TCONS_00028403 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028403
Unique NameTCONS_00028403
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1280

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028403 ID=TCONS_00028403|Name=TCONS_00028403|organism=Clytia hemisphaerica|type=transcript|length=1280bp
cttataaaaaacattcatTTAAAAGCCTAACTGGGAGATCAATCTGCAGG
CCCAACAATATAGCTTAGCGTTCATTCATAAAACTTTAATAGTATTGGCA
AAAAACTATAATAACATTcacaaaacattcacaaaagcCCTATAATGTCC
ATATTACATCCATAATATGTCTTATCGTCATAATAGAACCATAGTGAGGT
CCTTATTATCAATTGATAGTATACATTATggattttattttgtatattgC
ATAGTATATAATCTTTGGATTTGTTGttcgaaaaaattattttaggtTTT
TGCACTGAATAGTAGAGAGGAAGGCTTGTTTGGGAAGTTTTCATCCGAAT
ATAGAATTATTTGTCATCTTCTGCAACCTCAACCACAATCAACTATGGCA
AAACGAACACAGAAGAAAACACCAGTGAATAAAGTTGCCAAAGTTTCAAA
ATCAAAGCCAGCAGGTAAAAAGACCAAACCCGCCAAGAAACCCGTCAAGA
AAACAGCACCCAAGAAAACCACATCAAAAACAAGCACCTCAAGACCTCGA
CGAAGCTCAAGAAAATAGgGTCTTCCAACTATTGTCGATTTTCAGATTTG
CGAATGATGTAACAGAATCTCAAATGATATAAtcttgttttaattttatt
gTATGTTTAAACTATCTAAATAATTGTATTTAATTGTATTTAAATGACAA
CCAATATAATCCTAGTTTTAATCTagaattttttaataatttcaagTCTA
TTTAGTACTTAGCCCCTGCGAATGTTGTTGTGTTTTTACCATCTTAACTA
CTCTCGCATACCTAATAatataaacggggggggggggttggaataagcga
agatgtaccctgagtatcagaggttgagttttcagagaatatatcaacct
ctgaggagaagtaaagaaattttatcgcacATCACTATAACTATCACtta
tcactgtagaaagaatcaaagatagCAAATATATGCCATAATGtttagca
gactgtatcaataTACATGTTTACTAatgacgaattccccagaagcctcc
aagtgtaattgaaatgagtttctttcaaaagaaatcttctacacGATTCC
caaatttcaatgaattttaTAACCCATAGTGGGATTATGTTACTTGGAAT
TTAGACGTTTGAGAGGGTTAAGAAATGAGATTTCATCTAAACTTACAACC
CTTAGTGGGATTGTGAAGATCAAAacaaggcacccttaagggcggcacat
acccgtacccttctTATGCCTaggtgcccc
Run BLAST on NCBI

transcript from alignment at sc0000676:149432..152543-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028403 ID=TCONS_00028403|Name=TCONS_00028403|organism=Clytia hemisphaerica|type=transcript|length=3112bp|location=Sequence derived from alignment at sc0000676:149432..152543- (Clytia hemisphaerica)
CTTATAAAAAACATTCATTTAAAAGCCTAACTGGGAGATCAATCTGCAGG
CCCAACAATATAGCTTAGCGTTCATTCATAAAACTTTAATAGTATTGGCA
AAAAACTATAATAACATTCACAAAACATTCACAAAAGCCCTATAATGTCC
ATATTACATCCATAATATGTCTTATCGTCATAATAGAACCATAGTGAGGT
CCTTATTATCAATTGATAGTATACATTATGGATTTTATTTTGTATATTGC
ATAGTATATAATCTTTGGATTTGTTGTTCGAAAAAATTATTTTAGGTTTT
TGCACTGAATAGTAGAGAGGAAGGCTTGTTTGGGAAGTTTTCATCCGAAT
ATAGAATTATTTGTCATCTTCTGCAACCTCAACCACAATCAACTATGGCA
AAACGAACACAGAAGAAAACACCAGTGAATAAAGTTGCCAAAGTTTCAAA
ATCAAAGCCAGCAGGTAAATTCATTCACTTTCTTTTCGTTTTGTTCAAAA
