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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028375 ID=TCONS_00028375|Name=TCONS_00028375|organism=Clytia hemisphaerica|type=transcript|length=2452bp
cagaaaacgaGTTATTCTGCGCTGACAGCCACGCAGGAATGTTTTTCAAC
AAGGACAATCTTGATTCACGACAAAAAGAGGGAAAGAACAATCGAAAATA
CACAATCTATTTCCAAGGCTACCGGGACACAGCAGGATGCTACATGGATG
AGAGCTTCACTGACAATTTCCGACTCAATAACTTTAAGCTGTACAATGGT
TATGACATCAACAAGTTCAACTACTCATGGTGTAGCGAAAGTTTTGCTAA
TGGACTCTTTCTGAGACATCCTAAATGTGAGATCGACTTCTTAAGAATCA
ACCGACAATACAATGTCACTGAATACAAGTTTTTCAATAGATCGTTCTGT
CACGAATCCTTTGAAGATGGCATATTCTTGGCACATCCTTTCTGTCAATA
CAATTACACTGCCAATTACAACATGTCCAACTTTAGGACATCCTGGTGCA
ACAAGGATTATCAAAATGGCATCTTTATGAGACATCCAAGATGTGTGACA
TTCAGAAGTTATGATTTGAGACATTTCAACCAATCTTGGTGTAACGAGAC
GTTTGAAGATGGATTATTTGTCAACCATCCTTTCTGCCAAGTTAACTTCA
CTGAAGTCAACTCGACATGGTGCAGCGAAGAATACAGATTCGGAGAAGAA
GATGAAGTTTCAAATAACGTATTCAGGCATCACCCAAGATGTCAGCTCTA
CTTCAACTACAACTTGAGTCGTTTCAATCAATCTTGGTGTAACGAGACAT
TCGAGGAAGGACTATTCAGAGATCACCCTTTCTGTCAAGTCAATTTCACT
GATGTTAACTCAACATGGTGCAGAAGAGATTACAGATTCAGAGGAGATTA
CAACTATGATAACATGACTGAAAGAAACATCTTCAGAGAGCATCCAAGAT
GCCAACTCTATTTCAGCTACAACTTGACTGATTTCAACCAGACTTGGTGC
AACGAAACATTCGAAGATGGACTTTTCACAGATCACCCCTTCTGCCAAGT
AAATTTCACAGAAGTCAACTCCGCCTGGTGCAGCAGAGACTACAGATTCA
AAGGAGAATTCACGCAAGAAAACATGACTGAGAACATCTTCAGAGAGCAT
CCAAGATGTCAAACCTTTTTCAACTACAACATGCGTCATTTCAATCAATC
TTGGTGtaacaaaacattcgaagaTGGACTTTTCAGAGATCATCCTTTCT
GTCAAGTCAATTTCACTGATGTTAACTCAACTTGGTGTAGCAGAGACTAC
AGATTCAAAGGAGAATTCACGCAAGAAAACATGACTGAGAACATCTTCAG
AGAGCATCCAAGGTGTCAATTATTCTTTAGCTATAATCTAACAGAATTCA
ACCAAACATGGTGTAACGAAACATTTGAAGAAGGAGTCTTCAGCGACCAC
TACTTCTGCCAAGTCAACTTCACTGATGTCAAAGCTTCCTGGTGCTATAG
AAACTATAGAAACGGATCTTTCATGAATCATCCAAGATGTCAACTATACT
TCAACTACAACATGACTGACTTCAATCAAACTTGGTGTAACAAGACATTC
GAAGATGGACTTTTCCGCAACGAATTCTTCTGCCAATTCCAATACAGTGA
CATCAGATCATCATGGTGCCAACGTAACTATAGAAACGGATCTTTCTATG
ACCACCCGATGTGCCGAAGATACCGTGAATATAACTTAATGATGATTAAT
CAAACATGGTGTGATAGATCTTTTGAACACGGTCTTTTCAGAGATGATCT
TTTCTGTCAATACAGATACCAAACGATCAACTCATCCTTCTGTAGCTTCG
TTTTCGAAAATGGTGTTTTCCAAAACTACACATTCTGTCAACGATTCTAC
TCATACAACTTCACCAACTTTAATCAGTCTTGGTGCAATGAAACCTTTGA
AGATGGACTTTTCAACGACCACGCTTTGTGCCGAATGAACTTCTCTCGAT
ATGATACAAGAGACTTCAATGTATCTTGGTGCAATGAAACATACAAAGAA
GGTATTTTCATCCATCATCCATTCTGTTACCAAATCTACAAAAACTACAA
