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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00028408 ID=TCONS_00028408|Name=TCONS_00028408|organism=Clytia hemisphaerica|type=transcript|length=4138bpRun BLAST on NCBI protein sequence of TCONS_00028408-protein >TCONS_00028408-protein ID=TCONS_00028408-protein|Name=TCONS_00028408-protein|organism=Clytia hemisphaerica|type=polypeptide|length=587bp MSAIQLEVWDYIIFGLMLLLSSVIGLYHGYQSNKNKRDSKDDYLLAGQSIRun BLAST on NCBI transcript from alignment at sc0000676:154170..174187- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00028408 ID=TCONS_00028408|Name=TCONS_00028408|organism=Clytia hemisphaerica|type=transcript|length=20018bp|location=Sequence derived from alignment at sc0000676:154170..174187- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000676:154170..174187- >TCONS_00028408 ID=TCONS_00028408|Name=TCONS_00028408|organism=Clytia hemisphaerica|type=CDS|length=26460bp|location=Sequence derived from alignment at sc0000676:154170..174187- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00028408 vs. Swiss-Prot (Human)
Match: SC5A8 (Sodium-coupled monocarboxylate transporter 1 OS=Homo sapiens GN=SLC5A8 PE=1 SV=2) HSP 1 Score: 359.377 bits (921), Expect = 1.497e-108 Identity = 196/532 (36.84%), Postives = 324/532 (60.90%), Query Frame = 2
Query: 1655 VWDYIIFGLMLLLSSVIGLYHGYQSNKNKRDSKDDYLLAGQSISWFPLFISLVASYLSAIALLGIPSEIYTYGGMYIVIMMSYPLFIFQCLVIYAPIFRRSKVTSANEYLEKRFHPAVRVFAAILFIKEYVLYLAVVLYAPSLALQAVAGVQMEISLVTIAVVCTIYTTIGGMKGVIWTDVFQTFXXXXXXXXXXXXXXXXXXXXQNVFEIAERGGRMNILDFNPDPRVRNTFWSFVFGGMFSAMPVYCVGQMMVQRIMSAKSEKTVRIALLLQIPGLMVIVGLCTLAGWVIYANYEKCDLKSSGQVQSNDQILAYFLVNKLHHLKGVPGIFMASLFSGALSTASSGFNSLAAITYEDIFKKIHGELSPQQAAKVSKIIAFIYGFVVLGVAFLVNKMGTMVLQLAYAIHGVIGGPSMGMFALGMLVPWSNTVGAFLGCVCGILITTWLAVGAFIFPP-DKNILP--VSIEQC-SIFNSTTMNAT--------IYHQFQPHNDPL-TSYYSVSYLWWGGVGIISSFVFGMIFS 3211
VWDY++F ML++S+ IG+Y+ + + + D+L+ G+ ++ P+ +SL AS++SA+ +LG PSE+Y +G ++ + +Y + ++ P+F + +TS EYLE RF+ VR+ +LFI + +LY +V+YAP+LAL V G + ++V VVCT Y T+GG+K VIWTDVFQ I+ G V+I GGI + A GGR+N +FNP+P R+TFW+ + GG F+ +Y V Q VQR +S KS +++L + + GL I+ G +Y+ Y CD ++ +V + DQ++ Y +++ L G+PG+F+A +SG LST SS N+LAA+T ED+ K LS + + +S+ ++ +YG + +G+A L + MG + LQ A ++ G++GGP MG+FALG+LVP++N++GA +G + G I+ W+ +GA I+PP + LP + I+ C S +N T + T ++ + PL ++YS+SYL++ VG + + + G++ S
Sbjct: 12 VWDYVVFAGMLVISAAIGIYYAFAGGGQQ--TSKDFLMGGRRMTAVPVALSLTASFMSAVTVLGTPSEVYRFGAIFSIFAFTYFFVVVISAEVFLPVFYKLGITSTYEYLELRFNKCVRLCGTVLFIVQTILYTGIVIYAPALALNQVTGFDLWGAVVATGVVCTFYCTLGGLKAVIWTDVFQVGIMVAGFASVIIQAVVMQGGISTILNDAYDGGRLNFWNFNPNPLQRHTFWTIIIGGTFTWTSIYGVNQSQVQRYISCKSRFQAKLSLYINLVGLWAILTCSVFCGLALYSRYHDCDPWTAKKVSAPDQLMPYLVLDILQDYPGLPGLFVACAYSGTLSTVSSSINALAAVTVEDLIKPYFRSLSERSLSWISQGMSVVYGALCIGMAALASLMGAL-LQAALSVFGMVGGPLMGLFALGILVPFANSIGALVGLMAGFAISLWVGIGAQIYPPLPERTLPLHLDIQGCNSTYNETNLMTTTEMPFTTSVFQIYNVQRTPLMDNWYSLSYLYFSTVGTLVTLLVGILVS 540 The following BLAST results are available for this feature:
BLAST of TCONS_00028408 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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