TCONS_00028411 (transcript) - C. hemisphaerica

Overview
NameTCONS_00028411
Unique NameTCONS_00028411
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length997

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00028411 ID=TCONS_00028411|Name=TCONS_00028411|organism=Clytia hemisphaerica|type=transcript|length=997bp
aaaaaaaattaaaaaaaattaaaaaaatattatctaTTGAAAATGTCCAT
TAACAATAAAGGCAATAAAAACACTAGACATGTACCTCATCAACCGGCAT
CAAATCACCATAGCAACACGGCAACAACAAACTACACAGCAGACCATGTA
CCTCATCAACCGGCATCAAATCACCATAGCAACACGGCAACAACAAACTA
CACAGCAGACCATGTACCTCATCAACCAGCATCAAATCACCATGGCAACA
CGGCAACGATAAACTACAAAGCAGACCATGTACCTTATCAACCGGCATCA
AATCACCATAGCAACACAGCAACAACAAACTACAAAGCAGACCATTTTGC
ACCAATCCACCAACACAACTGTGGTAGAGCCAATCGTTCCCAACTACCTG
AAATTCGTCACACAAAACCACACCACCACCACGCCCCTTACTACCATCAT
AAACACCATTATCACCATGACAACGTTTCCCACAATGTACCGCTATTAAA
ACAACACGAATCATCACCAAGTCACCATAGCAACAGATATGGTGAACTGT
TAAGTTTGATTGAAGATTTTGGTCAAGAATTAAAACCCACTTATGCTGGT
AGTAAATTGGCTCAAGAACGACTCAAGaaagGTATTATGCATGCTCGAGC
CTTGGTCAGAGAATGTTTGGCAGAAGTTGAGAAACATGCGGCTCCTCATC
AGTGATTTCTCAATTTGGAAGATGTATGTGGATCGATTCGGAAAGATACT
ATCGTAAAGGGGCGTAAGAGACTTCATTTCTGTACAATATTTTATTTGGA
CTTTCATTGGTGCTGTTTTTTAAATCAGAAAACTAAGTAAACGATGTAAA
ATAAATGATACCCTCCCGGGAGACACTGACCTCTGTGACGACCGACAAGG
ACGTTCTGCTAGAGTTTTAAAAATGGACCCTGACAGATATGAATATTTGG
TAAATGTCAGAAAGAAAAATCGATTTCCATCCTATTTTTTCCTTCCC
Run BLAST on NCBI

transcript from alignment at sc0000676:169382..174187-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00028411 ID=TCONS_00028411|Name=TCONS_00028411|organism=Clytia hemisphaerica|type=transcript|length=4806bp|location=Sequence derived from alignment at sc0000676:169382..174187- (Clytia hemisphaerica)
AAAAAAAATTAAAAAAAATTAAAAAAATATTATCTATTGAAAATGTCCAT
TAACAATAAAGGCAATAAAAACACTAGACATGTACCTCATCAACCGGCAT
CAAATCACCATAGCAACACGGCAACAACAAACTACACAGCAGACCATGTA
CCTCATCAACCGGCATCAAATCACCATAGCAACACGGCAACAACAAACTA
CACAGCAGACCATGTACCTCATCAACCAGCATCAAATCACCATGGCAACA
CGGCAACGATAAACTACAAAGCAGACCATGTACCTTATCAACCGGCATCA
AATCACCATAGCAACACAGCAACAACAAACTACAAAGCAGACCATTTTGC
ACCAATCCACCAACACAACTGTGGTAGAGCCAATCGTTCCCAACTACCTG
GTATGAATAAATTATTCCGATTTTGTTTTAAGGATTTTTCCAGTTACAAA
CTTAAGGATAAATTTATGGGTATAATTTAGATTTTGACTTGTTTATCATG
TAATCTTGACTCGTTTTACAAACTGGTGCTAGCTTAACTTCAACCTTCAA
