TCONS_00028357 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028357
Unique NameTCONS_00028357
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028357 ID=TCONS_00028357|Name=TCONS_00028357|organism=Clytia hemisphaerica|type=transcript|length=2429bp
AAGTCACCAGGACGTAAATTTATTCTTCACTTGCGTCCCCATGGCGATGA
ACAAACAAAACAACGAAAGATGCTGCCCCTAAAGCGAGAAAATACTGCTG
TCCCTGCTGGNATATCCCTGGGGACAAGTCACCAGGACGTAAATTTATTC
TTCACTTGCGTCCCCATGGCGATGAACAAACAAAACAACGAAAGATGCTG
CCCCTAAAGCGAGAAAATACTGCTGTCCCTGCTGGTGATGATCTTTTTGC
ATCACGGTTTGGTAAGGAGGATGAGGATGCTGCCGAGTCTACGTGGAGTG
CCTGGAGAATGGGACGGGAAGCAGATACTGTGGACACCACCAAGAGGGTA
AAGGATGCTGAGTCAGCATGGAGTGTTTGGAGGATGGGACGGGAAACGGA
TGGCACTACCACTGTAAAGGACGCCACCACGAGGGAGCGAGATGCCTCTA
TCCCCAGTCATCCAAAATATCGAGTGTTTAGGTCAGGTCGAGAAGCCGAA
AAGTCGCTTCCAATGTCAAGAGCATTTGGTGGAAAAAGGGATTCACCCGG
CGATGCTCCTATTCCTTNCAAGTCACCAGGACGTAAATTTATTCTTCACT
TGCGTCCCCATGGCGATGAACAAACAAAACAACGAAAGATGCTGCCCCTA
AAGCGAGAAGATACTGCTGTNCCCATCAAACTCATATCCCTGGGGACAAG
TCACCAGGACGTAAATTTATTCTTCACTTGCGTCCCCATGGCGATGAACA
AACAAAACAACGAAAGATGCTGCCCCTAAAGCGAGAAAATACTGCTGTCC
CTGCTGGTGATGATCTTTTTGCATCACGGTTTGGTAAGGAGGATGAGGAT
GCTGCCGAGTCTACGTGGAGTGCCTGGAGAATGGGACGGGAAGCAGATAC
TGTGGACACCACCAAGAGGGTAAAGGATGCTGAGTCAGCATGGAGTGTTT
GGAGGATGGGACGGGAAACGGATGGCACTACCACTGTAAAGGACGCCACC
ACGAGGGAGCGAGATGCCTCTATCCCCAGCCATCCAAGATATCAAGTATT
TAGGTCAGGTCGAGAAGCCGAAAAGTCGCTTCCAATGTCAAGAGCATTTG
GTGGAAAAAGGGATTCACCCGGCGATGCTCCTATTCCTTATTATTACTCA
TTCAACAACGAAGGAAAAGATTTTTCGTGGAACATCTTTGGTAGAAAGAG
AGCAGCTGAGTCCGATCTTCCAATGTCCAGATTTGTCGATGGTCGAAAGA
GGGATTTACCCATGGGAAGAACGTTTTCCAAACGGAAATCCAACCGCATG
TTTTCTCGTGCCGACGTTCCGTTTTTCGTCAAGCGAGGTTCAAACCTACC
TATGAACAGAATGTTTTCTCGAAGTGCTGTTCCATACTTTGGAGAAGGAA
AGAGAGAATCGAATCATTTGCCAATGGGTATCTTTTCAAGAGAAAAAACC
AACGCTGATGTTCCGTTTTACGTAAAACGTGCTTCAAGCCTTCCTATCGG
TCATATGTTCTCCAAAAGAGCAAATTCCCTCAACAATCGCCTACCAATGC
AACTTGGATTTAAACGAGCCTCAAATCTACCAATGACCAGAATGTTTTCC
AAGAGGGCGAGTCTACCAATGCTACTTGGAGTAGTCAAAAAGGAGCATGG
TGGATTTCCGCGAGCACCTGAATACAACTGGGGTCCAGCTTCCTTGAAAT
ATCACCGCCGTAGCTTCCTTCCAATGATAATGCACGAAAGAAAAAGACGC
TTCAATGGATTCAGACCAGTCGTGAGTGGAATTATCATTAATGACCAAAA
CCgtaaattgaaaaacaatttcaatgactTTCATGTTAAAAAACTTTGAG
TATAATCCCATAGGAAGCCTTTGGATGGTACACTGATTTCATGATCAGAA
TAAATATAATGGAAACTTTAgatgttatgatttttattATTTCCGAGTTA
