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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028356 ID=TCONS_00028356|Name=TCONS_00028356|organism=Clytia hemisphaerica|type=transcript|length=2810bp
CAAGTCACCAGGACGTAAATTTATTCTTCACTTGCGTCCCCATGGCGATG
AACAAACAAAACAACGAAAGATGCTGCCCCTAAAGCGAGAAAATACTGCT
GTCCCTGCTGGNATATCCCTGGGGACAAGTCACCAGGACGTAAATTTATT
CTTCACTTGCGTCCCCATGGCGATGAACAAACAAAACAACGAAAGATGCT
GCCCCTAAAGCGAGAAAATACTGCTGTCCCTGCTGGTGATGATCTTTTTG
CATCACGGTTTGGTAAGGAGGATGAGGATGCTGCCGAGTCTACGTGGAGT
GCCTGGAGAATGGGACGGGAAGCAGATACTGTGGACACCACCAAGAGGGT
AAAGGATGCTGAGTCAGCATGGAGTGTTTGGAGGATGGGACGGGAAACGG
ATGGCACTACCACTGTAAAGGACGCCACCACGAGGGAGCGAGATGCCTCT
ATCCCCAGTCATCCAAAATATCGAGTGTTTAGGTCAGGTCGAGAAGCCGA
AAAGTCGCTTCCAATGTCAAGAGCATTTGGTGGAAAAAGGGATTCACCCG
GCGATGCTCCTATTCCTTNCAAGTCACCAGGACGTAAATTTATTCTTCAC
TTGCGTCCCCATGGCGATGAACAAACAAAACAACGAAAGATGCTGCCCCT
AAAGCGAGAAGATACTGCTGTNCCCATCAAACTCATATCCCTGGGGACAA
GTCACCAGGACGTAAATTTATTCTTCACTTGCGTCCCCATGGCGATGAAC
AAACAAAACAACGAAAGATGCTGCCCCTAAAGCGAGAAAATACTGCTGTC
CCTGCTGGTGATGATCTTTTTGCATCACGGTTTGGTAAGGAGGATGAGGA
TGCTGCCGAGTCTACGTGGAGTGCCTGGAGAATGGGACGGGAAGCAGATA
CTGTGGACACCACCAAGAGGGTAAAGGATGCTGAGTCAGCATGGAGTGTT
TGGAGGATGGGACGGGAAACGGATGGCACTACCACTGTAAAGGACGCCAC
CACGAGGGAGCGAGATGCCTCTATCCCCAGCCATCCAAGATATCAAGTAT
TTAGGTCAGGTCGAGAAGCCGAAAAGTCGCTTCCAATGTCAAGAGCATTT
GGTGGAAAAAGGGATTCACCCGGCGATGCTCCTATTCCTTATTATTACTC
ATTCAACAACGAAGGAAAAGATTTTTCGTGGAACATCTTTGGTAGAAAGA
GAGCAGCTGAGTCCGATCTTCCAATGTCCAGATTTGTCGATGGTCGAAAG
AGGGATTTACCCATGGGAAGAACGTTTTCCAAACGGAAATCCAACCGCAT
GTTTTCTCGTGCCGACGTTCCGTTTTTCGTCAAGCGAGGTTCAAACCTAC
CTATGAACAGAATGTTTTCTCGAAGTGCTGTTCCATACTTTGGAGAAGGA
AAGAGAGAATCGAATCATTTGCCAATGGGTATCTTTTCAAGAGAAAAAAC
CAACGCTGATGTTCCGTTTTACGTAAAACGTGCTTCAAGCCTTCCTATCG
GTCATATGTTCTCCAAAAGAGCAAATTCCCTCAACAATCGCCTACCAATG
CAACTTGGATTTAAACGAGCCTCAAATCTACCAATGACCAGAATGTTTTC
CAAGAGGGCGAGTCTACCAATGCTACTTGGAGTAGTCAAAAAGGAGCATG
GTGGATTTCCGCGAGCACCTGAATACAACTGGGGTCCAGCTTCCTTGAAA
TATCACCGCCGTAGCTTCCTTCCAATGATAATGCACGAAAGAAAAAGACG
CTTCAATGGATTCAGACCAGTCGTGAGTGGAATTATCATTAATGACCAAA
ACCgtaaattgaaaaacaatttcaatgactTTCATGTTAAAAAACTTTGA
GTATAATCCCATAGGAAGCCTTTGGATGGTACACTGATTTCATGATCAGA
ATAAATATAATGGAAACTTTAgatgttatgatttttattATTTCCGAGTT
AGAGTTTATTACGATGTTGGAGGAACTGCGTCAATGCGCTACATAAACAT
AGACCGTGGAGGCCAACCTCGTACCCAGGGCGATAAGCTTTCTGATATTA
