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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028393 ID=TCONS_00028393|Name=TCONS_00028393|organism=Clytia hemisphaerica|type=transcript|length=1301bp
CCCCACTCTAACCTTGGAAGCATTTTGTTTCtaattccattgtttcttac
ttgaacttgcgttgaggAATTAGTtcgttttgctcactttttgatcaaat
cttaaaccaatcccaagaggagtacttggtaacgtgatcaaaaactgagc
aaaccgattttcatcttttcatgataacaaaggaaaaagcttcTAAACCA
ATATTCTTTATACAAGGACTATGCTCTAAGAAGTGTTTTGGTGTAGTAAT
TTAAGCAAGATTTCTCATCATATTTCAGAGGAAATGGTCCACTTCATTCG
CTACTGGAATTGGAAAAAGAAAGACCATTATTACAGTACTTCTTTCAACG
AACTCGGATTTGTAAAAAATACGTACTTTTTTCGAGGTGTTCAAGCTTTC
TTACTGAAATCGAAAGCTGTAGGTAGCACTGCTTTATATCAGTATTTCAA
AGATGGTGGTAATAACATTCGTAATACGGACCATTTTTACACTACAGACC
CTGATGAAACTTCCAGCGATGATAGCTTAGCAGGATACGGAGAAGAAAAA
GTAGTTGGATATTGTTTTGAAGAAGAAGTGGATGGCACCGTCCCCTTATA
TCGTTACTACAGAACCAGAAAGTTTAAGGACCATTTTTACACCACTGATG
GCCAGGAGTTGGGCACACCTGAAATAGGGAAAAATGCGAAGAGAAGATAC
GTTTATGAAGGAATTGCATGCCATGTCTACCCTGGATCTTACCCCTTGGC
TGAATATGATGAATGAAAACATTGTACGTCCGAACGATGTCCATATTAGG
GCTATAACATCCAATtgacgttaaatgaacgttgaaagaacgttgtaCCA
GTAGAGTTTTATAGTTTTGTATTTTTACTTTGTAgaataaaatttttcat
tttgcatTTTCATCTACTACTGTGGCTTTATATTTCTTACTCACACTATT
TCTACCATTATTTTAATGCAAGATCTTCTTTTATGCTTTCTTTTCATTCa
taattttattatatttcGCAACTTTGTAAATggataaattttatttgtta
tttGTCAGCTTTTATTTGGAATTTAAGGGCGTGCTATGATAACAAATGGG
AATTTTtccttttgtaaattttatttaaGAACGAAAGAAGCAAACCGTCA
CcgcaaatttattttcatccGAGGAAAATCAgaaactatttaagaacata
atCCTTCAACCCGAAAATCTAAGAACAGAATATTTCGAGGCTTCGTGTGC
TTTAGAAGATTACTCAGGAAATTTCcttaaaatactcaaaaattgctgaa
a Run BLAST on NCBI protein sequence of TCONS_00028393-protein >TCONS_00028393-protein ID=TCONS_00028393-protein|Name=TCONS_00028393-protein|organism=Clytia hemisphaerica|type=polypeptide|length=160bp
MVHFIRYWNWKKKDHYYSTSFNELGFVKNTYFFRGVQAFLLKSKAVGSTA
LYQYFKDGGNNIRNTDHFYTTDPDETSSDDSLAGYGEEKVVGYCFEEEVD
GTVPLYRYYRTRKFKDHFYTTDGQELGTPEIGKNAKRRYVYEGIACHVYP
GSYPLAEYDE Run BLAST on NCBI transcript from alignment at sc0000676:63406..65120+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028393 ID=TCONS_00028393|Name=TCONS_00028393|organism=Clytia hemisphaerica|type=transcript|length=1715bp|location=Sequence derived from alignment at sc0000676:63406..65120+ (Clytia hemisphaerica)
CCCCACTCTAACCTTGGAAGCATTTTGTTTCtaattccattgtttcttac
ttgaacttgcgttgaggAATTAGTtcgttttgctcactttttgatcaaat
cttaaaccaatcccaagaggagtacttggtaacgtgatcaaaaactgagc
aaaccgattttcatcttttcatgataacaaaggaaaaagcttcTAAACCA
ATATTCTTTATACAAGGACTATGCTCTAAGAAGTGTTTTGGTGTAGTAAT
TTAAGCAAGATTTCTCATCATATTTCAGAGGAAATGGTCCACTTCATTCG
CTACTGGAATTGGAAAAAGAAAGACCATTATTACAGTACTTCTTTCAACG
AACTCGGATTTGTAAAAAATACGTACTTTTTTCGAGGTGTTCAAGCTTTC
TTACTGAAATCGAAAGCTGTAGGTAGCACTGCTTTATATCAGTATTTCAA
AGATGGTGGTAATAACATTCGTAATACGGACCATTTTTACACTACAGACC
CTGATGAAACTTCCAGTAAGTATTTGTTTTATAGTTGAAACACTACAACT
TATTTCTATTCCTCTTAATCACGATCACGTATATAAAAGGCATATTATTA
GAAGGGGGTTATACACGAATGGAAATTTAGTGCATAAGTCGTTTTGAGCC
TATTTCATTATTTCATTCTTGCATATGTTACATACTGTATTAAATACACG
ATTCCGGGGTAATAGACAATATCGGcttcacatgaaaactcagatttgac
ccccgagaattccccacgatgctttgtgcggaaaaaaattcaccgtgaac
ttttttccgcgcaaagcattgtgggtaattttcggaggtcaaatctgagt
tttcacgttaattCGATATCGTCTATACGAAAAAGTTACCGCTTTACTAA