GCAGCTGATTTGTCGTTCGTTTAGCTAGATTTCGAAAGACCTTTTTTACA
GAGAATGGTTGCTCTCATCAACAAAAGGAACGATGGAGCGGATGGCCAAG
TGGTCAAAGGCGTCAGTGTCTCAAACCAGGGATTCGCAGTTCGAAAAATG
TTCCGTTCAGTTCATAGATAGCTGAGCCGGCTTGCCGTGGACCCCGTGAA
AACAATCGAAAGACTGTCTAAAAGTCCTAGATTACTGGGCTATCCACGTA
AAATATCGACTCTATCTACAATAGCTCCGATATGTAAATTTGGAAGGCAA
AGCTGTGACTCAACTGACAATATCGTACCATTTCCCATGGCTTTTTAGAG
CCCCGTACCTTAAAATTTTCAGGGTGGAGGCGATAAAAGGTGCACCTGAT
AGCAATCAGCCTCAGTGCCGACCAAAAAAAAACTAGTCTAGTTTTAGTCT
TTACTTTCCGTGGTTGGGACTTTCTACAAAAATAGAATGAAAATTAATTG
ATGAATGGACACGGAAACTTTTTTTGTGTCCAACGCTACCTAGAAATATC
ACGATAAAACATATCAGGTTTTTGACTGCCTTAACGCTTAGCTTTATTTA
TCGAACGTACTTTCTATTCTCGATATGCTTAAGTCAATTTTCTAACGGAG
AAATCCGAAAATAAACCGGGATTTGACCCCTCTTTGTTTTTAAAAATAGG
AACACGGTGGTCAAAATCCCGGTGTTTTCGGGTACCTCCCTTTAGAAAGT
ACGACGTTCTCTTGACTTACACATATCAAGTTTCGATTCTCAAGCTTGAC
CAAGTCGTCCAATATCTAAATTAATCTCTTAATCAGAAACTGCAAACGAA
AACATGTATATCATAACATTTCAGGTAAAAAGACCAAACCCGCCAAGAAA
CCCGTCAAGAAAACAGCACCCAAGGTTTGTTAGACTTCTCACCTAACTTA
GTCTTTGTTTTCATCACACATTTGATTGTTGTATAATATTCATTAAGATG
CAGTGCAGCTGATATATGAAAATTTAAGGAAATTTAATTTTTGAAATATT
ACAAAAAAGGATAACAATAAGTGTTGTACCTTGTTGGAAACATAATAACG
AGTAGATTAATTCAAGCTTTGATTTTTGTTGGACAAAGATAAGGTAAGTT
TGAATTTCAATATGGGCCTTTAAATTCACTCATCGACCTGACACATTCCT
ATATCAAAACAAAAGAGATTCAAAATTTTCGATGTCATACGCACTAACTT
CCCTTTATAGAAAACCACATCAAAAACAAGCACCTCAAGACCTCGACGAA
GCTCAAGAAAATAGGTAAAAAATTGTCCATTCATCAATCAATTTTCATTC
TATATTTTTATGAAGGGATGTGCAGTATAATGTTAACCATACTGTTATAG
TAGCAATCTTATTTGGAGCGTCCTCTGATAATATTGCCCTGTTTCAACAA
TCTGTTACCTCGATGTATTCTGACGTACTATATTTACCTAACTAACAATC
CAAAAGTTTCCTTAAAACTATCGAAAGGGCCAAAAAGTTCAGTACCACAG
CACTATCCAAGTGTTTATACAATTTTGGCGCTTTTGATTGTGTTAATGGA
ATTTTTGGAGTGTTAAACCTTAAGGGAACTAACTTTGACGGTCGAAAAAG
AAATCACATTAACTTTCGCTGTTTTGCCTTATTTGGACACATTTCTTAAA
TTTTCCTTAGGGATTTTTCAAATTTTTTGATAAAAAATGGCCAACTTTAT
AATTCGAGGGTTCTGATTTTCCCGGTTTTGCCGAAAGACCACCAAAAAAG
CGAAAATTGGTTCCCCTAATAGGTAAGTACGGTATTCTATTCGGTGTACG
GTCATGATGTCCCATTTTACTAAATAATTATTTCATTTCTTTTATTTCAG
GGTCTTCCAACTATTGTCGATTTTCAGATTTGCGAATGATGTAACAGAAT
CTCAAATGATATAATCTTGTTTTAATTTTATTGTATGTTTAAACTATCTA
AATAATTGTATTTAATTGTATTTAAATGACAACCAATATAATCCTAGTTT
TAATCTAGAATTTTTTAATAATTTCAAGTCTATTTAGTACTTAGCCCCTG
CGAATGTTGTTGTGTTTTTACCATCTTAACTACTCTCGCATACCTAATAA
TATAAACGGGGGGGGGGGGTTGGAATAAGCGAAGATGTACCCTGAGTATC
AGAGGTTGAGTTTTCAGAGAATATATCAACCTCTGAGGAGAAGTAAAGAA
ATTTTATCGCACATCACTATAACTATCACTTATCACTGTAGAAAGAATCA
AAGATAGCAAATATATGCCATAATGTTTAGCAGACTGTATCAATATACAT
GTTTACTAATGACGAATTCCCCAGAAGCCTCCAAGTGTAATTGAAATGAG
