TCONS_00028334 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028334
Unique NameTCONS_00028334
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028334 ID=TCONS_00028334|Name=TCONS_00028334|organism=Clytia hemisphaerica|type=transcript|length=1568bp
ATTCCATCCATATATTCAGCTGAGACATACGTAATATTAGtagatttctt
tcaaacaaagATGGTACAGCCATAATAACACCTTCAACTATGAATGCAAA
AGGGCATCAACAGAGTTATCCAACCACGTTTGGGACCTGCAAATCAAAAA
CATACAACCAAAATTATCATGGGAGATTATCGACCACGCCCGCTCGTATT
TTAAAGGCTTGGTAAACTGCAACATCTGTCTCACAGAAAAATTTCACTTA
ATTACATCAGAGCTTCATCTCGTAAACAAAAGATCAGAACTTATTTCCAC
ATGTCGCCATAACAACAGATTTAATCTGAAGAACTTCAAATTGGTCCCCC
CCCCGGATGAAtcatgaattttattttcaatatgttttaataattgtttt
tattacagTTTTATTGCACAAATTATCCAGTTTTTCACATTCAAGGAATG
CTTGAAAGGGATTAGttcgtcaaaaaaaaggttggtATCATAGCTTTGAA
TGGGCTTTGAAtagttttgattgttttaagttgtatatttatttttagta
tATTTGTTTTATATCAACAAACATATCAATCAAAAATATACACAATATGG
TTGGTTTGATGGGTTTGATTCCTACTAGCATGTTCGTCTTCACCAAAAAT
ATTGTCAAGCAGTCTGGATTAAGAGCACCATGAACGCTTGCGCAGAGTCA
ACCCAGCGCTGCCCAAGAGAGCTGGATGAATTGGCAGATCGCAGTCAAGT
ATTCAAACCTTCCAATGTCAACAACAGACCCTGCCACCCTTTCAAAATCA
TACCAGCCGTCCAAAGAACAACAAACACTATCTTTAACTTATCAATGATT
TTCAGAATCCAGATGGCACATGTAAGGATAGACCAGGAAAATCGCAGCAT
GGACATAAGATGAAAGGTTATGCTGAACTTGACAACACAGGATtataaaa
ttttggaaatacatatttctaaattttaatagTCCCTTTTCTGAAAGTGA
AAGAAATGACTTGGGAggtaatttattcaaaaaaacaaacaatgcaTCTG
TCTCCTATTAGGAATGCATTAGTCGACAAGAGGTGACCAAGCAAAGGCCT
GGTAATATGATGTTGTTTTCGCCTAAAAAACCACATAACAAAAATCATGG
CCTTTGATAAAAGTTACAAAATAGACATACAAATAGCATTTCATATTCTG
ACCACAAGATGTGTTtcacaaaagtttcaaaactttgatgATGTGATCAA
AAAtgaacaagacgacttaaagtcgaaaatttcgcataatacttgaacat
caacgacgaagacgcgtgaaacgtgactcctgcagcattatgcattttga
atgaagcgttacacaaaatatacacaatgcattgtacacacaggtcatag
ataccctgtttttttaatgaaaaatctcaatccattaaaaaaaagattcc
tttaAAAATGCGACTTAAGAATTCTattctataaagcgtaaacaaaatct
ttcaattcagaataattcagagaactgcaatatacttgagaaaaataatt
taaaatttttttgaaaac
Run BLAST on NCBI

transcript from alignment at sc0000674:161060..166431+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028334 ID=TCONS_00028334|Name=TCONS_00028334|organism=Clytia hemisphaerica|type=transcript|length=5372bp|location=Sequence derived from alignment at sc0000674:161060..166431+ (Clytia hemisphaerica)
ATTCCATCCATATATTCAGCTGAGACATACGTAATATTAGGTAAGAACTT
GTTTATTTACATCCACCAGAACTCCCTATAAAATACATTTCTGTCAGTGA
TGAATTGTCTTAAATGTATTTCTAAAATCAtcttaaaaacaaatttgcct
cttgcaaatcattatctAATGTAAAGTTACCAAACTGTAAGGGATTGATT
AATCATATTCCAAAAACTGTTCTATTCTTTGTACAGAGCTTTTGATACGA
TGCGACATAGGGTAGatatcaattttcaattatttcatGGCTTTGTTTCA
AAATAAACTTCTGAAGGAGGTATAAATTAATTGCTGAAAGGGCAATCATA
GATCGATTTAgagggaaaatttttattttcatcgtTTTTATGGCAAACTN
ACTTCTGAAGGAGGTATAAATTAATTGCTGAAAGGGCAATCATAGATCGA
TTTAgagggaaaatttttattttcatcgtTTTTATGGCAAACTCATCTTG
TTCCGaagatttctttgaaaaattgatggttttttttagcagatttcttt