CAATCGGAATAGGCTATAAGAATCATAATTTGAATTACTATAGTGTAGGT
TTGATTAACATAACATTCTTCTACGTTTAGGATAGCATGGTGACACAAAC
CAGTCCAAATCTAAATTGGACTCCTTTATGCTCTCAACTTCAAATGAGCT
AGAATCTAGTAATGTCTGTCTATTAGTTAGGGCTCTGTGTGTGTCACAAT
ACCCAAGTTTATTCAATTATTCAAATATTCAAAAATATCTTATTGGGCCA
ATGATCAAATGATAAAAAGTATTGTCAGAAGCTTTTTTTTGAAAAAAAAA
CTGTGGGTTCGACTTTCACAACACAATAAGTTACCGTCAGAGTGTAAAAA
TCTATCAACAGAAATCGTTATAATTGGCTAATACAATTCGAAGGTTCCAA
ATAAACGGCCCCACCCCCGCTTTCTCATTTTTCGAAAATTTAACAACCCT
CCCCCCCCGGACCTTATTAGGATCCCCACGTTTATAAATTTTTAAGAATA
TTTTCAGCTGTCAAAGAGAAGGCCCCTTATTTTGCTCTAAATAGCCTAAT
TTTAGCCTATATTTATCTTTTTTTTGGGTTTTCGGAAGTACAATTTCCAA
CCCCGGCAATTGGCCCCCCCGTTTATTTGGAACCTAAGAGTAAATGTAAA
GAATGTTTTCATGAAGAGTGTATAACTTCTTATCTTACTCCTATTATCTC
TTATTTTTTATCTATTCCAGAAGAAATTCGTCACACAAAACCACACCACC
ACCACGCCCCTTACTACCATCATAAACACCATTATCACCATGACAACGTT
TCCCACAATGTACCGCTATTAAAACAACACGAATCATCACCAAGTCACCA
TAGCAACAGATATGGTGAACTGTTAAGTTTGATTGAAGATTTTGGTCAAG
AATTAAAACCCACTTATGCTGGTAGTAAATTGGCTCAAGAACGACTCAAG
AAAGGTTTTTTGGATTTTCTTTATGATACACAGTTTGGATTTTGGTGCCC
CCTATTAAAAGTAAAATATCTTTGTTAATATGACGTGAGCGAAGCGAGCA
CGAAAATTTTTGATTATATTTTTTTCTGTCTGGCTGAAAACTGCTGATTT
TAGTGTGTCAAAAAGCAAAGTGGCGCCAAAATTAGTCATTAGAGATGCCT
TTCTCCCCGCCCCTTGCCACCATGCTACTGTACTGGGGCAAACATTCTCC
TCTCTCTTCACGAAATTTGACANACACCACCACCACGCCCCTTACTACCA
TCATAAACACCATTATCACCATGACAACGTTTCCCACAATGTACCGCTAT
TAAAACAACACGAATCATCACCAAGTCACCATAGCAACAAATATGGTGAA
CTGTTAAGTTTGATTGAAGATTTTGGTCAAGAATTAAAACCCACTTATGC
TGGTAGTAAATTGGCTCAAGAACGACTCAAGAAAGGTTTTTTGGATTTTC
TTTATGATACACAGTTTGGATTTTGGTGCCCCCTTTTAAAAGTAAAATAT
CTTTGTAAATATGACGTGAGCGAAGCGAGCACGAAAATTTTTGATTATAT
TTTTTTCTGTCTGGCTGAAAACTGCTGATTTTAGTGTGTCAAAAAGCAAA
GTGGCGCCAAAATTAGTCATTAGAGATGCCTTTCTCCCCGCCCCTTGCCA
CCATGCTACTGTACTGGGGCAAACATTCTCCTCTCTCTTCACGAAATTTG
ACAACAAATCGACCATCTGATCTTAAAGTCAATACAATGCTTTCTATTGA
CATTAATACACCAACTTCTTTCAATCTTTTTGTAGAAAGACTTGGTGAGA
ATTAATGATTTCTGTAGAACTGCTGTTCGTTTTCGTTCCATTCCTATGAT
CTGTAACTAAAATTTAAATCCCTATACAATGACTTCATTAAGGCCGGTCT
CCACTTTCGCGCGACATAAGCGAAAACTTTTTGACGTTTTTGTAAGGTGA
TTGGTTGGTTGAAAAATGAAGCAATCCCATTGGTCGAAATTGACGTAACG
GATGAAAAAAGTAGTACTTTCTTCAACTTTTTTTTTGTTCGCGCGAAACT
TTTTTATAACGTAATCTTTNAACTTTCTTGAGTGTGATAAATTGCGTGGG
TTGCGTGCATTCGTGGGTCGGAAAAAAATTCGTGGGTCCACAAAAAAAAT
TCGTGGGTCCATGAAAAAAATTCGTGGGTCCAAAAAAAAATTCGTGGGTC