GATAGGACGCTTANCATAGACCGTGGAGGCCAACCTCGTACCCAGGGCGA
TAAGCTTTCTGATATTAGATAGGACGCTTAGTAACAGTGAGCTTCCTATT
TGCCTCTCATCTAGACTAGCAACTATATTTTCCCGCGCGGCCGCTGACTG
TTCGCCATGGAATCGAGGTTGCGTGGAGGCAGTTTCTCAATCACGgcaaa
gcaaaatattttgattgcagtttttttgaaagtggtacccggaACGAAAG
CGCTATATCTACTTGTCATTAGGCAAAGTTTTGACACTACAATGACTTTT
GTGTGGTTACCGCTTTCAAAAAAACTGGATATAGCTTGTTCCAAGGTCTA
TTAGAGGTCAATCGCTACATAATACCAATCACAttccaacctcgttccct
gtgtattatcagctttttgatgcctactgatagcgctagataatattctc
AGGCGTTCATAGGTAatataaataaagcctggggtACACATGGACGAGGT
TGAGTTCTATTAAGTTCTAAATCAAGCCTCGTGTTctcaaattattctta
taataGAACAAGCTAAAAAAATCGTGTTATAGGATTGAAAAATGACGAAT
CTCAAATATTTGTTATCGtaacattttcatatttttcgcatgaaattttc
ggttttctcatttttagttATCATCTTTGTATGTGTGACAAATTATAGTC
CgtataaatattttcttaataAAGGGGTAATGAAttaaagaaatatattt
tatgtttatg Run BLAST on NCBI transcript from alignment at sc0000675:1..2810+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028356 ID=TCONS_00028356|Name=TCONS_00028356|organism=Clytia hemisphaerica|type=transcript|length=2810bp|location=Sequence derived from alignment at sc0000675:1..2810+ (Clytia hemisphaerica)
CAAGTCACCAGGACGTAAATTTATTCTTCACTTGCGTCCCCATGGCGATG
AACAAACAAAACAACGAAAGATGCTGCCCCTAAAGCGAGAAAATACTGCT
GTCCCTGCTGGNATATCCCTGGGGACAAGTCACCAGGACGTAAATTTATT
CTTCACTTGCGTCCCCATGGCGATGAACAAACAAAACAACGAAAGATGCT
GCCCCTAAAGCGAGAAAATACTGCTGTCCCTGCTGGTGATGATCTTTTTG
CATCACGGTTTGGTAAGGAGGATGAGGATGCTGCCGAGTCTACGTGGAGT
GCCTGGAGAATGGGACGGGAAGCAGATACTGTGGACACCACCAAGAGGGT
AAAGGATGCTGAGTCAGCATGGAGTGTTTGGAGGATGGGACGGGAAACGG
ATGGCACTACCACTGTAAAGGACGCCACCACGAGGGAGCGAGATGCCTCT
ATCCCCAGTCATCCAAAATATCGAGTGTTTAGGTCAGGTCGAGAAGCCGA
AAAGTCGCTTCCAATGTCAAGAGCATTTGGTGGAAAAAGGGATTCACCCG
GCGATGCTCCTATTCCTTNCAAGTCACCAGGACGTAAATTTATTCTTCAC
TTGCGTCCCCATGGCGATGAACAAACAAAACAACGAAAGATGCTGCCCCT
AAAGCGAGAAGATACTGCTGTNCCCATCAAACTCATATCCCTGGGGACAA
GTCACCAGGACGTAAATTTATTCTTCACTTGCGTCCCCATGGCGATGAAC
AAACAAAACAACGAAAGATGCTGCCCCTAAAGCGAGAAAATACTGCTGTC
CCTGCTGGTGATGATCTTTTTGCATCACGGTTTGGTAAGGAGGATGAGGA
TGCTGCCGAGTCTACGTGGAGTGCCTGGAGAATGGGACGGGAAGCAGATA
CTGTGGACACCACCAAGAGGGTAAAGGATGCTGAGTCAGCATGGAGTGTT
TGGAGGATGGGACGGGAAACGGATGGCACTACCACTGTAAAGGACGCCAC
CACGAGGGAGCGAGATGCCTCTATCCCCAGCCATCCAAGATATCAAGTAT
TTAGGTCAGGTCGAGAAGCCGAAAAGTCGCTTCCAATGTCAAGAGCATTT
GGTGGAAAAAGGGATTCACCCGGCGATGCTCCTATTCCTTATTATTACTC
ATTCAACAACGAAGGAAAAGATTTTTCGTGGAACATCTTTGGTAGAAAGA