GAGTTTATTACGATGTTGGAGGAACTGCGTCAATGCGCTACATAAACATA
GACCGTGGAGGCAGTTTCTCAATCACGgcaaagcaaaatattttgattgc
agtttttttgaaagtggtacccggaACGAAAGCGCTATATCTACTTGTCA
TTAGGCAAAGTTTTGACACTACAATGACTTTTGTGTGGTTACCGCTTTCA
AAAAAACTGGATATAGCTTGTTCCAAGGTCTATTAGAGGTCAATCGCTAC
ATAATACCAATCACAttccaacctcgttccctgtgtattatcagcttttt
gatgcctactgatagcgctagataatattctcAGGCGTTCATAGGTAata
taaataaagcctggggtACACATGGACGAGGTTGAGTTCTATTAAGTTCT
AAATCAAGCCTCGTGTTctcaaattattcttataataGAACAAGCTAAAA
AAATCGTGTTATAGGATTGAAAAATGACG
Run BLAST on NCBI

protein sequence of TCONS_00028357-protein

>TCONS_00028357-protein ID=TCONS_00028357-protein|Name=TCONS_00028357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MLPLKRENTAVPAGDDLFASRFGKEDEDAAESTWSAWRMGREADTVDTTK
RVKDAESAWSVWRMGRETDGTTTVKDATTRERDASIPSHPRYQVFRSGRE
AEKSLPMSRAFGGKRDSPGDAPIPYYYSFNNEGKDFSWNIFGRKRAAESD
LPMSRFVDGRKRDLPMGRTFSKRKSNRMFSRADVPFFVKRGSNLPMNRMF
SRSAVPYFGEGKRESNHLPMGIFSREKTNADVPFYVKRASSLPIGHMFSK
RANSLNNRLPMQLGFKRASNLPMTRMFSKRASLPMLLGVVKKEHGGFPRA
PEYNWGPASLKYHRRSFLPMIMHERKRRFNGFRPVVSGIIINDQNRKLKN
NFNDFHVKKL
Run BLAST on NCBI

transcript from alignment at sc0000675:2..2647+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028357 ID=TCONS_00028357|Name=TCONS_00028357|organism=Clytia hemisphaerica|type=transcript|length=2646bp|location=Sequence derived from alignment at sc0000675:2..2647+ (Clytia hemisphaerica)
AAGTCACCAGGACGTAAATTTATTCTTCACTTGCGTCCCCATGGCGATGA
ACAAACAAAACAACGAAAGATGCTGCCCCTAAAGCGAGAAAATACTGCTG
TCCCTGCTGGNATATCCCTGGGGACAAGTCACCAGGACGTAAATTTATTC
TTCACTTGCGTCCCCATGGCGATGAACAAACAAAACAACGAAAGATGCTG
CCCCTAAAGCGAGAAAATACTGCTGTCCCTGCTGGTGATGATCTTTTTGC
ATCACGGTTTGGTAAGGAGGATGAGGATGCTGCCGAGTCTACGTGGAGTG
CCTGGAGAATGGGACGGGAAGCAGATACTGTGGACACCACCAAGAGGGTA
AAGGATGCTGAGTCAGCATGGAGTGTTTGGAGGATGGGACGGGAAACGGA
TGGCACTACCACTGTAAAGGACGCCACCACGAGGGAGCGAGATGCCTCTA
TCCCCAGTCATCCAAAATATCGAGTGTTTAGGTCAGGTCGAGAAGCCGAA
AAGTCGCTTCCAATGTCAAGAGCATTTGGTGGAAAAAGGGATTCACCCGG
CGATGCTCCTATTCCTTNCAAGTCACCAGGACGTAAATTTATTCTTCACT
TGCGTCCCCATGGCGATGAACAAACAAAACAACGAAAGATGCTGCCCCTA
AAGCGAGAAGATACTGCTGTNCCCATCAAACTCATATCCCTGGGGACAAG
TCACCAGGACGTAAATTTATTCTTCACTTGCGTCCCCATGGCGATGAACA
AACAAAACAACGAAAGATGCTGCCCCTAAAGCGAGAAAATACTGCTGTCC
CTGCTGGTGATGATCTTTTTGCATCACGGTTTGGTAAGGAGGATGAGGAT
GCTGCCGAGTCTACGTGGAGTGCCTGGAGAATGGGACGGGAAGCAGATAC