TTAggatatttctttcttttcataatTAGGCGATGATAGCTTAGCAGGAT
ACGGAGAAGAAAAAGTAGTTGGATATTGTTTTGAAGAAGAAGTGGATGGC
ACCGTCCCCTTATATCGTTACTACAGAACCAGAAAGTTTAAGGACCATTT
TTACACCACTGATGGCCAGGAGTTGGGCACACCTGAAATAGGGAAAAATG
CGAAGAGAAGATACGTTTATGAAGGAATTGCATGCCATGTCTACCCTGGA
TCTTACCCCTTGGCTGAATATGATGAATGAAAACATTGTACGTCCGAACG
ATGTCCATATTAGGGCTATAACATCCAATtgacgttaaatgaacgttgaa
agaacgttgtaCCAGTAGAGTTTTATAGTTTTGTATTTTTACTTTGTAga
ataaaatttttcattttgcatTTTCATCTACTACTGTGGCTTTATATTTC
TTACTCACACTATTTCTACCATTATTTTAATGCAAGATCTTCTTTTATGC
TTTCTTTTCATTCataattttattatatttcGCAACTTTGTAAATggata
aattttatttgttatttGTCAGCTTTTATTTGGAATTTAAGGGCGTGCTA
TGATAACAAATGGGAATTTTtccttttgtaaattttatttaaGAACGAAA
GAAGCAAACCGTCACcgcaaatttattttcatccGAGGAAAATCAgaaac
tatttaagaacataatCCTTCAACCCGAAAATCTAAGAACAGAATATTTC
GAGGCTTCGTGTGCTTTAGAAGATTACTCAGGAAATTTCcttaaaatact
caaaaattgctgaaa Coding sequence (CDS) from alignment at sc0000676:63406..65120+ >TCONS_00028393 ID=TCONS_00028393|Name=TCONS_00028393|organism=Clytia hemisphaerica|type=CDS|length=966bp|location=Sequence derived from alignment at sc0000676:63406..65120+ (Clytia hemisphaerica)
ATGGTCCACTTCATTCGCTACTGGAATTGGAAAAAGAAAGACCATTATTA
CAGTACTTCTTTCAACGAACTCGGATTTGTAAAAAATACGTACTTTTTTC
GAGGTGTTCAAGCTTTCTTACTGAAATCGAAAGCTGTAGGTAGCACTGCT
TTATATCAGTATTTCAAAGATGGTGGTAATAACATTCGTAATACGGACCA
TTTTTACACTACAGACCCTGATGAAACTTCCAGCGATGATAGCTTAGCAG
GATACGGAGAAGAAAAAGTAGTTGGATATTGTTTTGAAGAAGAAGTGGAT
GGCACCGTCCCCTTATATCGTTACTACAGAACCAGAAAGTTTAAGGACCA
TTTTTACACCACTGATGGCCAGGAGTTGGGCACACCTGAAATAGGGAAAA
ATGCGAAGAGAAGATACGTTTATGAAGGAATTGCATGCCATGTCTACCCT
GGATCTTACCCCTTGGCTGAATATGATGAATGAATGGTCCACTTCATTCG
CTACTGGAATTGGAAAAAGAAAGACCATTATTACAGTACTTCTTTCAACG
AACTCGGATTTGTAAAAAATACGTACTTTTTTCGAGGTGTTCAAGCTTTC
TTACTGAAATCGAAAGCTGTAGGTAGCACTGCTTTATATCAGTATTTCAA
AGATGGTGGTAATAACATTCGTAATACGGACCATTTTTACACTACAGACC
CTGATGAAACTTCCAGCGATGATAGCTTAGCAGGATACGGAGAAGAAAAA
GTAGTTGGATATTGTTTTGAAGAAGAAGTGGATGGCACCGTCCCCTTATA
TCGTTACTACAGAACCAGAAAGTTTAAGGACCATTTTTACACCACTGATG
GCCAGGAGTTGGGCACACCTGAAATAGGGAAAAATGCGAAGAGAAGATAC
GTTTATGAAGGAATTGCATGCCATGTCTACCCTGGATCTTACCCCTTGGC
TGAATATGATGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028393-exon-sc0000676-1491911889:63406..63920 | TCONS_00028393-exon-sc0000676-1491911889:63406..63920 | Clytia hemisphaerica | exon |
| TCONS_00028393-exon-sc0000676-1510915933:63406..63920 | TCONS_00028393-exon-sc0000676-1510915933:63406..63920 | Clytia hemisphaerica | exon |
| TCONS_00028393-exon-sc0000676-1575043694:63406..63920 | TCONS_00028393-exon-sc0000676-1575043694:63406..63920 | Clytia hemisphaerica | exon |
| TCONS_00028393-exon-sc0000676-1491911889:64335..65120 | TCONS_00028393-exon-sc0000676-1491911889:64335..65120 | Clytia hemisphaerica | exon |
| TCONS_00028393-exon-sc0000676-1510915933:64335..65120 | TCONS_00028393-exon-sc0000676-1510915933:64335..65120 | Clytia hemisphaerica | exon |
| TCONS_00028393-exon-sc0000676-1575043694:64335..65120 | TCONS_00028393-exon-sc0000676-1575043694:64335..65120 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000676 | supercontig | sc0000676:63406..65120 + |
Blast
The following BLAST results are available for this feature:
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