GGAAAAAAATTCGTGGGTCCACAAAAAAAATTCGTGGGTCCATGAAAAAA
ATTCGTGGGTCCATGAAAAAAATTCGTGGGTCCAAAAAAAAAATTCGTGG
GTTCACAAAAAAAAATTCGTGGGTCCATGAAAAAAATTCGTGGGTCCATG
AAAAAAATTCGTGGGTCCAAAATAAAAATTCGTGGGTTCACAAAAAAAAT
TCGTACCGCTAACTTTGTGTTTGCCACCAGTTTTGGGATTAAAGGAATAG
ATAATATTACTCGTGTAATGCATAACTGTTAGAATTGCTTTCAAAATCCA
ATGAAACTGTCATACAATGAATGAAATTAATTACTCTTTTCCCTTAATCC
CAAAACTGGTGACAAGTCACAAAATTAACTGGAGATCTCATTTTGTTCCG
GATTGGTGAATATCATGACACCCCTGTTTCACAGACCCGGTGGGACCCCT
ACCCACTGAAAATTCAGGCCCAAAAAATCTTCCCCGGTGAACAAAAGCAT
AGAAACTGAAAAAAGGCTCATATCCCCATTGAAAAATGTAAAAAATCTTT
AAATCCCCACTAAGCTTTGATCGACTTGTCTCACCCCCACCAATATTTCG
AACAAAGAACGATAGAAAAAAAAGAAAAAAAAAACCGTTTTGGATAACCC
CGTTGGATTTTATGTCTCTTTATTTATAACCACAAATTATGTCACATTAT
TATTACGGCGTTTCTCATTTCGTTGAATTTTTTTCTGAACCCACGAATTT
TTTTCATTGGACCCACGAATTTTTTTAGTGAACCCACGAATTTTTTTTTT
GGACCCACGAATTTTTTTCATGGACCCACGAATTTTTTTCATGGACCCAC
GAATTTTTTTTTTGGACCCACGAATTTTTTTTGTGAACCCACGAATTTTT
TTTTGGACCCACGAATTTTTTTTGTGAACCCACGAATTATTTTTTTGGAC
CTACGAATTTTTTTCATGGACCCACGAATTTTTTTCATGGACCCACGAAT
TTTTTTTTTGGACCCACGAATTTTTGTCATGTACCCACGAATTTTTTTCA
TGGACCCACGAATTTTTTTTTTGGAACCACGAATTTTTTTCATGGACCCA
CGAATTTTTTTTGTGAACCCACGAATCTTTTTCATGGACCCACGAATTTT
TTTTGTGAACCCACGAATTTTTTTTTTGGACCCACGAATTTTTTTTGTGA
ACCCACGAATTTTTTTTTTNCTAAATGTCAGAAAGAAAAATCGATTTCCA
TCCTATTTTTTCCTTCCCATTTCTTCCTTCCAATTTTCACCCTAAAAAGT
TGCCAAAATGAGTAGAATTAGACTAAAAATCGAAAAAATTTCTAATTTCC
ACCCTGAAAATTGTCAAAAATTACCAACAGTCGACCCTGTCAGATACACA
TCTTGAAAGTTAGTAAATTTGGAACCCTGNTGAATTTTTTTTGTGGACCC
ACGAATTTTTTTCCGACCCACGAAGGCACGCAACCCACGCAATTTATCAC
ACTCAACTTTCTTCAACTTTTTTTTTGTTCGCGCGAAACTTTTTTATAAC
GTAATCTTTTCTTCAGGCAAAAAAGGTTGAGAAATAACTGTCTCTCATTT
CGCGCGAAAGTGGAGACCGGCCTTTAACCAAGAATGGATCAAAGGTAAAG
CTTCCTGGCACCTTCATAAACATGCTCTTCTCTCTTATAGGTATTATGCA
TGCTCGAGCCTTGGTCAGAGAATGTTTGGCAGAAGTTGAGAAACATGCGG
CTCCTCATCAGTGATTTCTCAATTTGGAAGATGTATGTGGATCGATTCGG
AAAGATACTATCGTAAAGGGGCGTAAGAGACTTCATTTCTGTACAATATT
TTATTTGGACTTTCATTGGTGCTGTTTTTTAAATCAGAAAACTAAGTAAA
CGATGTAAAATAAATGATACCCTCCCGGGAGACACTGACCTCTGTGACGA
CCGACAAGGACGTTCTGCTAGAGTTTTAAAAATGGACCCTGACAGATATG
AATATTTGGTAAATGTCAGAAAGAAAAATCGATTTCCATCCTATTTTTTC
CTTCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016094XLOC_016094Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00028411-exon-sc0000676-1575043694:173788..174187TCONS_00028411-exon-sc0000676-1575043694:173788..174187Clytia hemisphaericaexon
