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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028344 ID=TCONS_00028344|Name=TCONS_00028344|organism=Clytia hemisphaerica|type=transcript|length=1364bp
gttttcaaaaaaattttaaattatttttctcaagtatattgcagttctct
gaattattctgaattgaaagattttgtttacgctttatagaatAGAATTC
TTAAGTCGCATTTTtaaaggaatcttttttttaatggattgagatttttc
attaaaaaaacagggtatctatgacctgtgtgtacaatgcattgtgtata
ttttgtgtaacgcttcattcaaaatgcataatgctgcaggagtcacgttt
cacgcgtcttcgtcgttgatgttcaagtattatgcgaaattttcgacttt
aagtcgtcttgttcaTTTTTGATCACATcatcaaagttttgaaacttttg
tgaAACACATCTTGTGGTCAGAATATGAAATGCTATTTGTATGTCTATTT
TGTAACTTTTATCAAAGGCCATGATTTTTGTTATGTGGTTTTTTAGGCGA
AAACAACATCATATTACCAGGCCTTTGCTTGGTCACCTCTTGTCGACTAA
TGCATTCCTAATAGGAGACAGAtgcattgtttgtttttttgaataaatta
ccTCCCAAGTCATTTCTTTCACTTTCAGAAAAGGGActattaaaatttag
aaatatgtatttccaaaattttataATCCTGTGTTGTCAAGTTCAGCATA
ACCTTTCATCTTATGTCCATGCTGCGATTTTCCTGGTCTATCCTTACATG
TGCCATCTGGATTCTGAAAATCATTGATAAGTTAAAGATAGTGTTTGTTG
TTCTTTGGACGGCTGGTATGATTTTGAAAGGGTGGCAGGGTCTGTTGTTG
ACATTGGAAGGTTTGAATACTTGACTGCGATCTGCCAATTCATCCAGCTC
TCTTGGGCAGCGCTGGGTTGACTCTGCGCAAGCGTTCATGGTGCTCTTAA
TCCAGACTGCTTGACAATATTTTTGGTGAAGACGAACATGCTAGTAGGAA
TCAAACCCATCAAACCAACCATATTGTGTATATTTTTGATTGATATGTTT
GTTGATATAAAACAAATatactaaaaataaatatacaacttaaaacaatc
aaaactaTTCAAAGCCCATTCAAAGCTATGATaccaaccttttttttgac
gaaCTAATCCCTTTCAAGCATTCCTTGAATGTGAAAAACTGGATAATTTG
TGCAATAAAActgtaataaaaacaattattaaaacatattgaaaataaaa
ttcatgaTTCATCCGGGGGGGGGACCAATTTGAAGTTCTTCAGATTAAAT
CTGTTGTTATGGCGACATGTGGAAATAAGTTCTGATCTTTTGTTTACGAG
ATGAAGCTCTGATGTAATTAAGTGAAATTTTTCTGTGAGACAGATGTTGC
AGTTTATCAAGCCG Run BLAST on NCBI transcript from alignment at sc0000674:161766..166431- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028344 ID=TCONS_00028344|Name=TCONS_00028344|organism=Clytia hemisphaerica|type=transcript|length=4666bp|location=Sequence derived from alignment at sc0000674:161766..166431- (Clytia hemisphaerica)
GTTTTCAAAAAAATTTTAAATTATTTTTCTCAAGTATATTGCAGTTCTCT
GAATTATTCTGAATTGAAAGATTTTGTTTACGCTTTATAGAATAGAATTC
TTAAGTCGCATTTTTAAAGGAATCTTTTTTTTAATGGATTGAGATTTTTC
ATTAAAAAAACAGGGTATCTATGACCTGTGTGTACAATGCATTGTGTATA
TTTTGTGTAACGCTTCATTCAAAATGCATAATGCTGCAGGAGTCACGTTT
CACGCGTCTTCGTCGTTGATGTTCAAGTATTATGCGAAATTTTCGACTTT
AAGTCGTCTTGTTCATTTTTGATCACATCATCAAAGTTTTGAAACTTTTG
TGAAACACATCTTGTGGTCAGAATATGAAATGCTATTTGTATGTCTATTT