TGTGGACACCACCAAGAGGGTAAAGGATGCTGAGTCAGCATGGAGTGTTT
GGAGGATGGGACGGGAAACGGATGGCACTACCACTGTAAAGGACGCCACC
ACGAGGGAGCGAGATGCCTCTATCCCCAGCCATCCAAGATATCAAGTATT
TAGGTCAGGTCGAGAAGCCGAAAAGTCGCTTCCAATGTCAAGAGCATTTG
GTGGAAAAAGGGATTCACCCGGCGATGCTCCTATTCCTTATTATTACTCA
TTCAACAACGAAGGAAAAGATTTTTCGTGGAACATCTTTGGTAGAAAGAG
AGCAGCTGAGTCCGATCTTCCAATGTCCAGATTTGTCGATGGTCGAAAGA
GGGATTTACCCATGGGAAGAACGTTTTCCAAACGGAAATCCAACCGCATG
TTTTCTCGTGCCGACGTTCCGTTTTTCGTCAAGCGAGGTTCAAACCTACC
TATGAACAGAATGTTTTCTCGAAGTGCTGTTCCATACTTTGGAGAAGGAA
AGAGAGAATCGAATCATTTGCCAATGGGTATCTTTTCAAGAGAAAAAACC
AACGCTGATGTTCCGTTTTACGTAAAACGTGCTTCAAGCCTTCCTATCGG
TCATATGTTCTCCAAAAGAGCAAATTCCCTCAACAATCGCCTACCAATGC
AACTTGGATTTAAACGAGCCTCAAATCTACCAATGACCAGAATGTTTTCC
AAGAGGGCGAGTCTACCAATGCTACTTGGAGTAGTCAAAAAGGAGCATGG
TGGATTTCCGCGAGCACCTGAATACAACTGGGGTCCAGCTTCCTTGAAAT
ATCACCGCCGTAGCTTCCTTCCAATGATAATGCACGAAAGAAAAAGACGC
TTCAATGGATTCAGACCAGTCGTGAGTGGAATTATCATTAATGACCAAAA
CCgtaaattgaaaaacaatttcaatgactTTCATGTTAAAAAACTTTGAG
TATAATCCCATAGGAAGCCTTTGGATGGTACACTGATTTCATGATCAGAA
TAAATATAATGGAAACTTTAgatgttatgatttttattATTTCCGAGTTA
GAGTTTATTACGATGTTGGAGGAACTGCGTCAATGCGCTACATAAACATA
GACCGTGGAGGCCAACCTCGTACCCAGGGCGATAAGCTTTCTGATATTAG
ATAGGACGCTTANCATAGACCGTGGAGGCCAACCTCGTACCCAGGGCGAT
AAGCTTTCTGATATTAGATAGGACGCTTAGTAACAGTGAGCTTCCTATTT
GCCTCTCATCTAGACTAGCAACTATATTTTCCCGCGCGGCCGCTGACTGT
TCGCCATGGAATCGAGGTTGCGTGGAGGCAGTTTCTCAATCACGgcaaag
caaaatattttgattgcagtttttttgaaagtggtacccggaACGAAAGC
GCTATATCTACTTGTCATTAGGCAAAGTTTTGACACTACAATGACTTTTG
TGTGGTTACCGCTTTCAAAAAAACTGGATATAGCTTGTTCCAAGGTCTAT
TAGAGGTCAATCGCTACATAATACCAATCACAttccaacctcgttccctg
tgtattatcagctttttgatgcctactgatagcgctagataatattctcA
GGCGTTCATAGGTAatataaataaagcctggggtACACATGGACGAGGTT
GAGTTCTATTAAGTTCTAAATCAAGCCTCGTGTTctcaaattattcttat
aataGAACAAGCTAAAAAAATCGTGTTATAGGATTGAAAAATGACG

Coding sequence (CDS) from alignment at sc0000675:2..2647+

>TCONS_00028357 ID=TCONS_00028357|Name=TCONS_00028357|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at sc0000675:2..2647+ (Clytia hemisphaerica)
ATGCTGCCCCTAAAGCGAGAAAATACTGCTGTCCCTGCTGGTGATGATCT
TTTTGCATCACGGTTTGGTAAGGAGGATGAGGATGCTGCCGAGTCTACGT
GGAGTGCCTGGAGAATGGGACGGGAAGCAGATACTGTGGACACCACCAAG
AGGGTAAAGGATGCTGAGTCAGCATGGAGTGTTTGGAGGATGGGACGGGA
AACGGATGGCACTACCACTGTAAAGGACGCCACCACGAGGGAGCGAGATG
CCTCTATCCCCAGCCATCCAAGATATCAAGTATTTAGGTCAGGTCGAGAA