TCTCAATAACTTCAAGGACTCCTGGTGTGATGTCAACTACGAATACGGAA
TCTTCAGAAGACATCCAGTCTGTAATGATTATCTCCGAAGACAAACGGAG
CGACAACTCGTCTTCATCAATGCTACTAATTCACTCCGATTCAACAATAG
CGTCTACTTGGCTTCACAATATGATAAATGTGGAATGAAAGTGAACTTCG
ATCAAGATTACATCATGTTTAACCAAACAATCGTCGTTGTTTATGGTGAC
AACCACGGTCAAAATAATGGTCTAGTTGAACGTGAAGAGAAAGATTATTA
TCATTTCATGTGCCGAAGAAATCGCACCATTGTTGAGAAATTGTTCGGTG
GTGGTTACTTCAATACCACATTCAGAAAGGATGGGGAACGTGAAGACAGT
AA Run BLAST on NCBI transcript from alignment at sc0000675:158622..165077+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028375 ID=TCONS_00028375|Name=TCONS_00028375|organism=Clytia hemisphaerica|type=transcript|length=6456bp|location=Sequence derived from alignment at sc0000675:158622..165077+ (Clytia hemisphaerica)
cagaaaacgaGTTATTCTGCGCTGACAGCCACGCAGGAATGTTTTTCAAC
AAGGACAATCTTGATTCACGACAAAAAGAGGGAAAGAACAATCGAAAATA
CACAATCTATTTCCAAGGCTACCGGGACACAGCAGGATGCTACATGGATG
AGAGCTTCACTGACAATTTCCGACTCAATAACTTTAAGCTGTACAATGGT
TATGACATCAACAAGTTCAACTACTCATGGTGTAGCGAAAGTTTTGCTAA
TGGACTCTTTCTGAGACATCCTAAATGTGAGATCGACTTCTTAAGAATCA
ACCGACAATACAATGTCACTGAATACAAGTTTTTCAATAGATCGTTCTGT
CACGAATCCTTTGAAGATGGCATATTCTTGGCACATCCTTTCTGTCAATA
CAATTACACTGCCAATTACAACATGTCCAACTTTAGGACATCCTGGTGCA
ACAAGGATTATCAAAATGGCATCTTTATGAGACATCCAAGATGTGTGACA
TTCAGAAGTTATGATTTGAGACATTTCAACCAATCTTGGTGTAACGAGAC
GTTTGAAGATGGATTATTTGTCAACCATCCTTTCTGCCAAGTTAACTTCA
CTGAAGTCAACTCGACATGGTGCAGCGAAGAATACAGATTCGGAGAAGAA
GATGAAGTTTCAAATAACGTATTCAGGCATCACCCAAGATGTCAGCTCTA
CTTCAACTACAACTTGAGTCGTTTCAATCAATCTTGGTGTAACGAGACAT
TCGAGGAAGGACTATTCAGAGATCACCCTTTCTGTCAAGTCAATTTCACT
GATGTTAACTCAACATGGTGCAGAAGAGATTACAGATTCAGAGGAGATTA
CAACTATGATAACATGACTGAAAGAAACATCTTCAGAGAGCATCCAAGAT
GCCAACTCTATTTCAGCTACAACTTGACTGATTTCAACCAGACTTGGTGC
AACGAAACATTCGAAGATGGACTTTTCACAGATCACCCCTTCTGCCAAGT
AAATTTCACAGAAGTCAACTCCGCCTGGTGCAGCAGAGACTACAGATTCA
AAGGAGAATTCACGCAAGAAAACATGACTGAGAACATCTTCAGAGAGCAT
CCAAGATGTCAAACCTTTTTCAACTACAACATGCGTCATTTCAATCAATC
TTGGTGtaacaaaacattcgaagaTGGACTTTTCAGAGATCATCCTTTCT
GTCAAGTCAATTTCACTGATGTTAACTCAACTTGGTGTAGCAGAGACTAC
AGATTCAAAGGAGAATTCACGCAAGAAAACATGACTGAGAACATCTTCAG
AGAGCATCCAAGGTGTCAATTATTCTTTAGCTATAATCTAACAGAATTCA
ACCAAACATGGTGTAACGAAACATTTGAAGAAGGAGTCTTCAGCGACCAC
TACTTCTGCCAAGTCAACTTCACTGATGTCAAAGCTTCCTGGTGCTATAG
AAACTATAGAAACGGATCTTTCATGAATCATCCAAGATGTCAACTATACT
TCAACTACAACATGACTGATTTCAACCAAACTTGGTGTAACGAGACATTT
GAGGAAGGACTTTTCATGGATCACCCATTCTGCCAAGTCAAATTCACTGA