TGTAACTTTTATCAAAGGCCATGATTTTTGTTATGTGGTTTTTTAGGCGA
AAACAACATCATATTACCAGGCCTTTGCTTGGTCACCTCTTGTCGACTAA
TGCATTCCTAATAGGAGACAGATGCATTGTTTGTTTTTTTGAATAAATTA
CCTCCCAAGTCATTTCTTTCACTTTCAGAAAAGGGACTATTAAAATTTAG
AAATATGTATTTCCAAAATTTTATAATCCTGTGTTGTCAAGTTCAGCATA
ACCTTTCATCTTATGTCCATGCTGCGATTTTCCTGGTCTATCCTTACATG
TGCCATCTGGATTCTGAAAATCATTGATAAGTTAAAGATAGTGTTTGTTG
TTCTTTGGACGGCTGGTATGATTTTGAAAGGGTGGCAGGGTCTGTTGTTG
ACATTGGAAGGTTTGAATACTTGACTGCGATCTGCCAATTCATCCAGCTC
TCTTGGGCAGCGCTGGGTTGACTCTGCGCAAGCGTTCATGGTGCTCTTAA
TCCAGACTGCTTGACAATATTTTTGGTGAAGACGAACATGCTAGTAGGAA
TCAAACCCATCAAACCAACCATATTGTGTATATTTTTGATTGATATGTTT
GTTGATATAAAACAAATATACTAAAAATAAATATACAACTTAAAACAATC
AAAACTATTCAAAGCCCATTCAAAGCTATGATACCAACCTTTTTTTTGAC
GAACTAATCCCTTTCAAGCATTCCTTGAATGTGAAAAACTGGATAATTTG
TGCAATAAAACTGTAATAAAAACAATTATTAAAACATATTGAAAATAAAA
TTCATGATTCATCCGGGGGGGGGACCAATTTGAAGTTCTTCAGATTAAAT
CTGTTGTTATGGCGACATGTGGAAATAAGTTCTGATCTTTTGTTTACGAG
ATGAAGCTCTGATGTAATTAAGTGAAATTTTTCTGTGAGACAGATGTTGC
AGTTTACCAAGCCTTTAAAATACGAGCGGGCGTGGTCGATAATCTCCCAT
GATAATTTTGGTTGTATGTTTTTGATTTGCAGGTCCCAAACGTGGTTGGA
TAACTCTGTTGATGCCCTTTTGCATTCATAGTTGAAGGTGTTATTATGGC
TGTACCATCTTTGTTTGAAAGAAATCTACTAAAAAAAAACGNCCCTTTTG
CATTCATAGTTGAAGGTGTTATAATGGCTGTACCATCTTTGTTTGAAAGA
AATCTGCTAAAAAAAACCATCAATTTTTCAAAGAAATCTTCGGAACAAGA
TGAGTTTGCCATAAAAACGATGAAAATAAAAATTTTCCCTCTAAATCGAT
CTATGATTGCCCTTTCAGCAATTAATTTATACCTCCTTCAGAAGTTTATT
TTGAAACAAAGCCATGAAATAATTGAAAATTGATATTTACCCTATGTGGC
ATCGTATACAAAGCTCTGAACAAAACATAGAACAGGTTTGGGAATATGAT
TAATCAATCCCTTACAGTTTGGTAACTTTACATTAGATATGATTTGCAAG
AGGCAAATTTGTTTAAGATGATTTTAGAAATACATTTAAGACAATTCATC
ACTGACAGAAATGTATTTTATAGGGAGTTCTGGTGGATGTAAATAAACAA
GTTCTTACCTAATATTACGTATGTCTCAGCTGAATATATGGATGGAATGA
TTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNATTACTAAGTTAGACAAAGCCGCATTATTACTTTCATAA
ATGGTTTGAATCTAATAATCGCATTTTCAATATAAAGAAGATTCATATTA
TCAAAAATGAGGGAATCTTTACTTGTCCCTCATGTGAAAGCTACTTTAAT
AAGATAAAAAGGAGATCTTCTTTTACCTCTTTAGGCCAAACCAACATGAG
TCCTTGCGTGGATCAAACATACTCTATGCAATCGTCATCGTAATCTATTA
CTTCATGACTTGACAACTGAAACTCGATTTGAATCTTCAATCTGCTGATT
CACATTATGGTGTCACAGGAACGTTAATTTTATGATAATCTGATGTACTT
GGCATATGACATCATCGCCATAAAAGTTTTTAAAATCTTCCTTCATANTA
CTTGGCATATGACATCATCGCCATAAAAGTTTTTACATCTTCCTTCATTA
ATGATTTTAGTGATTGAGTTGTCTCCAGGCTTCAAAAAATTTGCAATAAA
TTGTTTAAAGTAATCCAGTAAGATTCACTGACACCTATTAAAAAATAAAG
TGATAAAAAAATCAAAGCAATGAACAGGGGTATTCTGGTGCTTATTTGAT