caaacaaagATGGTACAGCCATTATAACACCTTCAACTATGAATGCAAAA
GGGCATCAACAGAGTTATCCAACCACGTTAGGGACCTGcaatttatcaaa
aacatacaACCAAAATTATCATGGGAGATTATCGACCACGCCCGCTCGTA
TGTCAACGGCTTGATAAACTGCAACCTCTGTCTCACAGAAAAATTTCACT
TAATTACATCAGAGCTTCATCTCGTACAAAAGATCAGAATTTATTTCCAC
ATGTCNcacgacaattcactcaacatgctccattttttaaaaagtgaaac
cctggcattcatttgcttagaccgagcatagcattgaatattgtgttaca
tgctttcagaatgaacagagccaatgacgggtaaatattttgaacttgtg
ttcacgacaattcactcaacatgctccaatttttttaaataaaaattgaa
acactggcattcatttgcttagaccgagcatagcattgaatattgtgttt
acatgctttcagaatgaacagagccaatgacgggtaaatattttgaaCTT
GTATTCACGACAATTCACTCAACATGCTCCATTTTTTAAAAAATTGAAAC
CCTGGCATTCTTTTGCTTAGACCGAGCATAGCAGTGAATATTGTGTttac
atgctttcagaatgaacagagccaatgacttgtaaatattttgaacttgt
attcacgacaattcactcaacatgctccattttttaaaaagtgaaaccct
ggcattcatttgcttagaccgagaatagcagtgaatattgtgtttacatg
ttttcagaatgaacagagccaatgacgggtaaatattttgaacttgtatt
cacgacaattcactcaacatgctccattttttTAaataaaaagtgaaacc
ccgGCATTCATTTGcgtagaccgagcatagcattgaatattgtgtttaca
tgctttcagaatgaacagagccaatgacgagtaaatattttgaacttgta
ttcacgacaattcactcaacatgctccattttttaaaaagtgaaaccctg
gcattcatttgcctagaccgagcatagcagtgaatattgtgtttacatgc
tttcagaatgaacagagccaatgacgggaaaatattttgagcttGTATTC
ACAACaatgcaaaagaaaaaacaccagAGGAAAAAGGAAACAGCGAAAAG
ACACAAAGATTGCCATCCGCATATTGTGGTCAAGTTGACAATTTTTGTTG
GCCTTTAAAAAGCCTGGAGGTGGATACTTATAgtaactaattttttttta
attttttctttaggtATAATAGATCAAATAAGCACCAGAATACCCCTGTT
CAttgctttgatttttttatcactttattttttaataggTGTCAGTGAAT
CTTACTGGATTACTTTAAacaatttattgcaaattttttgaagcctggAG
ACAACTCAATCACTAAAATCATTAATGAAGGAAGATGTAAAAACTTTTAT
GGCGATGATGTCATATGCCAAGTANTATGAAGgaagattttaaaaacttt
tatggCGATGATGTCATATGCCAAGTACATCAGATTATCATAAAATTAAC
GTTCCTGTGACACCATAATGTGAATCAGCAGATTGAAGATTCAAATCGAG
TTTCAGTTGTCAAGTCATGAAGTAATAGATTACGATGACGATTGCATAGA
GTATGTTTGATCCACGCAAGGACTCATGTTGGTTTGGCCTAAAGAGGTAA
AAGAAGATCTCCTTTTTATCTTATTAAAGTAGCTTTCACATGAGGGACAA
GTAAAGATTCCCTCATTTTTGATAATATGAATCTTCTTTATATTGAAAAT
GCGATTATTAGATTCAAACCATTTATGAAAGTAATAATGCGGCTTTGTCT
AACTTAGTAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCAATCATTCCATCCATATATTCAGCTGAGAC
ATACGTAATATTAGGTAAGAACTTGTTTATTTACATCCACCAGAACTCCC
TATAAAATACATTTCTGTCAGTGATGAATTGTCTTAAATGTATTTCTAAA
ATCATCTTAAACAAATTTGCCTCTTGCAAATCATATCTAATGTAAAGTTA
CCAAACTGTAAGGGATTGATTAATCATATTCCCAAACCTGTTCTATGTTT
TGTTCAGAGCTTTGTATACGATGCCACATAGGGTAaatatcaattttcaa
ttatttcatGGCTTTGTTTCAAAATAAACTTCTGAAGGAGGTATAAATTA
ATTGCTGAAAGGGCAATCATAGATCGATTTAgagggaaaatttttatttt
catcgtTTTTATGGCAAACTCATCTTGTTCCGaagatttctttgaaaaat
tgatggttttttttagcagatttctttcaaacaaagATGGTACAGCCATT
ATAACACCTTCAACTATGAATGCAAAAGGGNCGTTTTTTTTTAgtagatt
tctttcaaacaaagATGGTACAGCCATAATAACACCTTCAACTATGAATG
CAAAAGGGCATCAACAGAGTTATCCAACCACGTTTGGGACCTGCAAATCA
AAAACATACAACCAAAATTATCATGGGAGATTATCGACCACGCCCGCTCG
TATTTTAAAGGCTTGGTAAACTGCAACATCTGTCTCACAGAAAAATTTCA
