CCCCCCCCCGGATGAAtcatgaattttattttcaatatgttttaataatt
gtttttattacagTTTTATTGCACAAATTATCCAGTTTTTCACATTCAAG
GAATGCTTGAAAGGGATTAGttcgtcaaaaaaaaggttggtATCATAGCT
TTGAATGGGCTTTGAAtagttttgattgttttaagttgtatatttatttt
tagtatATTTGTTTTATATCAACAAACATATCAATCAAAAATATACACAA
TATGGTTGGTTTGATGGGTTTGATTCCTACTAGCATGTTCGTCTTCACCA
AAAATATTGTCAAGCAGTCTGGATTAAGAGCACCATGAACGCTTGCGCAG
AGTCAACCCAGCGCTGCCCAAGAGAGCTGGATGAATTGGCAGATCGCAGT
CAAGTATTCAAACCTTCCAATGTCAACAACAGACCCTGCCACCCTTTCAA
AATCATACCAGCCGTCCAAAGAACAACAAACACTATCTTTAACTTATCAA
TGATTTTCAGAATCCAGATGGCACATGTAAGGATAGACCAGGAAAATCGC
AGCATGGACATAAGATGAAAGGTTATGCTGAACTTGACAACACAGGATta
taaaattttggaaatacatatttctaaattttaatagTCCCTTTTCTGAA
AGTGAAAGAAATGACTTGGGAggtaatttattcaaaaaaacaaacaatgc
aTCTGTCTCCTATTAGGAATGCATTAGTCGACAAGAGGTGACCAAGCAAA
GGCCTGGTAATATGATGTTGTTTTCGCCTAAAAAACCACATAACAAAAAT
CATGGCCTTTGATAAAAGTTACAAAATAGACATACAAATAGCATTTCATA
TTCTGACCACAAGATGTGTTtcacaaaagtttcaaaactttgatgATGTG
ATCAAAAAtgaacaagacgacttaaagtcgaaaatttcgcataatacttg
aacatcaacgacgaagacgcgtgaaacgtgactcctgcagcattatgcat
tttgaatgaagcgttacacaaaatatacacaatgcattgtacacacaggt
catagataccctgtttttttaatgaaaaatctcaatccattaaaaaaaag
attcctttaAAAATGCGACTTAAGAATTCTattctataaagcgtaaacaa
aatctttcaattcagaataattcagagaactgcaatatacttgagaaaaa
taatttaaaatttttttgaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016055XLOC_016055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028333-exon-sc0000674-1491911889:161059..161099TCONS_00028333-exon-sc0000674-1491911889:161059..161099Clytia hemisphaericaexon
TCONS_00028333-exon-sc0000674-1510915933:161059..161099TCONS_00028333-exon-sc0000674-1510915933:161059..161099Clytia hemisphaericaexon
TCONS_00028333-exon-sc0000674-1575043694:161059..161099TCONS_00028333-exon-sc0000674-1575043694:161059..161099Clytia hemisphaericaexon
TCONS_00028333-exon-sc0000674-1491911889:164907..166431TCONS_00028333-exon-sc0000674-1491911889:164907..166431Clytia hemisphaericaexon
TCONS_00028333-exon-sc0000674-1510915933:164907..166431TCONS_00028333-exon-sc0000674-1510915933:164907..166431Clytia hemisphaericaexon
TCONS_00028333-exon-sc0000674-1575043694:164907..166431TCONS_00028333-exon-sc0000674-1575043694:164907..166431Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000674supercontigsc0000674:161059..166431 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.212697	4.9753e-09	0.185027	0.299988	0.70878	0.253928	0.893797	0	0.487814	0	0.58327	0	0	0.408893	0	0	0.103186	0.263185	0.584637	0.44247	0.260247	0.0373405	0	0.316999	0.00808708	0.213421	0.45281
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028333 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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