TCONS_00028411-exon-sc0000676-1575043694:172684..172914TCONS_00028411-exon-sc0000676-1575043694:172684..172914Clytia hemisphaericaexon
TCONS_00028411-exon-sc0000676-1575043694:169382..169747TCONS_00028411-exon-sc0000676-1575043694:169382..169747Clytia hemisphaericaexon
TCONS_00028411-exon-sc0000676-1510915933:173788..174187TCONS_00028411-exon-sc0000676-1510915933:173788..174187Clytia hemisphaericaexon
TCONS_00028411-exon-sc0000676-1510915933:172684..172914TCONS_00028411-exon-sc0000676-1510915933:172684..172914Clytia hemisphaericaexon
TCONS_00028411-exon-sc0000676-1510915933:169382..169747TCONS_00028411-exon-sc0000676-1510915933:169382..169747Clytia hemisphaericaexon
TCONS_00028411-exon-sc0000676-1491911889:173788..174187TCONS_00028411-exon-sc0000676-1491911889:173788..174187Clytia hemisphaericaexon
TCONS_00028411-exon-sc0000676-1491911889:172684..172914TCONS_00028411-exon-sc0000676-1491911889:172684..172914Clytia hemisphaericaexon
TCONS_00028411-exon-sc0000676-1491911889:169382..169747TCONS_00028411-exon-sc0000676-1491911889:169382..169747Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000676supercontigsc0000676:169382..174187 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.55686	4.25021	5.61437	3.48288	5.63498	6.96636	10.8405	12.3775	4.67285	3.48442	8.01625	3.03623	0	0	0	0	0	0	0	0	0	0	0	0	4.79268	5.68673	0.809017	0.409285	0	0
Blast
[Close]
BLAST of TCONS_00028411 vs. Swiss-Prot (Human)
Match: CDKA2 (Cyclin-dependent kinase 2-associated protein 2 OS=Homo sapiens GN=CDK2AP2 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.174e-20
Identity = 36/51 (70.59%), Postives = 46/51 (90.20%), Query Frame = 1 
Query:  538 YGELLSLIEDFGQELKPTYAGSKLAQERLKKGIMHARALVRECLAEVEKHA 690
            Y +LLS+IE+ G+E++PTYAGSK A ERLK+GI+HARALVRECLAE E++A
Sbjct:   74 YTDLLSVIEEMGKEIRPTYAGSKSAMERLKRGIIHARALVRECLAETERNA 124
The following BLAST results are available for this feature:
BLAST of TCONS_00028411 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CDKA22.174e-2070.59Cyclin-dependent kinase 2-associated protein 2 OS=... [more]
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