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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028398 ID=TCONS_00028398|Name=TCONS_00028398|organism=Clytia hemisphaerica|type=transcript|length=952bp
ccccccccccgggttaatAATGTGATTTGGTGGCTGACAAAAGTCTTTTT
TAAAGGGAATTAAATTTGGTGATATTTTGTTTGGGGGATCCTTTTTTGAA
ACTAGAACAGCTATGTTTAGGGAATGTTGAAATGATGGTGGATGGTGGAA
GAAACAAATCCTGGGGGAAACTTGATTTGACAGATTTTGGGTGAAACTGC
TtattcttcctttaaggtaatcaAATATTATTCAAATCTGAAACTCGTTT
AAATTTTGGGTTATTTTATGATTACGATTTGGAGCCAAATCACGTTCAAC
CAAAGTCATTTGGAATGATAAATTATTAGTGCTTGTCGCCTGATGATAAC
TTTGATGATGTATATTCCCTTTTTGCTCACAgataaaaactttgttttgc
TGTGGTTTGATAAGTAACGGTTGGTGTTGCTGGTGTTGATGCTGACTGTA
ATATAGACCTCCATGCATTTGGTTTTGATGATGATGCTGGTTGGGATTTT
CCCTCGGTGATAAGTGACATGGAATGTTGTTTATGTTGATTGCTAATCAT
GCAGTCATTACAAACAACCACCTTACAATTCTCACAAAAATATTTGAGTA
GCTCTTTATGTTTGGCGCAGTATCGAACTTGGTTGACAGATTCCTGTGAG
ACGGACGAAACTGCGACAATACAATGGCCAACAAAGCGAACACATCTTTG
ATGATAATTTGTACAATCTTTACATAAATTGAGAACACAATTTTTGCAAT
GGTTTGTGGCAGGTATTCCATTAGCACAGTCATGACAACATGGTTGATTT
CCTCTTGCAGATGTTTTCAGCTTTTCGATGATGTTTTGAGCAATATAATT
GGTAGATAGCCCTGATACACCATTTGGAACCTGCATATCAATTAAAAGTT
GATTTAAATATTATTCCCTTATGTAGTCTTAAATCCCCTAATAAAGGTGC
GG Run BLAST on NCBI transcript from alignment at sc0000676:131947..133299+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00028398 ID=TCONS_00028398|Name=TCONS_00028398|organism=Clytia hemisphaerica|type=transcript|length=1353bp|location=Sequence derived from alignment at sc0000676:131947..133299+ (Clytia hemisphaerica)
ccccccccccgggttaatAATGTGATTTGGTGGCTGACAAAAGTCTTTTT
TAAAGGGAATTAAATTTGGTGATATTTTGTTTGGGGGATCCTTTTTTGAA
ACTAGAACAGCTATGTTTAGGGAATGTTGAAATGATGGTGGATGGTGGAA
GAAACAAATCCTGGGGGAAACTTGATTTGACAGATTTTGGGTGAAACTGC
TtattcttcctttaaggtaatcaAATATTATTCAAATCTGAAACTCGTTT
AAATTTTGGGTTATTTTATGATTACGATTTGGAGCCAAATCACGTTCAAC
CAAAGTCATTTGGAATGATAAATTATTAGTGCTTGTCGCCTGATGATAAC
TTTGATGATGTATATTCCCTTTTTGCTCACAgataaaaactttgttttgc
TGTGGTTTGATAAGTAACGGTTGGTGTTGCTGGTGTTGATGCTGACTGTA
ATATAGACCTCCATGCATTTGGTTTTGATGATGATGCTGGTTGGGATTTT
CGTAagaatgatattttttattgaaatcaaATTCTTTATCCAGCAAGTCC
AAATGATTCGATAAATCCATGATAATCTCCATGTTGTCATAGTTGTCATT
TTTCATCACTTCTTTCACATATTCTAAAGAATCCGATATCTTCTTTAAGG
CCGTTGAGAATTTATCAAATGATTGGAAATTACTCTCCTTTTTAATTTGG
TCAACCAATTGCTTTTCTCTCTTAGCTACTTCTTTTCTAATTTCGACAAA
AACCTTCTTGACCAACAAGACAGATTTATCTTCGGCAGCCTCAactcttt
ttttaaaattttcaccttCTTTGTGAGTATTGAGCAAATTTTGTTTACAT
TCCAGGCCTTTTAACAGCTtttgtttcaattctttttttgctttctcTTT
AGCCTCGGTGATAAGTGACATGGAATGTTGTTTATGTTGATTGCTAATCA
TGCAGTCATTACAAACAACCACCTTACAATTCTCACAAAAATATTTGAGT
AGCTCTTTATGTTTGGCGCAGTATCGAACTTGGTTGACAGATTCCTGTGA
GACGGACGAAACTGCGACAATACAATGGCCAACAAAGCGAACACATCTTT
GATGATAATTTGTACAATCTTTACATAAATTGAGAACACAATTTTTGCAA
TGGTTTGTGGCAGGTATTCCATTAGCACAGTCATGACAACATGGTTGATT
TCCTCTTGCAGATGTTTTCAGCTTTTCGATGATGTTTTGAGCAATATAAT
TGGTAGATAGCCCTGATACACCATTTGGAACCTGCATATCAATTAAAAGT
TGATTTAAATATTATTCCCTTATGTAGTCTTAAATCCCCTAATAAAGGTG
CGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00028398-exon-sc0000676-1491911889:131947..132447 | TCONS_00028398-exon-sc0000676-1491911889:131947..132447 | Clytia hemisphaerica | exon |
| TCONS_00028398-exon-sc0000676-1510915933:131947..132447 | TCONS_00028398-exon-sc0000676-1510915933:131947..132447 | Clytia hemisphaerica | exon |
| TCONS_00028398-exon-sc0000676-1575043694:131947..132447 | TCONS_00028398-exon-sc0000676-1575043694:131947..132447 | Clytia hemisphaerica | exon |
| TCONS_00028398-exon-sc0000676-1491911889:132849..133299 | TCONS_00028398-exon-sc0000676-1491911889:132849..133299 | Clytia hemisphaerica | exon |
| TCONS_00028398-exon-sc0000676-1510915933:132849..133299 | TCONS_00028398-exon-sc0000676-1510915933:132849..133299 | Clytia hemisphaerica | exon |
| TCONS_00028398-exon-sc0000676-1575043694:132849..133299 | TCONS_00028398-exon-sc0000676-1575043694:132849..133299 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000676 | supercontig | sc0000676:131947..133299 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005622 | intracellular |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005622 |
intracellular |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
The following BLAST results are available for this feature:
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