GAGCAGCTGAGTCCGATCTTCCAATGTCCAGATTTGTCGATGGTCGAAAG
AGGGATTTACCCATGGGAAGAACGTTTTCCAAACGGAAATCCAACCGCAT
GTTTTCTCGTGCCGACGTTCCGTTTTTCGTCAAGCGAGGTTCAAACCTAC
CTATGAACAGAATGTTTTCTCGAAGTGCTGTTCCATACTTTGGAGAAGGA
AAGAGAGAATCGAATCATTTGCCAATGGGTATCTTTTCAAGAGAAAAAAC
CAACGCTGATGTTCCGTTTTACGTAAAACGTGCTTCAAGCCTTCCTATCG
GTCATATGTTCTCCAAAAGAGCAAATTCCCTCAACAATCGCCTACCAATG
CAACTTGGATTTAAACGAGCCTCAAATCTACCAATGACCAGAATGTTTTC
CAAGAGGGCGAGTCTACCAATGCTACTTGGAGTAGTCAAAAAGGAGCATG
GTGGATTTCCGCGAGCACCTGAATACAACTGGGGTCCAGCTTCCTTGAAA
TATCACCGCCGTAGCTTCCTTCCAATGATAATGCACGAAAGAAAAAGACG
CTTCAATGGATTCAGACCAGTCGTGAGTGGAATTATCATTAATGACCAAA
ACCgtaaattgaaaaacaatttcaatgactTTCATGTTAAAAAACTTTGA
GTATAATCCCATAGGAAGCCTTTGGATGGTACACTGATTTCATGATCAGA
ATAAATATAATGGAAACTTTAgatgttatgatttttattATTTCCGAGTT
AGAGTTTATTACGATGTTGGAGGAACTGCGTCAATGCGCTACATAAACAT
AGACCGTGGAGGCCAACCTCGTACCCAGGGCGATAAGCTTTCTGATATTA
GATAGGACGCTTANCATAGACCGTGGAGGCCAACCTCGTACCCAGGGCGA
TAAGCTTTCTGATATTAGATAGGACGCTTAGTAACAGTGAGCTTCCTATT
TGCCTCTCATCTAGACTAGCAACTATATTTTCCCGCGCGGCCGCTGACTG
TTCGCCATGGAATCGAGGTTGCGTGGAGGCAGTTTCTCAATCACGgcaaa
gcaaaatattttgattgcagtttttttgaaagtggtacccggaACGAAAG
CGCTATATCTACTTGTCATTAGGCAAAGTTTTGACACTACAATGACTTTT
GTGTGGTTACCGCTTTCAAAAAAACTGGATATAGCTTGTTCCAAGGTCTA
TTAGAGGTCAATCGCTACATAATACCAATCACAttccaacctcgttccct
gtgtattatcagctttttgatgcctactgatagcgctagataatattctc
AGGCGTTCATAGGTAatataaataaagcctggggtACACATGGACGAGGT
TGAGTTCTATTAAGTTCTAAATCAAGCCTCGTGTTctcaaattattctta
taataGAACAAGCTAAAAAAATCGTGTTATAGGATTGAAAAATGACGAAT
CTCAAATATTTGTTATCGtaacattttcatatttttcgcatgaaattttc
ggttttctcatttttagttATCATCTTTGTATGTGTGACAAATTATAGTC
CgtataaatattttcttaataAAGGGGTAATGAAttaaagaaatatattt
tatgtttatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028356-exon-sc0000675-1491911889:1..2810 | TCONS_00028356-exon-sc0000675-1491911889:1..2810 | Clytia hemisphaerica | exon |
| TCONS_00028356-exon-sc0000675-1510915933:1..2810 | TCONS_00028356-exon-sc0000675-1510915933:1..2810 | Clytia hemisphaerica | exon |
| TCONS_00028356-exon-sc0000675-1575043694:1..2810 | TCONS_00028356-exon-sc0000675-1575043694:1..2810 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000675 | supercontig | sc0000675:1..2810 + |
Blast
The following BLAST results are available for this feature:
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