CTATTATACCTAAAGAAAAAATTAAAAAAAAATTAGTTACTATAAGTATC
CACCTCCAGGCTTTTTAAAGGCCAACAAAAATTGTCAACTTGACCACAAT
ATGCGGATGGCAATCTTTGTGTCTTTTCGCTGTTTCCTTTTTCCTCTGGT
GTTTTTTCTTTTGCATTGTTGTGAATACAAGCTCAAAATATTTTCCCGTC
ATTGGCTCTGTTCATTCTGAAAGCATGTAAACACAATATTCACTGCTATG
CTCGGTCTAGGCAAATGAATGCCAGGGTTTCACTTTTTAAAAAATGGAGC
ATGTTGAGTGAATTGTCGTGAATACAAGTTCAAAATATTTACTCGTCATT
GGCTCTGTTCATTCTGAAAGCATGTAAACACAATATTCAATGCTATGCTC
GGTCTACGCAAATGAATGCCGGGGTTTCACTTTTTATTTAAAAAAATGGA
GCATGTTGAGTGAATTGTCGTGAATACAAGTTCAAAATATTTACCCGTCA
TTGGCTCTGTTCATTCTGAAAACATGTAAACACAATATTCACTGCTATTC
TCGGTCTAAGCAAATGAATGCCAGGGTTTCACTTTTTAAAAAATGGAGCA
TGTTGAGTGAATTGTCGTGAATACAAGTTCAAAATATTTACAAGTCATTG
GCTCTGTTCATTCTGAAAGCATGTAAACACAATATTCACTGCTATGCTCG
GTCTAAGCAAAAGAATGCCAGGGTTTCAATTTTTTAAAAAATGGAGCATG
TTGAGTGAATTGTCGTGAATACAAGTTCAAAATATTTACCCGTCATTGGC
TCTGTTCATTCTGAAAGCATGTAAACACAATATTCAATGCTATGCTCGGT
CTAAGCAAATGAATGCCAGTGTTTCAATTTTTATTTAAAAAAATTGGAGC
ATGTTGAGTGAATTGTCGTGAACACAAGTTCAAAATATTTACCCGTCATT
GGCTCTGTTCATTCTGAAAGCATGTAACACAATATTCAATGCTATGCTCG
GTCTAAGCAAATGAATGCCAGGGTTTCACTTTTTAAAAAATGGAGCATGT
TGAGTGAATTGTCGTGNGACATGTGGAAATAAATTCTGATCTTTTGTACG
AGATGAAGCTCTGATGTAATTAAGTGAAATTTTTCTGTGAGACAGAGGTT
GCAGTTTATCAAGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028344-exon-sc0000674-1575043694:165087..166431 | TCONS_00028344-exon-sc0000674-1575043694:165087..166431 | Clytia hemisphaerica | exon |
| TCONS_00028344-exon-sc0000674-1575043694:161766..161784 | TCONS_00028344-exon-sc0000674-1575043694:161766..161784 | Clytia hemisphaerica | exon |
| TCONS_00028344-exon-sc0000674-1510915933:165087..166431 | TCONS_00028344-exon-sc0000674-1510915933:165087..166431 | Clytia hemisphaerica | exon |
| TCONS_00028344-exon-sc0000674-1510915933:161766..161784 | TCONS_00028344-exon-sc0000674-1510915933:161766..161784 | Clytia hemisphaerica | exon |
| TCONS_00028344-exon-sc0000674-1491911889:165087..166431 | TCONS_00028344-exon-sc0000674-1491911889:165087..166431 | Clytia hemisphaerica | exon |
| TCONS_00028344-exon-sc0000674-1491911889:161766..161784 | TCONS_00028344-exon-sc0000674-1491911889:161766..161784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000674 | supercontig | sc0000674:161766..166431 - |
Blast
The following BLAST results are available for this feature:
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