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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028342 ID=TCONS_00028342|Name=TCONS_00028342|organism=Clytia hemisphaerica|type=transcript|length=1852bp
CTTCAATAAAGCATTCTTATAGCAAGCCTTGGACGGAAAGTATTGACGCG
TTCACTATACATTGATTTAACAGCATTATCAACATATTAACCAAGGCTCA
GCTAATGCTCTTACCGAATGGCAGTCTTCAAATACATTTAATATAACATC
CGCTATTCGTCCAAAACAGAAATGTAAGTTAAACATTTGGAACATAGATT
TGATTGTGTCCTGATGAGAAGGGGAGCactcaattaaaaaaaacgacCTT
GCGTGCGGCCCAAAACaatgcctttgaaatcggacccttacagtgcaaaa
aaaattagccaattttgaaaaacatacggTGCATTTTGACCAGATTTTCC
ATACTTTACACCCTCAGAGTGCACTTTGCTCATTTCTATCCTTAGTGGCT
GTCCACTAGTACGCACGCACTAAAATGCCGAAAATCGAGTAGCCCTCCCC
ATGTACGCACACGTACGCAAATAGCTATACCCTCTGGTAAGTACGTACGT
ACGTACAAGCAAAACAGGGCtatgaaaaacttttctttgcgtacgtacat
tttcctttgacccctcccctcccactgtacgcaagcatacgcttttgaga
acaCCCCtacccccttagtgcgtacgtactatgtggacgacCCCTTACAG
TGctctttgggaagcttggaaaaaggacTCTTAAGGGCAGCGCACAGTAG
ATCATTTACGAGGCCCTCTCCCATGTCTGAGATACACCAGGTGAATAGAA
TTTAGTGATCGACGTATTATCCTTTTCGTTATTACTTTAGTTATTACTTT
TACCAGATGTGTCGCTTAAGTATTTCGCGACTACACGATGAAGGAAATTC
TAAGAGCTgattagtagggggccaagcctagggttccgtgacatcttttc
tacgacctaaccatttttagtccatcCGAAAGAACAGTATACTATGAGAT
ATTTCTgggagggaggacgcggattaggcccgggaaaacttttgtgatca
aaatagtgacgccataggcaaagctgcaagggaaaataagggatagagaa
atagcttattttcaaaagtcaaaataaacgaagatgattggtaccatctg
aaaaagcatgaaattctgagcaaaaaagtgtattataaCAGTTGAAGTTG
AAGTtaaaaaacataccgacgtcagtacgatcaagacacgatttgacgtc
aaatcacagtagagcgctgacagttagttggtcttaaaccggctgtattt
ctttgtgtgttttagatGGGAATGAGAGAGATGAACCATGCCATCAGGGG
AACTGGCCTAgaaaataatctgaaaatattaGAATATTCTAGGAAATCAC
TACGCTAAAAATGTTGGTAAATAAAATAGTAGCtaagaatttcaattcca
aataATTAAACATATCATACACCAATTACACCATTTAGTACACCATTCTA
GACAATTCTGTTCAGTGCCATATCATACCAATCAACAATATCAACATTAA
CTTTTCTTAAAGCTTTATAAATGTCTCGTCTATATGTAAATTCAAGGGCT
CCTTTTGGACGACGATTATTAACCCAAGACGAGAGAAGCTCGCGATTTTt
gaggacaattttttttctggccaaaaatgccggatcTATGtcagaaatcg
ccgtttttgcaggactttttttaatattctttgttggttttttcactcaa
aaacattTATAACAATGCCCACTGGCCCgcacttttcaaaatttatttaa
tttatcattttataggaaacaattttttgtaagaactaagtaGCAAAAAC
Ctctgtatcttttgaaaaattgaatattttccaagaattttttcagatga
ta Run BLAST on NCBI transcript from alignment at sc0000674:117677..119528- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028342 ID=TCONS_00028342|Name=TCONS_00028342|organism=Clytia hemisphaerica|type=transcript|length=1852bp|location=Sequence derived from alignment at sc0000674:117677..119528- (Clytia hemisphaerica)
CTTCAATAAAGCATTCTTATAGCAAGCCTTGGACGGAAAGTATTGACGCG