CGTCAACTCAACATGGTGTAGAGAGGATTTCAGATACAATGAAGACAGCC
GGTTTGACCAAGACAACAGATTCAACGAAGATAATAGATTCAACGAAAAC
CGCAGTTTCAACGAAACCTACAGATTCCAAGAAGAATTCAACAGAAGATC
CCAGAAAAACAGAAACGATACAAGGTTCTATAACATCTTCAGAGAACACC
CAAGATGTCAAAAGTTCTTTAGCTACAACATGACTGATTTCAATCAAACT
TGGTGTAATGAAACATTTGAGGATGGGCTTTTTAAGTCTCATCCATTCTG
TCAATACAACTTCACTGATATCACATCAAGATGGTGTAACCGAAGCTACG
AGAATGGTACTTTCATGCATCACCCGAGATGTCAAAGATTCTTCCAATAC
AAGATGACCGAGTTCAACCAAACATGGTGCCGTGAATCTTTCGAAAATGG
ACTTTTCAGTGATCAATACTACTGTCAATTCAATTTCTCCAGATTTAACT
TCTCATGGTGCGAAGCTGAATATGAAAATGGAATCTTCATTGAACATCCA
AGATGCAGAAGGTTCTCCAACTACAATATTCGAAACTTTAATCAATCTTG
GTGCAACGAAACCTTTGAAGATGGACTTTTCAATAACTACCATCGTTTCT
GTGAATATAACTTCACTGATATCAAATCTCAATGGTGTAATGACTCCAAC
AAATTTGACACCAATGAAGACTTCAGACACCACCCAAGATGTCAACTTTA
TTTTAGTTACAACATGAGCCACTTCAACCAAACTTGGTGCAACGAAACTT
TCGAGGATGGTCTCTTTATGGATCACCCATTCTGCTTGACCAACTATTCT
CAAATAAACTCAACTTGGTGTTATCGAAGTTACGAAAACGGTACATTCAT
GGAGCATCCAAGATGCCAGCTATTCTTTGGCTACAACATGACTAACTTCA
ACCGATCATGGTGCAACGAGACTTTCGAAGATGGACTCTTTTTCGATCAC
CCATTCTGCAAAAACTACGATCACGTCAAATCAACCTGGTGCGACAGAAA
ATATGAAAACGGCACTTACATGATGCATCCAAAATGCGGGATCTTCTTCA
CCTACAACCTCACGGATTTCAACCGAACCTGGTGCAATGAAAGCTTTGCT
GAAGGAGTATTCACGGATCATCAATATTGCGTGAACTACAACAATGTCTC
TTCATCTTGGTgcaatgaaaaatatgaaaatggcTCATACATGATGCATC
CAAAATGCCAAATGTTCTTCAGCTACAACATCACAGACTTCAATCAAACT
TGGTGCAATGAGAGTTTTGCTGAGGGAGTCTTTATGGATCACCCCTTCTG
TCAAGTTAATTCCACTGACGTCAACTCAACATGGTGCAGCAGAGAATACA
GattcaacgaagacaaaagatTCGAAGAACGTTATAGAATGAGAGAGGAA
TACAGATTCGATAACGGCAGACATGACAATAAGTCTAGAAACATCTTCAG
AGACCATCCAAGATGTCAATTATTCTTCAGTTACAACATGACCGAATTCA
ACCAAACTTGGTGCAACGAGACATTCGAAGAAGGACTATTTGTCGACCAC
CATTTCTGCCAAGTTAACTTCTCACAAGTCAATTTCACCTGGTGCAGCAG
AGACTACAGAAACGGCAGCTTCATGGAACATCCACGATGTCAACTCTACT
TTAATTACGATATGTCAATGTTCAACCATTCGTGGTGTAACGAATCCTTC
GAAGATGGACTATTTGTCAACCACCCATTCTGCAGATACAACTTCAGCCA
AATCAACTCAACCTGGTGCAACCATAGCTTCGAGAACGGTACATTTATGC
AGCACCCAAGATGTTTCCTTTACTTCAGTTACAACTTAACAGAATTCAAT
CATACTTGGTGTAACGAATCCTTCGAAGATGGATTATTTgtagatcatcc
attctgcaaATACAATTTCACAGAGATCGATCCAGCTTGGTGTAACCGCA
ACTATCAAAATGGTACATTTATTGAACATCCAAGATGTCAACTTTTCCTG
AGCTACAATCTTCATGAATTCAATCAAACTTGGTGCAACGAAAGCTTTGC
TGAAGGTATATAAATTGTTCAAATTTCTTTCACGTATATTTTCCATAGTT
TTCAGTGAAAATAAGATTAAACTAAAAGCTTACTGTTTAATAACTGTTTC
TCAGATTGTCCTATTGAAAAGCAGCCCAATGTTACATCAAAATTCTATAA