TTTCTTTCAAAAGAAATCTTCTACACGATTCCCAAATTTCAATGAATTTT
ATAACCCATAGTGGGATTATGTTACTTGGAATTTAGACGTTTGAGAGGGT
TAAGAAATGAGATTTCATCTAAACTTACAACCCTTAGTGGGATTGTGAAG
ATCAAAACAAGGCACCCTTAAGGGCGGCACATACCCGTACCCTTCTTATG
CCTAGGTGCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016093XLOC_016093Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028403-exon-sc0000676-1575043694:152080..152543TCONS_00028403-exon-sc0000676-1575043694:152080..152543Clytia hemisphaericaexon
TCONS_00028403-exon-sc0000676-1575043694:151120..151169TCONS_00028403-exon-sc0000676-1575043694:151120..151169Clytia hemisphaericaexon
TCONS_00028403-exon-sc0000676-1575043694:150730..150783TCONS_00028403-exon-sc0000676-1575043694:150730..150783Clytia hemisphaericaexon
TCONS_00028403-exon-sc0000676-1575043694:149432..150143TCONS_00028403-exon-sc0000676-1575043694:149432..150143Clytia hemisphaericaexon
TCONS_00028403-exon-sc0000676-1510915933:152080..152543TCONS_00028403-exon-sc0000676-1510915933:152080..152543Clytia hemisphaericaexon
TCONS_00028403-exon-sc0000676-1510915933:151120..151169TCONS_00028403-exon-sc0000676-1510915933:151120..151169Clytia hemisphaericaexon
TCONS_00028403-exon-sc0000676-1510915933:150730..150783TCONS_00028403-exon-sc0000676-1510915933:150730..150783Clytia hemisphaericaexon
TCONS_00028403-exon-sc0000676-1510915933:149432..150143TCONS_00028403-exon-sc0000676-1510915933:149432..150143Clytia hemisphaericaexon
TCONS_00028403-exon-sc0000676-1491911889:152080..152543TCONS_00028403-exon-sc0000676-1491911889:152080..152543Clytia hemisphaericaexon
TCONS_00028403-exon-sc0000676-1491911889:151120..151169TCONS_00028403-exon-sc0000676-1491911889:151120..151169Clytia hemisphaericaexon
TCONS_00028403-exon-sc0000676-1491911889:150730..150783TCONS_00028403-exon-sc0000676-1491911889:150730..150783Clytia hemisphaericaexon
TCONS_00028403-exon-sc0000676-1491911889:149432..150143TCONS_00028403-exon-sc0000676-1491911889:149432..150143Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000676supercontigsc0000676:149432..152543 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.98755	1.48807	3.46057	2.89886	2.39236	1.41424	0.597111	0.757545	6.00161	2.0746	3.99375	5.1502	48.9894	53.3089	23.6038	22.8401	17.0093	22.7611	26.7622	20.4508	35.7111	31.9742	1.6332	2.1409	3.05896	1.4738	0.689656	0.441594	0.113174	0.467215
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00028403 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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