TTCACTATACATTGATTTAACAGCATTATCAACATATTAACCAAGGCTCA
GCTAATGCTCTTACCGAATGGCAGTCTTCAAATACATTTAATATAACATC
CGCTATTCGTCCAAAACAGAAATGTAAGTTAAACATTTGGAACATAGATT
TGATTGTGTCCTGATGAGAAGGGGAGCACTCAATTAAAAAAAACGACCTT
GCGTGCGGCCCAAAACAATGCCTTTGAAATCGGACCCTTACAGTGCAAAA
AAAATTAGCCAATTTTGAAAAACATACGGTGCATTTTGACCAGATTTTCC
ATACTTTACACCCTCAGAGTGCACTTTGCTCATTTCTATCCTTAGTGGCT
GTCCACTAGTACGCACGCACTAAAATGCCGAAAATCGAGTAGCCCTCCCC
ATGTACGCACACGTACGCAAATAGCTATACCCTCTGGTAAGTACGTACGT
ACGTACAAGCAAAACAGGGCTATGAAAAACTTTTCTTTGCGTACGTACAT
TTTCCTTTGACCCCTCCCCTCCCACTGTACGCAAGCATACGCTTTTGAGA
ACACCCCTACCCCCTTAGTGCGTACGTACTATGTGGACGACCCCTTACAG
TGCTCTTTGGGAAGCTTGGAAAAAGGACTCTTAAGGGCAGCGCACAGTAG
ATCATTTACGAGGCCCTCTCCCATGTCTGAGATACACCAGGTGAATAGAA
TTTAGTGATCGACGTATTATCCTTTTCGTTATTACTTTAGTTATTACTTT
TACCAGATGTGTCGCTTAAGTATTTCGCGACTACACGATGAAGGAAATTC
TAAGAGCTGATTAGTAGGGGGCCAAGCCTAGGGTTCCGTGACATCTTTTC
TACGACCTAACCATTTTTAGTCCATCCGAAAGAACAGTATACTATGAGAT
ATTTCTGGGAGGGAGGACGCGGATTAGGCCCGGGAAAACTTTTGTGATCA
AAATAGTGACGCCATAGGCAAAGCTGCAAGGGAAAATAAGGGATAGAGAA
ATAGCTTATTTTCAAAAGTCAAAATAAACGAAGATGATTGGTACCATCTG
AAAAAGCATGAAATTCTGAGCAAAAAAGTGTATTATAACAGTTGAAGTTG
AAGTTAAAAAACATACCGACGTCAGTACGATCAAGACACGATTTGACGTC
AAATCACAGTAGAGCGCTGACAGTTAGTTGGTCTTAAACCGGCTGTATTT
CTTTGTGTGTTTTAGATGGGAATGAGAGAGATGAACCATGCCATCAGGGG
AACTGGCCTAGAAAATAATCTGAAAATATTAGAATATTCTAGGAAATCAC
TACGCTAAAAATGTTGGTAAATAAAATAGTAGCTAAGAATTTCAATTCCA
AATAATTAAACATATCATACACCAATTACACCATTTAGTACACCATTCTA
GACAATTCTGTTCAGTGCCATATCATACCAATCAACAATATCAACATTAA
CTTTTCTTAAAGCTTTATAAATGTCTCGTCTATATGTAAATTCAAGGGCT
CCTTTTGGACGACGATTATTAACCCAAGACGAGAGAAGCTCGCGATTTTT
GAGGACAATTTTTTTTCTGGCCAAAAATGCCGGATCTATGTCAGAAATCG
CCGTTTTTGCAGGACTTTTTTTAATATTCTTTGTTGGTTTTTTCACTCAA
AAACATTTATAACAATGCCCACTGGCCCGCACTTTTCAAAATTTATTTAA
TTTATCATTTTATAGGAAACAATTTTTTGTAAGAACTAAGTAGCAAAAAC
CTCTGTATCTTTTGAAAAATTGAATATTTTCCAAGAATTTTTTCAGATGA
TA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028342-exon-sc0000674-1575043694:117677..119528 | TCONS_00028342-exon-sc0000674-1575043694:117677..119528 | Clytia hemisphaerica | exon |
| TCONS_00028342-exon-sc0000674-1510915933:117677..119528 | TCONS_00028342-exon-sc0000674-1510915933:117677..119528 | Clytia hemisphaerica | exon |
| TCONS_00028342-exon-sc0000674-1491911889:117677..119528 | TCONS_00028342-exon-sc0000674-1491911889:117677..119528 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000674 | supercontig | sc0000674:117677..119528 - |
Blast
The following BLAST results are available for this feature:
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