AAATGCAAAAGTTTATAACTTGTTTTGATTCTATCTTTTCCAGGTATCTT
TATGAAGCATCCTTTCTGCGAATTCAATTACACCGAAGTCAACTCGACAA
TGTGTCATCGAAGATTCATGCGTGGAGTTTTCAGAGACCATCCAAGATGT
CAACTTTTCTTCAGCTACAACCTTACAGACTTCAATCAAACTTGGTGCAA
TGAGAGTTTTGCTGAGGGAGTCTTTATGGATCATCCGTTCTGTCAAGTCA
ACTTTACTGACGTCAACTCAACATGGTGCAGAAGAGACTACAGATTTGGT
GAGGACTACACATATGGAGAAGACTATAGACAAGATAACATGTCCCGAAA
CATTTTCAGACATCACCCAAGATGTCAGACCTTCTTCAGTTACAATATGA
CTGACTTCAACCAGACTTGGTGCAACGAAATATTCGAGGATGGACTTTTC
AGAGATCATCCCTTCTGCCAAGTCAATTTCACAGAAGTCAACTCCGCCTG
GTGCAGCAGAGACTACAGATTCAATAAAGATAACAGTAGCTTCACAGATG
AGTATAGATTCAGATTCCAGAACTATACAAATAACAACGACACTGAGAAC
ATCTTCAGAGAACATCCAAGATGTCAAACCTTTTTCAACTATAACATGAC
TGACTTCAATCAAACTTGGTGTAACAAGACATTCGAAGATGGACTTTTCC
GCAACGAATTCTTCTGCCAATTCCAATACAGTGACATCAGATCATCATGG
TGCCAACGTAACTATAGAAACGGATCTTTCTATGACCACCCGATGTGCCG
AAGATACCGTGAATATAACTTAATGATGATTAATCAAACATGGTGTGATA
GATCTTTTGAACACGGTCTTTTCAGAGATGATCTTTTCTGTCAATACAGA
TACCAAACGATCAACTCATCCTTCTGTAGCTTCGTTTTCGAAAATGGTGT
TTTCCAAAACTACACATTCTGTCAACGATTCTACTCATACAACTTCACCA
ACTTTAATCAGTCTTGGTGCAATGAAACCTTTGAAGATGGACTTTTCAAC
GACCACGCTTTGTGCCGAATGAACTTCTCTCGATATGATACAAGAGACTT
CAATGTATCTTGGTGCAATGAAACATACAAAGAAGgtatttaaattttct
ttttttgtcttttctattaTTCTAGTGCACTATGAGGACTTCTCGAGGGA
TCAAGTGGTTTTAACGAAAAAGCTAAGCGAAAGACTGAAATCATTTCACC
TTATTTCAAATTGAACAGTGAAAATAACTAACTTCGCTGTTGTGGAGAGT
TACTCCTAATGCTCGTTTGCAATTCCTGAGTCTTAAAAACCAAACCACTT
AATGAACTATATTTATCTGAAACGAGTTTAACTTTCATTAGACAACCAAA
GTCgtaaaatctttttctattCTCTATGACACAGGTATTTTCATCCATCA
TCCATTCTGTTACCAAATCTACAAAAACTACAATCTCAATAACTTCAAGG
ACTCCTGGTGTGATGTCAACTACGAATACGGAATCTTCAGAAGACATCCA
GTCTGTAATGATTATCTCCGAAGACAAACGGAGCGACAACTCGTCTTCAT
CAATGCTACTAATTCACTCCGATTCAACAATAGCGTCTACTTGGCTTCAC
AATATGATAAGTAAGTACCAAGGTATTTTGCCTGTCCCGGACGGACGGAC
ACAGCTATTTTTCTTGACACTGTTTCCGTCTGTAATAGGCTATTGCACAG
CCGCAAATCGTAATCGGTAATCTGGACCATTTGCGCGCTAATAACAACTG
AATATTGgtacaatgtttaaaaattttgaaaatctttgcgtCAAACCAAC
GGGAAACTGTTATcggggcgcaatcagtcctgattacccatgagccattt
cgactgtgaaatggccaaATTTTCCTCCAGCGATTGATGCGTTCACTTGA
AGTGATTGTAGTACTATCTTAAGCAATCAACGTCACTCGTAAAGCCGTCA
GTGATAAATCAACAAAGTGATAAAAAACGTGCTGCTGGATAGAGACATCC
TAAGTGTTCATTACCATAATCTGTTTGTTGTGAACGCCTCATTTTGACAC
TAAGCGCGGGCTAGGGAAGTGTAGTAGCCTCGTTATAACgcgaaaatata
agaaaaaattaaattaccCCCCAAAGAAGAAACTCCTTTGTCTTAAAAAG
GTTTTCTCGAAAATTGGCTATGCCTACGTAACTATCAATATTATATCAAT
TAGAGTTGAGTTGAGTTTAAAACTATCTTTCCATACGTGCAGCCTGGTGC