CTTAATTACATCAGAGCTTCATCTCGTAAACAAAAGATCAGAACTTATTT
CCACATGTCGCCATAACAACAGATTTAATCTGAAGAACTTCAAATTGGTC
CCCCCCCCGGATGAAtcatgaattttattttcaatatgttttaataattg
tttttattacagTTTTATTGCACAAATTATCCAGTTTTTCACATTCAAGG
AATGCTTGAAAGGGATTAGttcgtcaaaaaaaaggttggtATCATAGCTT
TGAATGGGCTTTGAAtagttttgattgttttaagttgtatatttattttt
agtatATTTGTTTTATATCAACAAACATATCAATCAAAAATATACACAAT
ATGGTTGGTTTGATGGGTTTGATTCCTACTAGCATGTTCGTCTTCACCAA
AAATATTGTCAAGCAGTCTGGATTAAGAGCACCATGAACGCTTGCGCAGA
GTCAACCCAGCGCTGCCCAAGAGAGCTGGATGAATTGGCAGATCGCAGTC
AAGTATTCAAACCTTCCAATGTCAACAACAGACCCTGCCACCCTTTCAAA
ATCATACCAGCCGTCCAAAGAACAACAAACACTATCTTTAACTTATCAAT
GATTTTCAGAATCCAGATGGCACATGTAAGGATAGACCAGGAAAATCGCA
GCATGGACATAAGATGAAAGGTTATGCTGAACTTGACAACACAGGATtat
aaaattttggaaatacatatttctaaattttaatagTCCCTTTTCTGAAA
GTGAAAGAAATGACTTGGGAggtaatttattcaaaaaaacaaacaatgca
TCTGTCTCCTATTAGGAATGCATTAGTCGACAAGAGGTGACCAAGCAAAG
GCCTGGTAATATGATGTTGTTTTCGCCTAAAAAACCACATAACAAAAATC
ATGGCCTTTGATAAAAGTTACAAAATAGACATACAAATAGCATTTCATAT
TCTGACCACAAGATGTGTTtcacaaaagtttcaaaactttgatgATGTGA
TCAAAAAtgaacaagacgacttaaagtcgaaaatttcgcataatacttga
acatcaacgacgaagacgcgtgaaacgtgactcctgcagcattatgcatt
ttgaatgaagcgttacacaaaatatacacaatgcattgtacacacaggtc
atagataccctgtttttttaatgaaaaatctcaatccattaaaaaaaaga
ttcctttaAAAATGCGACTTAAGAATTCTattctataaagcgtaaacaaa
atctttcaattcagaataattcagagaactgcaatatacttgagaaaaat
aatttaaaatttttttgaaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016055XLOC_016055Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028334-exon-sc0000674-1491911889:161060..161099TCONS_00028334-exon-sc0000674-1491911889:161060..161099Clytia hemisphaericaexon
TCONS_00028334-exon-sc0000674-1510915933:161060..161099TCONS_00028334-exon-sc0000674-1510915933:161060..161099Clytia hemisphaericaexon
TCONS_00028334-exon-sc0000674-1575043694:161060..161099TCONS_00028334-exon-sc0000674-1575043694:161060..161099Clytia hemisphaericaexon
TCONS_00028334-exon-sc0000674-1491911889:164904..166431TCONS_00028334-exon-sc0000674-1491911889:164904..166431Clytia hemisphaericaexon
TCONS_00028334-exon-sc0000674-1510915933:164904..166431TCONS_00028334-exon-sc0000674-1510915933:164904..166431Clytia hemisphaericaexon
TCONS_00028334-exon-sc0000674-1575043694:164904..166431TCONS_00028334-exon-sc0000674-1575043694:164904..166431Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000674supercontigsc0000674:161060..166431 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0339976	8.50996e-10	0.0284638	0.0523802	0.0993741	0.576292	0.157913	1.37958	0	0	0.00032167	0	0	0.0589554	0	0	0.0143188	0.034129	0.0895414	0	0.0303974	0.00545571	0	1.02518	1.86555	0.0304561	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028334 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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