GCCGAAAAGTCGCTTCCAATGTCAAGAGCATTTGGTGGAAAAAGGGATTC
ACCCGGCGATGCTCCTATTCCTTATTATTACTCATTCAACAACGAAGGAA
AAGATTTTTCGTGGAACATCTTTGGTAGAAAGAGAGCAGCTGAGTCCGAT
CTTCCAATGTCCAGATTTGTCGATGGTCGAAAGAGGGATTTACCCATGGG
AAGAACGTTTTCCAAACGGAAATCCAACCGCATGTTTTCTCGTGCCGACG
TTCCGTTTTTCGTCAAGCGAGGTTCAAACCTACCTATGAACAGAATGTTT
TCTCGAAGTGCTGTTCCATACTTTGGAGAAGGAAAGAGAGAATCGAATCA
TTTGCCAATGGGTATCTTTTCAAGAGAAAAAACCAACGCTGATGTTCCGT
TTTACGTAAAACGTGCTTCAAGCCTTCCTATCGGTCATATGTTCTCCAAA
AGAGCAAATTCCCTCAACAATCGCCTACCAATGCAACTTGGATTTAAACG
AGCCTCAAATCTACCAATGACCAGAATGTTTTCCAAGAGGGCGAGTCTAC
CAATGCTACTTGGAGTAGTCAAAAAGGAGCATGGTGGATTTCCGCGAGCA
CCTGAATACAACTGGGGTCCAGCTTCCTTGAAATATCACCGCCGTAGCTT
CCTTCCAATGATAATGCACGAAAGAAAAAGACGCTTCAATGGATTCAGAC
CAGTCGTGAGTGGAATTATCATTAATGACCAAAACCgtaaattgaaaaac
aatttcaatgactTTCATGTTAAAAAACTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016070XLOC_016070Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028357-proteinTCONS_00028357-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028357-exon-sc0000675-1491911889:2..2011TCONS_00028357-exon-sc0000675-1491911889:2..2011Clytia hemisphaericaexon
TCONS_00028357-exon-sc0000675-1510915933:2..2011TCONS_00028357-exon-sc0000675-1510915933:2..2011Clytia hemisphaericaexon
TCONS_00028357-exon-sc0000675-1575043694:2..2011TCONS_00028357-exon-sc0000675-1575043694:2..2011Clytia hemisphaericaexon
TCONS_00028357-exon-sc0000675-1491911889:2229..2647TCONS_00028357-exon-sc0000675-1491911889:2229..2647Clytia hemisphaericaexon
TCONS_00028357-exon-sc0000675-1510915933:2229..2647TCONS_00028357-exon-sc0000675-1510915933:2229..2647Clytia hemisphaericaexon
TCONS_00028357-exon-sc0000675-1575043694:2229..2647TCONS_00028357-exon-sc0000675-1575043694:2229..2647Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000675supercontigsc0000675:2..2647 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.178317	0.328375	0.0106984	0	0.154205	0.0278608	0	0	1.01133	0.836202	0.80096	1.11729	2.59746	2.28752	0.107148	0.093194	1.3798	1.70592	7.55618	12.2689	4.25927	4.03743	0.562013	1.06689	0.000380115	0.583654	0.0531706	0	0.0641275	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028357 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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