AGCGAGTAACTCTAAGAATGCATTACCGAGGAATTGCACTCAAGCGCTAC
TTTGAATAAAACCAATAAATCTTTATTCTAGATGTGGAATGAAAGTGAAC
TTCGATCAAGATTACATCATGTTTAACCAAACAATCGTCGTTGTTTATGG
TGACAACCACGGTCAAAATAATGGTCTAGTTGAACGTGAAGAGAAAGATT
ATTATCATTTCATGTGCCGAAGAAATCGCACCATTGTTGAGAAATTGTTC
GGTGGTGGTTACTTCAATACCACATTCAGAAAGGATGGGGAACGTGAAGA
CAGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028375-exon-sc0000675-1491911889:158622..160132 | TCONS_00028375-exon-sc0000675-1491911889:158622..160132 | Clytia hemisphaerica | exon |
| TCONS_00028375-exon-sc0000675-1510915933:158622..160132 | TCONS_00028375-exon-sc0000675-1510915933:158622..160132 | Clytia hemisphaerica | exon |
| TCONS_00028375-exon-sc0000675-1575043694:158622..160132 | TCONS_00028375-exon-sc0000675-1575043694:158622..160132 | Clytia hemisphaerica | exon |
| TCONS_00028375-exon-sc0000675-1491911889:163117..163606 | TCONS_00028375-exon-sc0000675-1491911889:163117..163606 | Clytia hemisphaerica | exon |
| TCONS_00028375-exon-sc0000675-1510915933:163117..163606 | TCONS_00028375-exon-sc0000675-1510915933:163117..163606 | Clytia hemisphaerica | exon |
| TCONS_00028375-exon-sc0000675-1575043694:163117..163606 | TCONS_00028375-exon-sc0000675-1575043694:163117..163606 | Clytia hemisphaerica | exon |
| TCONS_00028375-exon-sc0000675-1491911889:163906..164131 | TCONS_00028375-exon-sc0000675-1491911889:163906..164131 | Clytia hemisphaerica | exon |
| TCONS_00028375-exon-sc0000675-1510915933:163906..164131 | TCONS_00028375-exon-sc0000675-1510915933:163906..164131 | Clytia hemisphaerica | exon |
| TCONS_00028375-exon-sc0000675-1575043694:163906..164131 | TCONS_00028375-exon-sc0000675-1575043694:163906..164131 | Clytia hemisphaerica | exon |
| TCONS_00028375-exon-sc0000675-1491911889:164853..165077 | TCONS_00028375-exon-sc0000675-1491911889:164853..165077 | Clytia hemisphaerica | exon |
| TCONS_00028375-exon-sc0000675-1510915933:164853..165077 | TCONS_00028375-exon-sc0000675-1510915933:164853..165077 | Clytia hemisphaerica | exon |
| TCONS_00028375-exon-sc0000675-1575043694:164853..165077 | TCONS_00028375-exon-sc0000675-1575043694:164853..165077 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000675 | supercontig | sc0000675:158622..165077 + |
Blast
The following BLAST results are available for this feature:
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